GSE302651 Data Processing

geo_data_processing 3 steps

Publication

High-resolution mapping of CCR4-NOT recruitment elements reveals transcriptome-wide drivers of mRNA decay.

Cell reports (2026) — PMID 42154591

Dataset

GSE302651

Mapping CCR4-NOT recruitment elements at high resolution reveals transcriptome-wide determinants of mRNA decay

Warning: Pipeline descriptions and code snippets may be inferred or AI-generated. Use them only as a starting point to guide analysis, and validate before use.

Processing Steps

Generate Jupyter Notebook
  1. 1

    Reads were aligned to the GRCh38 reference genome using STAR

    STAR
  2. 2

    raw counts were calculated with FeatureCounts 39 on the GRCh38 reference genome (release 110)

    featureCounts
  3. 3

    Differential expression of normalized data was carried out using DESeq2

    DESeq2
Raw Source Text 
Reads were aligned to the GRCh38 reference genome using STAR
raw counts were calculated with FeatureCounts 39 on the GRCh38 reference genome (release 110)
Differential expression of normalized data was carried out using DESeq2
Assembly: GRCh38 reference genome (release 110)
Supplementary files format and content: DESeq2 results (LFC, p-values, FDR etc) and raw counts in a CSV file.
← Back to Analysis