#!/usr/bin/env bash
# Bulk download script for GSE159074
# Generated from Yeo Lab Publications Database
# Total files: 113

OUTDIR="GSE159074"
mkdir -p "$OUTDIR"
cd "$OUTDIR"

# --- GEO supplementary files ---
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159074/suppl/GSE159074_Bardy2016_expr_df_PatchSeq_56cells_TPM.txt.gz" -O "GSE159074_Bardy2016_expr_df_PatchSeq_56cells_TPM.txt.gz"

# --- SRA run files ---
# Tip: use 'fasterq-dump' from SRA Toolkit for FASTQ conversion
#      with optional renaming to original submitted FASTQ names.
# Set to 1 to rename SRR outputs (e.g. SRR_1.fastq.gz -> sample_R1.fastq.gz)
RENAME_SRA_TO_ORIGINAL=1

_compress_if_exists() {
  local stem="$1"
  if [ -f "${stem}.fastq" ]; then
    gzip -f "${stem}.fastq"
    echo "${stem}.fastq.gz"
    return 0
  fi
  if [ -f "${stem}.fq" ]; then
    gzip -f "${stem}.fq"
    echo "${stem}.fq.gz"
    return 0
  fi
  return 1
}

# Option A: Download via SRA Toolkit (recommended)
fasterq-dump --split-files "SRR12778844"
gz1="$(_compress_if_exists 'SRR12778844_1' || true)"
gz2="$(_compress_if_exists 'SRR12778844_2' || true)"
gzs="$(_compress_if_exists 'SRR12778844' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C003_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C003_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778845"
gz1="$(_compress_if_exists 'SRR12778845_1' || true)"
gz2="$(_compress_if_exists 'SRR12778845_2' || true)"
gzs="$(_compress_if_exists 'SRR12778845' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C004_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C004_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778846"
gz1="$(_compress_if_exists 'SRR12778846_1' || true)"
gz2="$(_compress_if_exists 'SRR12778846_2' || true)"
gzs="$(_compress_if_exists 'SRR12778846' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C013_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C013_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778847"
gz1="$(_compress_if_exists 'SRR12778847_1' || true)"
gz2="$(_compress_if_exists 'SRR12778847_2' || true)"
gzs="$(_compress_if_exists 'SRR12778847' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C014_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C014_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778848"
gz1="$(_compress_if_exists 'SRR12778848_1' || true)"
gz2="$(_compress_if_exists 'SRR12778848_2' || true)"
gzs="$(_compress_if_exists 'SRR12778848' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C016_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C016_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778849"
gz1="$(_compress_if_exists 'SRR12778849_1' || true)"
gz2="$(_compress_if_exists 'SRR12778849_2' || true)"
gzs="$(_compress_if_exists 'SRR12778849' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C022_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C022_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778850"
gz1="$(_compress_if_exists 'SRR12778850_1' || true)"
gz2="$(_compress_if_exists 'SRR12778850_2' || true)"
gzs="$(_compress_if_exists 'SRR12778850' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C024_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C024_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778851"
gz1="$(_compress_if_exists 'SRR12778851_1' || true)"
gz2="$(_compress_if_exists 'SRR12778851_2' || true)"
gzs="$(_compress_if_exists 'SRR12778851' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C028_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C028_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778852"
gz1="$(_compress_if_exists 'SRR12778852_1' || true)"
gz2="$(_compress_if_exists 'SRR12778852_2' || true)"
gzs="$(_compress_if_exists 'SRR12778852' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C042_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C042_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778853"
gz1="$(_compress_if_exists 'SRR12778853_1' || true)"
gz2="$(_compress_if_exists 'SRR12778853_2' || true)"
gzs="$(_compress_if_exists 'SRR12778853' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C044_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C044_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778854"
gz1="$(_compress_if_exists 'SRR12778854_1' || true)"
gz2="$(_compress_if_exists 'SRR12778854_2' || true)"
gzs="$(_compress_if_exists 'SRR12778854' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C045_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C045_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778855"
gz1="$(_compress_if_exists 'SRR12778855_1' || true)"
gz2="$(_compress_if_exists 'SRR12778855_2' || true)"
gzs="$(_compress_if_exists 'SRR12778855' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C046_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C046_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778856"
gz1="$(_compress_if_exists 'SRR12778856_1' || true)"
gz2="$(_compress_if_exists 'SRR12778856_2' || true)"
gzs="$(_compress_if_exists 'SRR12778856' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C053_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C053_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778857"
gz1="$(_compress_if_exists 'SRR12778857_1' || true)"
gz2="$(_compress_if_exists 'SRR12778857_2' || true)"
gzs="$(_compress_if_exists 'SRR12778857' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C055_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C055_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778858"
gz1="$(_compress_if_exists 'SRR12778858_1' || true)"
gz2="$(_compress_if_exists 'SRR12778858_2' || true)"
gzs="$(_compress_if_exists 'SRR12778858' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C057_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C057_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778859"
gz1="$(_compress_if_exists 'SRR12778859_1' || true)"
gz2="$(_compress_if_exists 'SRR12778859_2' || true)"
gzs="$(_compress_if_exists 'SRR12778859' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C060_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C060_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778860"
gz1="$(_compress_if_exists 'SRR12778860_1' || true)"
gz2="$(_compress_if_exists 'SRR12778860_2' || true)"
gzs="$(_compress_if_exists 'SRR12778860' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C061_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C061_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778861"
gz1="$(_compress_if_exists 'SRR12778861_1' || true)"
gz2="$(_compress_if_exists 'SRR12778861_2' || true)"
gzs="$(_compress_if_exists 'SRR12778861' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C063_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C063_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778862"
gz1="$(_compress_if_exists 'SRR12778862_1' || true)"
gz2="$(_compress_if_exists 'SRR12778862_2' || true)"
gzs="$(_compress_if_exists 'SRR12778862' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C086_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C086_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778863"
gz1="$(_compress_if_exists 'SRR12778863_1' || true)"
gz2="$(_compress_if_exists 'SRR12778863_2' || true)"
gzs="$(_compress_if_exists 'SRR12778863' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C098_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C098_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778864"
gz1="$(_compress_if_exists 'SRR12778864_1' || true)"
gz2="$(_compress_if_exists 'SRR12778864_2' || true)"
gzs="$(_compress_if_exists 'SRR12778864' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C099_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C099_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778865"
gz1="$(_compress_if_exists 'SRR12778865_1' || true)"
gz2="$(_compress_if_exists 'SRR12778865_2' || true)"
gzs="$(_compress_if_exists 'SRR12778865' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C100_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C100_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778866"
gz1="$(_compress_if_exists 'SRR12778866_1' || true)"
gz2="$(_compress_if_exists 'SRR12778866_2' || true)"
gzs="$(_compress_if_exists 'SRR12778866' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C101_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C101_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778867"
gz1="$(_compress_if_exists 'SRR12778867_1' || true)"
gz2="$(_compress_if_exists 'SRR12778867_2' || true)"
gzs="$(_compress_if_exists 'SRR12778867' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C105_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C105_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778868"
gz1="$(_compress_if_exists 'SRR12778868_1' || true)"
gz2="$(_compress_if_exists 'SRR12778868_2' || true)"
gzs="$(_compress_if_exists 'SRR12778868' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C107_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C107_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778869"
gz1="$(_compress_if_exists 'SRR12778869_1' || true)"
gz2="$(_compress_if_exists 'SRR12778869_2' || true)"
gzs="$(_compress_if_exists 'SRR12778869' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C110_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C110_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778870"
gz1="$(_compress_if_exists 'SRR12778870_1' || true)"
gz2="$(_compress_if_exists 'SRR12778870_2' || true)"
