#!/usr/bin/env bash
# Bulk download script for GSE157050
# Generated from Yeo Lab Publications Database
# Total files: 198

OUTDIR="GSE157050"
mkdir -p "$OUTDIR"
cd "$OUTDIR"

# --- GEO supplementary files ---
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_AATSC_ins_PvsI.edgeR.txt.gz" -O "GSE157050_AATSC_ins_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_AATSC_insmet_PvsI.edgeR.txt.gz" -O "GSE157050_AATSC_insmet_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_AATSC_met_PvsI.edgeR.txt.gz" -O "GSE157050_AATSC_met_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_AATSC_ut_PvsI.edgeR.txt.gz" -O "GSE157050_AATSC_ut_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_AA_ins_PvsI.edgeR.txt.gz" -O "GSE157050_AA_ins_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_AA_insmet_PvsI.edgeR.txt.gz" -O "GSE157050_AA_insmet_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_AA_met_PvsI.edgeR.txt.gz" -O "GSE157050_AA_met_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_AA_ut_PvsI.edgeR.txt.gz" -O "GSE157050_AA_ut_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_AMPK_ins_PvsI.edgeR.txt.gz" -O "GSE157050_AMPK_ins_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_AMPK_insmet_PvsI.edgeR.txt.gz" -O "GSE157050_AMPK_insmet_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_AMPK_met_PvsI.edgeR.txt.gz" -O "GSE157050_AMPK_met_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_AMPK_ut_PvsI.edgeR.txt.gz" -O "GSE157050_AMPK_ut_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_TSC_ins_PvsI.edgeR.txt.gz" -O "GSE157050_TSC_ins_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_TSC_insmet_PvsI.edgeR.txt.gz" -O "GSE157050_TSC_insmet_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_TSC_met_PvsI.edgeR.txt.gz" -O "GSE157050_TSC_met_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_TSC_ut_PvsI.edgeR.txt.gz" -O "GSE157050_TSC_ut_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_WT_ink_PvsI.edgeR.txt.gz" -O "GSE157050_WT_ink_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_WT_ins_PvsI.edgeR.txt.gz" -O "GSE157050_WT_ins_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_WT_insink_PvsI.edgeR.txt.gz" -O "GSE157050_WT_insink_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_WT_insmet_PvsI.edgeR.txt.gz" -O "GSE157050_WT_insmet_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_WT_met_PvsI.edgeR.txt.gz" -O "GSE157050_WT_met_PvsI.edgeR.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157050/suppl/GSE157050_WT_ut_PvsI.edgeR.txt.gz" -O "GSE157050_WT_ut_PvsI.edgeR.txt.gz"

# --- SRA run files ---
# Tip: use 'fasterq-dump' from SRA Toolkit for FASTQ conversion
#      with optional renaming to original submitted FASTQ names.
# Set to 1 to rename SRR outputs (e.g. SRR_1.fastq.gz -> sample_R1.fastq.gz)
RENAME_SRA_TO_ORIGINAL=1

_compress_if_exists() {
  local stem="$1"
  if [ -f "${stem}.fastq" ]; then
    gzip -f "${stem}.fastq"
    echo "${stem}.fastq.gz"
    return 0
  fi
  if [ -f "${stem}.fq" ]; then
    gzip -f "${stem}.fq"
    echo "${stem}.fq.gz"
    return 0
  fi
  return 1
}

# Option A: Download via SRA Toolkit (recommended)
fasterq-dump --split-files "SRR12539898"
gz1="$(_compress_if_exists 'SRR12539898_1' || true)"
gz2="$(_compress_if_exists 'SRR12539898_2' || true)"
gzs="$(_compress_if_exists 'SRR12539898' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "WTUTinput_JVN1_S17_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539899"
gz1="$(_compress_if_exists 'SRR12539899_1' || true)"
gz2="$(_compress_if_exists 'SRR12539899_2' || true)"
gzs="$(_compress_if_exists 'SRR12539899' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "WTMetinput_JVN2_S18_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539900"
gz1="$(_compress_if_exists 'SRR12539900_1' || true)"
gz2="$(_compress_if_exists 'SRR12539900_2' || true)"
gzs="$(_compress_if_exists 'SRR12539900' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "wt_ins_input_JVN_62_S12_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539901"
gz1="$(_compress_if_exists 'SRR12539901_1' || true)"
gz2="$(_compress_if_exists 'SRR12539901_2' || true)"
gzs="$(_compress_if_exists 'SRR12539901' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "wt_ins_input_JVN_62_S12_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539902"
gz1="$(_compress_if_exists 'SRR12539902_1' || true)"
gz2="$(_compress_if_exists 'SRR12539902_2' || true)"
gzs="$(_compress_if_exists 'SRR12539902' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "WTInsInput_JVN12_S28_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539903"
gz1="$(_compress_if_exists 'SRR12539903_1' || true)"
gz2="$(_compress_if_exists 'SRR12539903_2' || true)"
gzs="$(_compress_if_exists 'SRR12539903' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "wt_ins_met_input_JVN_63_S13_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539904"
gz1="$(_compress_if_exists 'SRR12539904_1' || true)"
gz2="$(_compress_if_exists 'SRR12539904_2' || true)"
gzs="$(_compress_if_exists 'SRR12539904' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "wt_ins_met_input_JVN_63_S13_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539905"
