GSE44591 Processing Pipeline

RNA-Seq code_examples 1 step

Publication

Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing.

Molecular cell (2013) — PMID 23562324

Dataset

GSE44591

Genome-wide Analysis Reveals SR Protein Cooperation and Competition in Regulated Splicing

Warning: Pipeline descriptions and code snippets may be inferred or AI-generated. Use them only as a starting point to guide analysis, and validate before use.

Processing Steps

Generate Jupyter Notebook
  1. 1

    Density files on two different strands were generated by using bedItemOverlapCount and wigToBigWig programs from UCSC kent source package.

    UCSC tools

Tools Used

UCSC tools
Raw Source Text 
Density files on two different strands were generated by using bedItemOverlapCount and wigToBigWig programs from UCSC kent source package.
genome build: mm9
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