gzs="$(_compress_if_exists 'SRR12778870' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C111_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C111_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778871"
gz1="$(_compress_if_exists 'SRR12778871_1' || true)"
gz2="$(_compress_if_exists 'SRR12778871_2' || true)"
gzs="$(_compress_if_exists 'SRR12778871' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C115_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C115_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778872"
gz1="$(_compress_if_exists 'SRR12778872_1' || true)"
gz2="$(_compress_if_exists 'SRR12778872_2' || true)"
gzs="$(_compress_if_exists 'SRR12778872' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C116_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C116_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778873"
gz1="$(_compress_if_exists 'SRR12778873_1' || true)"
gz2="$(_compress_if_exists 'SRR12778873_2' || true)"
gzs="$(_compress_if_exists 'SRR12778873' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C119_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C119_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778874"
gz1="$(_compress_if_exists 'SRR12778874_1' || true)"
gz2="$(_compress_if_exists 'SRR12778874_2' || true)"
gzs="$(_compress_if_exists 'SRR12778874' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C124_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C124_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778875"
gz1="$(_compress_if_exists 'SRR12778875_1' || true)"
gz2="$(_compress_if_exists 'SRR12778875_2' || true)"
gzs="$(_compress_if_exists 'SRR12778875' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C125_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C125_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778876"
gz1="$(_compress_if_exists 'SRR12778876_1' || true)"
gz2="$(_compress_if_exists 'SRR12778876_2' || true)"
gzs="$(_compress_if_exists 'SRR12778876' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C129_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C129_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778877"
gz1="$(_compress_if_exists 'SRR12778877_1' || true)"
gz2="$(_compress_if_exists 'SRR12778877_2' || true)"
gzs="$(_compress_if_exists 'SRR12778877' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C130_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C130_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778878"
gz1="$(_compress_if_exists 'SRR12778878_1' || true)"
gz2="$(_compress_if_exists 'SRR12778878_2' || true)"
gzs="$(_compress_if_exists 'SRR12778878' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C132_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C132_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778879"
gz1="$(_compress_if_exists 'SRR12778879_1' || true)"
gz2="$(_compress_if_exists 'SRR12778879_2' || true)"
gzs="$(_compress_if_exists 'SRR12778879' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C133_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C133_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778880"
gz1="$(_compress_if_exists 'SRR12778880_1' || true)"
gz2="$(_compress_if_exists 'SRR12778880_2' || true)"
gzs="$(_compress_if_exists 'SRR12778880' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C155_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C155_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778881"
gz1="$(_compress_if_exists 'SRR12778881_1' || true)"
gz2="$(_compress_if_exists 'SRR12778881_2' || true)"
gzs="$(_compress_if_exists 'SRR12778881' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C156_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C156_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778882"
gz1="$(_compress_if_exists 'SRR12778882_1' || true)"
gz2="$(_compress_if_exists 'SRR12778882_2' || true)"
gzs="$(_compress_if_exists 'SRR12778882' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C158_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C158_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778883"
gz1="$(_compress_if_exists 'SRR12778883_1' || true)"
gz2="$(_compress_if_exists 'SRR12778883_2' || true)"
gzs="$(_compress_if_exists 'SRR12778883' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C165_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C165_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778884"
gz1="$(_compress_if_exists 'SRR12778884_1' || true)"
gz2="$(_compress_if_exists 'SRR12778884_2' || true)"
gzs="$(_compress_if_exists 'SRR12778884' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C166_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C166_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778885"
gz1="$(_compress_if_exists 'SRR12778885_1' || true)"
gz2="$(_compress_if_exists 'SRR12778885_2' || true)"
gzs="$(_compress_if_exists 'SRR12778885' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C167_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C167_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778886"
gz1="$(_compress_if_exists 'SRR12778886_1' || true)"
gz2="$(_compress_if_exists 'SRR12778886_2' || true)"
gzs="$(_compress_if_exists 'SRR12778886' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C168_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C168_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778887"
gz1="$(_compress_if_exists 'SRR12778887_1' || true)"
gz2="$(_compress_if_exists 'SRR12778887_2' || true)"
gzs="$(_compress_if_exists 'SRR12778887' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C169_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C169_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778888"
gz1="$(_compress_if_exists 'SRR12778888_1' || true)"
gz2="$(_compress_if_exists 'SRR12778888_2' || true)"
gzs="$(_compress_if_exists 'SRR12778888' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C172_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C172_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778889"
gz1="$(_compress_if_exists 'SRR12778889_1' || true)"
gz2="$(_compress_if_exists 'SRR12778889_2' || true)"
gzs="$(_compress_if_exists 'SRR12778889' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C174_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C174_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778890"
gz1="$(_compress_if_exists 'SRR12778890_1' || true)"
gz2="$(_compress_if_exists 'SRR12778890_2' || true)"
gzs="$(_compress_if_exists 'SRR12778890' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C175_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C175_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778891"
gz1="$(_compress_if_exists 'SRR12778891_1' || true)"
gz2="$(_compress_if_exists 'SRR12778891_2' || true)"
gzs="$(_compress_if_exists 'SRR12778891' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C176_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C176_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778892"
gz1="$(_compress_if_exists 'SRR12778892_1' || true)"
gz2="$(_compress_if_exists 'SRR12778892_2' || true)"
gzs="$(_compress_if_exists 'SRR12778892' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C179_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C179_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778893"
gz1="$(_compress_if_exists 'SRR12778893_1' || true)"
gz2="$(_compress_if_exists 'SRR12778893_2' || true)"
gzs="$(_compress_if_exists 'SRR12778893' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C188_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C188_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778894"
gz1="$(_compress_if_exists 'SRR12778894_1' || true)"
gz2="$(_compress_if_exists 'SRR12778894_2' || true)"
gzs="$(_compress_if_exists 'SRR12778894' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C189_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C189_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778895"
gz1="$(_compress_if_exists 'SRR12778895_1' || true)"
gz2="$(_compress_if_exists 'SRR12778895_2' || true)"
gzs="$(_compress_if_exists 'SRR12778895' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C191_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C191_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778896"
gz1="$(_compress_if_exists 'SRR12778896_1' || true)"
gz2="$(_compress_if_exists 'SRR12778896_2' || true)"
gzs="$(_compress_if_exists 'SRR12778896' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C192_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C192_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778897"
gz1="$(_compress_if_exists 'SRR12778897_1' || true)"
gz2="$(_compress_if_exists 'SRR12778897_2' || true)"
gzs="$(_compress_if_exists 'SRR12778897' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C194_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C194_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778898"
gz1="$(_compress_if_exists 'SRR12778898_1' || true)"
gz2="$(_compress_if_exists 'SRR12778898_2' || true)"
gzs="$(_compress_if_exists 'SRR12778898' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C195_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C195_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12778899"
gz1="$(_compress_if_exists 'SRR12778899_1' || true)"
gz2="$(_compress_if_exists 'SRR12778899_2' || true)"
gzs="$(_compress_if_exists 'SRR12778899' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "C196_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "C196_R2.fastq.gz"
fi