gz1="$(_compress_if_exists 'SRR12539905_1' || true)"
gz2="$(_compress_if_exists 'SRR12539905_2' || true)"
gzs="$(_compress_if_exists 'SRR12539905' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "WTInsMetInput_JVN13_S29_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539906"
gz1="$(_compress_if_exists 'SRR12539906_1' || true)"
gz2="$(_compress_if_exists 'SRR12539906_2' || true)"
gzs="$(_compress_if_exists 'SRR12539906' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "WtInkinput_JVN3_S19_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539907"
gz1="$(_compress_if_exists 'SRR12539907_1' || true)"
gz2="$(_compress_if_exists 'SRR12539907_2' || true)"
gzs="$(_compress_if_exists 'SRR12539907' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "wt_ink_input_JVN_72_S22_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539908"
gz1="$(_compress_if_exists 'SRR12539908_1' || true)"
gz2="$(_compress_if_exists 'SRR12539908_2' || true)"
gzs="$(_compress_if_exists 'SRR12539908' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "wt_ink_input_JVN_72_S22_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539909"
gz1="$(_compress_if_exists 'SRR12539909_1' || true)"
gz2="$(_compress_if_exists 'SRR12539909_2' || true)"
gzs="$(_compress_if_exists 'SRR12539909' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "WTInsInkInput_JVN14_S30_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539910"
gz1="$(_compress_if_exists 'SRR12539910_1' || true)"
gz2="$(_compress_if_exists 'SRR12539910_2' || true)"
gzs="$(_compress_if_exists 'SRR12539910' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AAUTinput_JVN4_S20_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539911"
gz1="$(_compress_if_exists 'SRR12539911_1' || true)"
gz2="$(_compress_if_exists 'SRR12539911_2' || true)"
gzs="$(_compress_if_exists 'SRR12539911' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AAMetinput_JVN5_S21_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539912"
gz1="$(_compress_if_exists 'SRR12539912_1' || true)"
gz2="$(_compress_if_exists 'SRR12539912_2' || true)"
gzs="$(_compress_if_exists 'SRR12539912' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "aa_ins_input_JVN_64_S14_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539913"
gz1="$(_compress_if_exists 'SRR12539913_1' || true)"
gz2="$(_compress_if_exists 'SRR12539913_2' || true)"
gzs="$(_compress_if_exists 'SRR12539913' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "aa_ins_input_JVN_64_S14_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539914"
gz1="$(_compress_if_exists 'SRR12539914_1' || true)"
gz2="$(_compress_if_exists 'SRR12539914_2' || true)"
gzs="$(_compress_if_exists 'SRR12539914' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AAInsInput_JVN15_S31_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539915"
gz1="$(_compress_if_exists 'SRR12539915_1' || true)"
gz2="$(_compress_if_exists 'SRR12539915_2' || true)"
gzs="$(_compress_if_exists 'SRR12539915' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "aa_ins_met_input_JVN_65_S15_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539916"
gz1="$(_compress_if_exists 'SRR12539916_1' || true)"
gz2="$(_compress_if_exists 'SRR12539916_2' || true)"
gzs="$(_compress_if_exists 'SRR12539916' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "aa_ins_met_input_JVN_65_S15_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539917"
gz1="$(_compress_if_exists 'SRR12539917_1' || true)"
gz2="$(_compress_if_exists 'SRR12539917_2' || true)"
gzs="$(_compress_if_exists 'SRR12539917' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AAInsMetInput_JVN16_S32_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539918"
gz1="$(_compress_if_exists 'SRR12539918_1' || true)"
gz2="$(_compress_if_exists 'SRR12539918_2' || true)"
gzs="$(_compress_if_exists 'SRR12539918' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TscUTinput_JVN6_S22_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539919"
gz1="$(_compress_if_exists 'SRR12539919_1' || true)"
gz2="$(_compress_if_exists 'SRR12539919_2' || true)"
gzs="$(_compress_if_exists 'SRR12539919' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TscMetinput_JVN7_S23_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539920"
gz1="$(_compress_if_exists 'SRR12539920_1' || true)"
gz2="$(_compress_if_exists 'SRR12539920_2' || true)"
gzs="$(_compress_if_exists 'SRR12539920' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "tsc_ins_input_JVN_66_S16_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539921"
gz1="$(_compress_if_exists 'SRR12539921_1' || true)"
gz2="$(_compress_if_exists 'SRR12539921_2' || true)"
gzs="$(_compress_if_exists 'SRR12539921' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "tsc_ins_input_JVN_66_S16_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539922"
gz1="$(_compress_if_exists 'SRR12539922_1' || true)"
gz2="$(_compress_if_exists 'SRR12539922_2' || true)"
gzs="$(_compress_if_exists 'SRR12539922' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TscInsInput_JVN17_S33_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539923"
