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GSE146726

GSE GEO
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RNA-Seq of circCDYL knockdown (KD) samples in HepG2, J82, and UMUC3 cells and of GRWD1, IGF2BP1, and IGF2BP2 knockdown (KD) samples in J82 and UMUC3 cells

Organism: Homo sapiens
Platform: GPL18573
Samples: 36
Experiment Types:
Expression profiling by high throughput sequencing
Submitted: Mar 10 2020
Last Updated: Dec 11 2020
Status: Public on Nov 11 2020
Contact: Trine Line,Hauge,Okholm (Aarhus University Hospital)

Relations

BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA611768 SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP252209

Summary

We profile gene expression upon circCDYL KD in HepG2 cells and in two bladder cancer cell lines J82 and UMUC3 as well as upon knockdown of the RNA binding proteins (RBP) GRWD1, IGF2BP1, and IGF2BP2 in J82 and UMUC3

Overall Design

Cells were treated with a control scramble (scr) siRNA or an siRNA that specifically knock down the expression of circCDYL or the RBP of interest. mRNA profiling upon treatment were generated using QuantSeq

Analysis (4 steps)

View Data Processing
Processing steps for GSE146726
  1. Fastq files demultiplexed using Illumina’s bcl2fastq v2.20.0.422
  2. Adapters removed using Trim Galore v0.4.1
  3. Reads mapped using TopHat2 and Bowtie2 (version 2.1.1)
  4. Read counts were estimated using HTSeq (v0.6.1p1)

Supplementary Files (9)

GSE146726_HepG2_DESeq2_circCDYL.txt.gz Download
GSE146726_J82_DESeq2_GRWD1.txt.gz Download
GSE146726_J82_DESeq2_IGF2BP1.txt.gz Download
GSE146726_J82_DESeq2_IGF2BP2.txt.gz Download
GSE146726_J82_DESeq2_circCDYL.txt.gz Download
GSE146726_UMUC3_DESeq2_GRWD1.txt.gz Download
GSE146726_UMUC3_DESeq2_IGF2BP1.txt.gz Download
GSE146726_UMUC3_DESeq2_IGF2BP2.txt.gz Download
GSE146726_UMUC3_DESeq2_circCDYL.txt.gz Download
GEO Samples (36)
GSM4404824 GSM4404825 GSM4404826 GSM4404827 GSM4404828 GSM4404829 GSM4404830 GSM4404831 GSM4404832 GSM4404833 GSM4404834 GSM4404835 GSM4404836 GSM4404837 GSM4404838 GSM4404839 GSM4404840 GSM4404841 GSM4404842 GSM4404843 GSM4404844 GSM4404845 GSM4404846 GSM4404847 GSM4404848 GSM4404849 GSM4404850 GSM4404851 GSM4404852 GSM4404853 GSM4404854 GSM4404855 GSM4404856 GSM4404857 GSM4404858 GSM4404859

Dataset Citations (1)

Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression.
PMID 33287884 · 2020 · Genome medicine
Trine Line Hauge Okholm, Shashank Sathe, Samuel S Park, Andreas Bjerregaard Kamstrup, Asta Mannstaedt Rasmussen, Archana Shankar, Zong Ming Chua, Niels Fristrup, Morten Muhlig Nielsen, Søren Vang, Lars Dyrskjøt, Stefan Aigner, Christian Kroun Damgaard, Gene W Yeo, Jakob Skou Pedersen

SRA Experiments (36) and Runs (144)