# Option B: Direct download (larger .sra files)
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778844/SRR12778844"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778845/SRR12778845"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778846/SRR12778846"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778847/SRR12778847"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778848/SRR12778848"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778849/SRR12778849"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778850/SRR12778850"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778851/SRR12778851"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778852/SRR12778852"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778853/SRR12778853"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778854/SRR12778854"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778855/SRR12778855"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778856/SRR12778856"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778857/SRR12778857"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778858/SRR12778858"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778859/SRR12778859"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778860/SRR12778860"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778861/SRR12778861"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778862/SRR12778862"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778863/SRR12778863"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778864/SRR12778864"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778865/SRR12778865"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778866/SRR12778866"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778867/SRR12778867"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778868/SRR12778868"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778869/SRR12778869"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778870/SRR12778870"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778871/SRR12778871"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778872/SRR12778872"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778873/SRR12778873"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778874/SRR12778874"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778875/SRR12778875"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778876/SRR12778876"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778877/SRR12778877"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778878/SRR12778878"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778879/SRR12778879"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778880/SRR12778880"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778881/SRR12778881"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778882/SRR12778882"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778883/SRR12778883"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778884/SRR12778884"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778885/SRR12778885"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778886/SRR12778886"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778887/SRR12778887"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778888/SRR12778888"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778889/SRR12778889"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778890/SRR12778890"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778891/SRR12778891"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778892/SRR12778892"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778893/SRR12778893"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778894/SRR12778894"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778895/SRR12778895"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778896/SRR12778896"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778897/SRR12778897"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778898/SRR12778898"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778899/SRR12778899"