gz1="$(_compress_if_exists 'SRR12539923_1' || true)"
gz2="$(_compress_if_exists 'SRR12539923_2' || true)"
gzs="$(_compress_if_exists 'SRR12539923' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "tsc_ins_met_input_JVN_67_S17_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539924"
gz1="$(_compress_if_exists 'SRR12539924_1' || true)"
gz2="$(_compress_if_exists 'SRR12539924_2' || true)"
gzs="$(_compress_if_exists 'SRR12539924' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "tsc_ins_met_input_JVN_67_S17_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539925"
gz1="$(_compress_if_exists 'SRR12539925_1' || true)"
gz2="$(_compress_if_exists 'SRR12539925_2' || true)"
gzs="$(_compress_if_exists 'SRR12539925' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TscInsMetInput_JVN18_S34_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539926"
gz1="$(_compress_if_exists 'SRR12539926_1' || true)"
gz2="$(_compress_if_exists 'SRR12539926_2' || true)"
gzs="$(_compress_if_exists 'SRR12539926' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AATscUTInput_JVN8_S24_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539927"
gz1="$(_compress_if_exists 'SRR12539927_1' || true)"
gz2="$(_compress_if_exists 'SRR12539927_2' || true)"
gzs="$(_compress_if_exists 'SRR12539927' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AATscMetInput_JVN9_S25_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539928"
gz1="$(_compress_if_exists 'SRR12539928_1' || true)"
gz2="$(_compress_if_exists 'SRR12539928_2' || true)"
gzs="$(_compress_if_exists 'SRR12539928' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "aa_tsc_ins_input_JVN_68_S18_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539929"
gz1="$(_compress_if_exists 'SRR12539929_1' || true)"
gz2="$(_compress_if_exists 'SRR12539929_2' || true)"
gzs="$(_compress_if_exists 'SRR12539929' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "aa_tsc_ins_input_JVN_68_S18_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539930"
gz1="$(_compress_if_exists 'SRR12539930_1' || true)"
gz2="$(_compress_if_exists 'SRR12539930_2' || true)"
gzs="$(_compress_if_exists 'SRR12539930' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AATSCInsInput_JVN19_S35_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539931"
gz1="$(_compress_if_exists 'SRR12539931_1' || true)"
gz2="$(_compress_if_exists 'SRR12539931_2' || true)"
gzs="$(_compress_if_exists 'SRR12539931' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "aa_tsc_ins_met_input_JVN_69_S19_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539932"
gz1="$(_compress_if_exists 'SRR12539932_1' || true)"
gz2="$(_compress_if_exists 'SRR12539932_2' || true)"
gzs="$(_compress_if_exists 'SRR12539932' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "aa_tsc_ins_met_input_JVN_69_S19_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539933"
gz1="$(_compress_if_exists 'SRR12539933_1' || true)"
gz2="$(_compress_if_exists 'SRR12539933_2' || true)"
gzs="$(_compress_if_exists 'SRR12539933' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AATscInsMetInput_JVN20_S36_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539934"
gz1="$(_compress_if_exists 'SRR12539934_1' || true)"
gz2="$(_compress_if_exists 'SRR12539934_2' || true)"
gzs="$(_compress_if_exists 'SRR12539934' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AMPKUTInput_JVN10_S26_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539935"
gz1="$(_compress_if_exists 'SRR12539935_1' || true)"
gz2="$(_compress_if_exists 'SRR12539935_2' || true)"
gzs="$(_compress_if_exists 'SRR12539935' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AMPKMetInput_JVN11_S27_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539936"
gz1="$(_compress_if_exists 'SRR12539936_1' || true)"
gz2="$(_compress_if_exists 'SRR12539936_2' || true)"
gzs="$(_compress_if_exists 'SRR12539936' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ampk_ins_input_JVN_70_S20_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539937"
gz1="$(_compress_if_exists 'SRR12539937_1' || true)"
gz2="$(_compress_if_exists 'SRR12539937_2' || true)"
gzs="$(_compress_if_exists 'SRR12539937' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ampk_ins_input_JVN_70_S20_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539938"
gz1="$(_compress_if_exists 'SRR12539938_1' || true)"
gz2="$(_compress_if_exists 'SRR12539938_2' || true)"
gzs="$(_compress_if_exists 'SRR12539938' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AMPKInsInput_JVN21_S37_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539939"
gz1="$(_compress_if_exists 'SRR12539939_1' || true)"
gz2="$(_compress_if_exists 'SRR12539939_2' || true)"
gzs="$(_compress_if_exists 'SRR12539939' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ampk_ins_met_input_JVN_71_S21_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539940"
gz1="$(_compress_if_exists 'SRR12539940_1' || true)"
gz2="$(_compress_if_exists 'SRR12539940_2' || true)"
