GSE290281 eCLIP Data Processing

eCLIP geo_data_processing 1 step

Publication

Large-scale tethered screen of RNA-binding proteins reveals novel regulators of poly(A) site selection.

Molecular cell (2026) — PMID 42361791

Dataset

GSE290281

Large-scale tethered screen of RNA-binding proteins reveals novel regulators of poly(A) site selection [eCLIP]

Warning: Pipeline descriptions and code snippets may be inferred or AI-generated. Use them only as a starting point to guide analysis, and validate before use.

Processing Steps

Generate Jupyter Notebook
  1. 1

    eCLIP data was analyzed using Skipper (Boyle et al., 2023) with default parameters and sample-matched adapter sequences.

    Skipper
Raw Source Text 
eCLIP data was analyzed using Skipper (Boyle et al., 2023) with default parameters and sample-matched adapter sequences.
Assembly: hg38
Supplementary files format and content: Tab-delimited file containing reproducible enriched RBP binding regions identified using Skipper.
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