# --- Additional data files ---
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778844/SRR12778844"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778845/SRR12778845"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778846/SRR12778846"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778847/SRR12778847"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778848/SRR12778848"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778849/SRR12778849"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778850/SRR12778850"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778851/SRR12778851"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778852/SRR12778852"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778853/SRR12778853"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778854/SRR12778854"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778855/SRR12778855"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778856/SRR12778856"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778857/SRR12778857"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778858/SRR12778858"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778859/SRR12778859"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778860/SRR12778860"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778861/SRR12778861"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778862/SRR12778862"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778863/SRR12778863"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778864/SRR12778864"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778865/SRR12778865"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778866/SRR12778866"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778867/SRR12778867"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778868/SRR12778868"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778869/SRR12778869"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778870/SRR12778870"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778871/SRR12778871"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778872/SRR12778872"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778873/SRR12778873"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778874/SRR12778874"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778875/SRR12778875"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778876/SRR12778876"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778877/SRR12778877"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778878/SRR12778878"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778879/SRR12778879"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778880/SRR12778880"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778881/SRR12778881"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778882/SRR12778882"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778883/SRR12778883"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778884/SRR12778884"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778885/SRR12778885"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778886/SRR12778886"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778887/SRR12778887"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778888/SRR12778888"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778889/SRR12778889"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778890/SRR12778890"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778891/SRR12778891"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778892/SRR12778892"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778893/SRR12778893"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778894/SRR12778894"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778895/SRR12778895"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778896/SRR12778896"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778897/SRR12778897"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778898/SRR12778898"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12778899/SRR12778899"

echo "Download complete. Files saved to $OUTDIR"