gzs="$(_compress_if_exists 'SRR12539940' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ampk_ins_met_input_JVN_71_S21_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539941"
gz1="$(_compress_if_exists 'SRR12539941_1' || true)"
gz2="$(_compress_if_exists 'SRR12539941_2' || true)"
gzs="$(_compress_if_exists 'SRR12539941' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AMPKInsMetInput_JVN22_S38_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539942"
gz1="$(_compress_if_exists 'SRR12539942_1' || true)"
gz2="$(_compress_if_exists 'SRR12539942_2' || true)"
gzs="$(_compress_if_exists 'SRR12539942' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "WTUT_JVN23_S39_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539943"
gz1="$(_compress_if_exists 'SRR12539943_1' || true)"
gz2="$(_compress_if_exists 'SRR12539943_2' || true)"
gzs="$(_compress_if_exists 'SRR12539943' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "WTMet_JVN24_S40_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539944"
gz1="$(_compress_if_exists 'SRR12539944_1' || true)"
gz2="$(_compress_if_exists 'SRR12539944_2' || true)"
gzs="$(_compress_if_exists 'SRR12539944' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "wt_ins_JVN_51_S1_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539945"
gz1="$(_compress_if_exists 'SRR12539945_1' || true)"
gz2="$(_compress_if_exists 'SRR12539945_2' || true)"
gzs="$(_compress_if_exists 'SRR12539945' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "wt_ins_JVN_51_S1_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539946"
gz1="$(_compress_if_exists 'SRR12539946_1' || true)"
gz2="$(_compress_if_exists 'SRR12539946_2' || true)"
gzs="$(_compress_if_exists 'SRR12539946' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "WTIns_JVN26_S42_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539947"
gz1="$(_compress_if_exists 'SRR12539947_1' || true)"
gz2="$(_compress_if_exists 'SRR12539947_2' || true)"
gzs="$(_compress_if_exists 'SRR12539947' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "wt_ins_met_JVN_52_S2_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539948"
gz1="$(_compress_if_exists 'SRR12539948_1' || true)"
gz2="$(_compress_if_exists 'SRR12539948_2' || true)"
gzs="$(_compress_if_exists 'SRR12539948' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "wt_ins_met_JVN_52_S2_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539949"
gz1="$(_compress_if_exists 'SRR12539949_1' || true)"
gz2="$(_compress_if_exists 'SRR12539949_2' || true)"
gzs="$(_compress_if_exists 'SRR12539949' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "WTInsMet_JVN27_S43_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539950"
gz1="$(_compress_if_exists 'SRR12539950_1' || true)"
gz2="$(_compress_if_exists 'SRR12539950_2' || true)"
gzs="$(_compress_if_exists 'SRR12539950' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "WtInk_JVN25_S41_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539951"
gz1="$(_compress_if_exists 'SRR12539951_1' || true)"
gz2="$(_compress_if_exists 'SRR12539951_2' || true)"
gzs="$(_compress_if_exists 'SRR12539951' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "wt_ink_JVN_61_S11_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539952"
gz1="$(_compress_if_exists 'SRR12539952_1' || true)"
gz2="$(_compress_if_exists 'SRR12539952_2' || true)"
gzs="$(_compress_if_exists 'SRR12539952' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "wt_ink_JVN_61_S11_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539953"
gz1="$(_compress_if_exists 'SRR12539953_1' || true)"
gz2="$(_compress_if_exists 'SRR12539953_2' || true)"
gzs="$(_compress_if_exists 'SRR12539953' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "WTInsInk_JVN28_S44_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539954"
gz1="$(_compress_if_exists 'SRR12539954_1' || true)"
gz2="$(_compress_if_exists 'SRR12539954_2' || true)"
gzs="$(_compress_if_exists 'SRR12539954' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AAUT_JVN29_S45_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539955"
gz1="$(_compress_if_exists 'SRR12539955_1' || true)"
gz2="$(_compress_if_exists 'SRR12539955_2' || true)"
gzs="$(_compress_if_exists 'SRR12539955' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AAMet_JVN30_S46_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539956"
gz1="$(_compress_if_exists 'SRR12539956_1' || true)"
gz2="$(_compress_if_exists 'SRR12539956_2' || true)"
gzs="$(_compress_if_exists 'SRR12539956' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "aa_ins_JVN_53_S3_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539957"
gz1="$(_compress_if_exists 'SRR12539957_1' || true)"
gz2="$(_compress_if_exists 'SRR12539957_2' || true)"
gzs="$(_compress_if_exists 'SRR12539957' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "aa_ins_JVN_53_S3_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539958"
gz1="$(_compress_if_exists 'SRR12539958_1' || true)"
gz2="$(_compress_if_exists 'SRR12539958_2' || true)"
gzs="$(_compress_if_exists 'SRR12539958' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AAIns_JVN31_S47_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539959"
gz1="$(_compress_if_exists 'SRR12539959_1' || true)"
gz2="$(_compress_if_exists 'SRR12539959_2' || true)"
gzs="$(_compress_if_exists 'SRR12539959' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "aa_ins_met_JVN_54_S4_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539960"
gz1="$(_compress_if_exists 'SRR12539960_1' || true)"
gz2="$(_compress_if_exists 'SRR12539960_2' || true)"
gzs="$(_compress_if_exists 'SRR12539960' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "aa_ins_met_JVN_54_S4_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539961"
gz1="$(_compress_if_exists 'SRR12539961_1' || true)"
gz2="$(_compress_if_exists 'SRR12539961_2' || true)"
gzs="$(_compress_if_exists 'SRR12539961' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AAInsMet_JVN32_S48_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539962"
gz1="$(_compress_if_exists 'SRR12539962_1' || true)"
gz2="$(_compress_if_exists 'SRR12539962_2' || true)"
gzs="$(_compress_if_exists 'SRR12539962' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TscUT_JVN33_S49_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539963"
gz1="$(_compress_if_exists 'SRR12539963_1' || true)"
gz2="$(_compress_if_exists 'SRR12539963_2' || true)"
gzs="$(_compress_if_exists 'SRR12539963' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TscMet_JVN34_S50_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539964"
gz1="$(_compress_if_exists 'SRR12539964_1' || true)"
gz2="$(_compress_if_exists 'SRR12539964_2' || true)"
gzs="$(_compress_if_exists 'SRR12539964' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "tsc_ins_JVN_55_S5_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539965"
gz1="$(_compress_if_exists 'SRR12539965_1' || true)"
gz2="$(_compress_if_exists 'SRR12539965_2' || true)"
gzs="$(_compress_if_exists 'SRR12539965' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "tsc_ins_JVN_55_S5_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539966"
gz1="$(_compress_if_exists 'SRR12539966_1' || true)"
gz2="$(_compress_if_exists 'SRR12539966_2' || true)"
gzs="$(_compress_if_exists 'SRR12539966' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TscIns_JVN35_S51_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539967"
gz1="$(_compress_if_exists 'SRR12539967_1' || true)"
gz2="$(_compress_if_exists 'SRR12539967_2' || true)"
gzs="$(_compress_if_exists 'SRR12539967' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "tsc_ins_met_JVN_56_S6_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539968"
gz1="$(_compress_if_exists 'SRR12539968_1' || true)"
gz2="$(_compress_if_exists 'SRR12539968_2' || true)"
gzs="$(_compress_if_exists 'SRR12539968' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "tsc_ins_met_JVN_56_S6_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539969"
gz1="$(_compress_if_exists 'SRR12539969_1' || true)"
gz2="$(_compress_if_exists 'SRR12539969_2' || true)"
gzs="$(_compress_if_exists 'SRR12539969' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TscInsMet_JVN36_S52_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539970"
gz1="$(_compress_if_exists 'SRR12539970_1' || true)"
gz2="$(_compress_if_exists 'SRR12539970_2' || true)"
gzs="$(_compress_if_exists 'SRR12539970' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AATscUT_JVN37_S53_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539971"
gz1="$(_compress_if_exists 'SRR12539971_1' || true)"
gz2="$(_compress_if_exists 'SRR12539971_2' || true)"
gzs="$(_compress_if_exists 'SRR12539971' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AATscMet_JVN38_S54_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539972"
gz1="$(_compress_if_exists 'SRR12539972_1' || true)"
gz2="$(_compress_if_exists 'SRR12539972_2' || true)"
gzs="$(_compress_if_exists 'SRR12539972' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "aa_tsc_ins_JVN_57_S7_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539973"
gz1="$(_compress_if_exists 'SRR12539973_1' || true)"
gz2="$(_compress_if_exists 'SRR12539973_2' || true)"
gzs="$(_compress_if_exists 'SRR12539973' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "aa_tsc_ins_JVN_57_S7_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539974"
gz1="$(_compress_if_exists 'SRR12539974_1' || true)"
gz2="$(_compress_if_exists 'SRR12539974_2' || true)"
gzs="$(_compress_if_exists 'SRR12539974' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AATSCIns_JVN39_S55_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539975"
gz1="$(_compress_if_exists 'SRR12539975_1' || true)"
gz2="$(_compress_if_exists 'SRR12539975_2' || true)"
gzs="$(_compress_if_exists 'SRR12539975' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "aa_tsc_ins__met_JVN_58_S8_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539976"
gz1="$(_compress_if_exists 'SRR12539976_1' || true)"
gz2="$(_compress_if_exists 'SRR12539976_2' || true)"
gzs="$(_compress_if_exists 'SRR12539976' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "aa_tsc_ins__met_JVN_58_S8_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539977"
gz1="$(_compress_if_exists 'SRR12539977_1' || true)"
gz2="$(_compress_if_exists 'SRR12539977_2' || true)"
gzs="$(_compress_if_exists 'SRR12539977' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AATscInsMet_JVN40_S56_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539978"
gz1="$(_compress_if_exists 'SRR12539978_1' || true)"
gz2="$(_compress_if_exists 'SRR12539978_2' || true)"
gzs="$(_compress_if_exists 'SRR12539978' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AMPKUT_JVN41_S57_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539979"
gz1="$(_compress_if_exists 'SRR12539979_1' || true)"
gz2="$(_compress_if_exists 'SRR12539979_2' || true)"
gzs="$(_compress_if_exists 'SRR12539979' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AMPKMet_JVN42_S58_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539980"
gz1="$(_compress_if_exists 'SRR12539980_1' || true)"
gz2="$(_compress_if_exists 'SRR12539980_2' || true)"
gzs="$(_compress_if_exists 'SRR12539980' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ampk_ins_JVN_59_S9_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539981"
gz1="$(_compress_if_exists 'SRR12539981_1' || true)"
gz2="$(_compress_if_exists 'SRR12539981_2' || true)"
gzs="$(_compress_if_exists 'SRR12539981' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ampk_ins_JVN_59_S9_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539982"
gz1="$(_compress_if_exists 'SRR12539982_1' || true)"
gz2="$(_compress_if_exists 'SRR12539982_2' || true)"
gzs="$(_compress_if_exists 'SRR12539982' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AMPKIns_JVN43_S59_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539983"
gz1="$(_compress_if_exists 'SRR12539983_1' || true)"
gz2="$(_compress_if_exists 'SRR12539983_2' || true)"
gzs="$(_compress_if_exists 'SRR12539983' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ampk_ins_met_JVN_60_S10_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12539984"
gz1="$(_compress_if_exists 'SRR12539984_1' || true)"
gz2="$(_compress_if_exists 'SRR12539984_2' || true)"
gzs="$(_compress_if_exists 'SRR12539984' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ampk_ins_met_JVN_60_S10_R1_001.fastq-2.gz"
fi

fasterq-dump --split-files "SRR12539985"
gz1="$(_compress_if_exists 'SRR12539985_1' || true)"
gz2="$(_compress_if_exists 'SRR12539985_2' || true)"
gzs="$(_compress_if_exists 'SRR12539985' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AMPKInsMet_JVN44_S60_R1_001.fastq.gz"
fi


# Option B: Direct download (larger .sra files)
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539898/SRR12539898"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539899/SRR12539899"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539900/SRR12539900"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539901/SRR12539901"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539902/SRR12539902"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539903/SRR12539903"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539904/SRR12539904"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539905/SRR12539905"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539906/SRR12539906"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539907/SRR12539907"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539908/SRR12539908"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539909/SRR12539909"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539910/SRR12539910"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539911/SRR12539911"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539912/SRR12539912"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539913/SRR12539913"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539914/SRR12539914"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539915/SRR12539915"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539916/SRR12539916"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539917/SRR12539917"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539918/SRR12539918"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539919/SRR12539919"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539920/SRR12539920"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539921/SRR12539921"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539922/SRR12539922"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539923/SRR12539923"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539924/SRR12539924"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539925/SRR12539925"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539926/SRR12539926"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539927/SRR12539927"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539928/SRR12539928"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539929/SRR12539929"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539930/SRR12539930"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539931/SRR12539931"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539932/SRR12539932"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539933/SRR12539933"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539934/SRR12539934"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539935/SRR12539935"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539936/SRR12539936"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539937/SRR12539937"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539938/SRR12539938"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539939/SRR12539939"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539940/SRR12539940"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539941/SRR12539941"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539942/SRR12539942"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539943/SRR12539943"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539944/SRR12539944"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539945/SRR12539945"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539946/SRR12539946"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539947/SRR12539947"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539948/SRR12539948"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539949/SRR12539949"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539950/SRR12539950"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539951/SRR12539951"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539952/SRR12539952"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539953/SRR12539953"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539954/SRR12539954"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539955/SRR12539955"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539956/SRR12539956"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539957/SRR12539957"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539958/SRR12539958"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539959/SRR12539959"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539960/SRR12539960"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539961/SRR12539961"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539962/SRR12539962"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539963/SRR12539963"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539964/SRR12539964"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539965/SRR12539965"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539966/SRR12539966"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539967/SRR12539967"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539968/SRR12539968"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539969/SRR12539969"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539970/SRR12539970"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539971/SRR12539971"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539972/SRR12539972"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539973/SRR12539973"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539974/SRR12539974"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539975/SRR12539975"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539976/SRR12539976"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539977/SRR12539977"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539978/SRR12539978"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539979/SRR12539979"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539980/SRR12539980"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539981/SRR12539981"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539982/SRR12539982"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539983/SRR12539983"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539984/SRR12539984"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539985/SRR12539985"

# --- Additional data files ---
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539958/SRR12539958"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539957/SRR12539957"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539956/SRR12539956"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539961/SRR12539961"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539960/SRR12539960"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539959/SRR12539959"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539955/SRR12539955"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539974/SRR12539974"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539973/SRR12539973"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539972/SRR12539972"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539977/SRR12539977"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539976/SRR12539976"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539975/SRR12539975"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539971/SRR12539971"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539970/SRR12539970"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539954/SRR12539954"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539982/SRR12539982"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539981/SRR12539981"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539980/SRR12539980"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539985/SRR12539985"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539984/SRR12539984"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539983/SRR12539983"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539979/SRR12539979"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539978/SRR12539978"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539966/SRR12539966"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539965/SRR12539965"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539964/SRR12539964"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539969/SRR12539969"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539968/SRR12539968"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539967/SRR12539967"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539963/SRR12539963"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539962/SRR12539962"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539950/SRR12539950"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539952/SRR12539952"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539951/SRR12539951"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539953/SRR12539953"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539946/SRR12539946"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539945/SRR12539945"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539944/SRR12539944"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539949/SRR12539949"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539948/SRR12539948"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539947/SRR12539947"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539943/SRR12539943"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539914/SRR12539914"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539913/SRR12539913"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539912/SRR12539912"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539917/SRR12539917"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539916/SRR12539916"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539915/SRR12539915"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539911/SRR12539911"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539930/SRR12539930"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539929/SRR12539929"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539928/SRR12539928"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539933/SRR12539933"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539932/SRR12539932"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539931/SRR12539931"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539927/SRR12539927"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539926/SRR12539926"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539910/SRR12539910"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539938/SRR12539938"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539937/SRR12539937"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539936/SRR12539936"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539941/SRR12539941"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539940/SRR12539940"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539939/SRR12539939"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539935/SRR12539935"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539934/SRR12539934"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539922/SRR12539922"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539921/SRR12539921"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539920/SRR12539920"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539925/SRR12539925"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539924/SRR12539924"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539923/SRR12539923"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539919/SRR12539919"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539918/SRR12539918"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539906/SRR12539906"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539908/SRR12539908"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539907/SRR12539907"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539909/SRR12539909"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539902/SRR12539902"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539901/SRR12539901"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539900/SRR12539900"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539905/SRR12539905"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539904/SRR12539904"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539903/SRR12539903"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539899/SRR12539899"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539898/SRR12539898"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12539942/SRR12539942"

echo "Download complete. Files saved to $OUTDIR"