Total: 14730 MB
SRX7887788 SRP252209 RNA-Seq SINGLE
GSM4404824: HepG2_circCDYL_A; Homo sapiens; RNA-Seq
Sample: SRS6297316
BioProject: PRJNA611768
BioSample: SAMN14345349
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Hepatocellular carcinoma
cell line: HepG2
sirna: circCDYL
triplicate: A
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281549 4210099 319967524 124.28 Cdyl_N205-181_N205-181_S16_L001_R1_001.fastq.gz, SRR11281549, SRR1128… SRA
SRR11281550 4110207 312375732 122.11 Cdyl_N205-181_N205-181_S16_L002_R1_001.fastq.gz, SRR11281550, SRR1128… SRA
SRR11281551 4248732 322903632 125.63 Cdyl_N205-181_N205-181_S16_L003_R1_001.fastq.gz, SRR11281551, SRR1128… SRA
SRR11281552 4144094 314951144 123.0 Cdyl_N205-181_N205-181_S16_L004_R1_001.fastq.gz, SRR11281552, SRR1128… SRA
SRX7887789 SRP252209 RNA-Seq SINGLE
GSM4404825: HepG2_circCDYL_B; Homo sapiens; RNA-Seq
Sample: SRS6297317
BioProject: PRJNA611768
BioSample: SAMN14345348
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Hepatocellular carcinoma
cell line: HepG2
sirna: circCDYL
triplicate: B
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281553 3203940 243499440 95.25 Cdyl_N205-182_N205-182_S17_L001_R1_001.fastq.gz, SRR11281553, SRR1128… SRA
SRR11281554 3132396 238062096 93.74 Cdyl_N205-182_N205-182_S17_L002_R1_001.fastq.gz, SRR11281554, SRR1128… SRA
SRR11281555 3244596 246589296 96.65 Cdyl_N205-182_N205-182_S17_L003_R1_001.fastq.gz, SRR11281555, SRR1128… SRA
SRR11281556 3162579 240356004 94.58 Cdyl_N205-182_N205-182_S17_L004_R1_001.fastq.gz, SRR11281556, SRR1128… SRA
SRX7887790 SRP252209 RNA-Seq SINGLE
GSM4404826: HepG2_circCDYL_C; Homo sapiens; RNA-Seq
Sample: SRS6297327
BioProject: PRJNA611768
BioSample: SAMN14345347
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Hepatocellular carcinoma
cell line: HepG2
sirna: circCDYL
triplicate: C
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281557 3128141 237738716 92.45 Cdyl_N205-183_N205-183_S18_L001_R1_001.fastq.gz, SRR11281557, SRR1128… SRA
SRR11281558 3046538 231536888 90.58 Cdyl_N205-183_N205-183_S18_L002_R1_001.fastq.gz, SRR11281558, SRR1128… SRA
SRR11281559 3156238 239874088 93.38 Cdyl_N205-183_N205-183_S18_L003_R1_001.fastq.gz, SRR11281559, SRR1128… SRA
SRR11281560 3079118 234012968 91.5 Cdyl_N205-183_N205-183_S18_L004_R1_001.fastq.gz, SRR11281560, SRR1128… SRA
SRX7887791 SRP252209 RNA-Seq SINGLE
GSM4404827: HepG2_scr_A; Homo sapiens; RNA-Seq
Sample: SRS6297318
BioProject: PRJNA611768
BioSample: SAMN14345346
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Hepatocellular carcinoma
cell line: HepG2
sirna: scr
triplicate: A
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281561 3106162 236068312 91.72 scramble_N205-184_N205-184_S19_L001_R1_001.fastq.gz, SRR11281561, SRR… SRA
SRR11281562 3029504 230242304 90.03 scramble_N205-184_N205-184_S19_L002_R1_001.fastq.gz, SRR11281562, SRR… SRA
SRR11281563 3132765 238090140 92.63 scramble_N205-184_N205-184_S19_L003_R1_001.fastq.gz, SRR11281563, SRR… SRA
SRR11281564 3058855 232472980 90.83 scramble_N205-184_N205-184_S19_L004_R1_001.fastq.gz, SRR11281564, SRR… SRA
SRX7887792 SRP252209 RNA-Seq SINGLE
GSM4404828: HepG2_scr_B; Homo sapiens; RNA-Seq
Sample: SRS6297319
BioProject: PRJNA611768
BioSample: SAMN14345345
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Hepatocellular carcinoma
cell line: HepG2
sirna: scr
triplicate: B
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281565 2996906 227764856 88.39 scramble_N205-185_N205-185_S20_L001_R1_001.fastq.gz, SRR11281565, SRR… SRA
SRR11281566 2927443 222485668 86.9 scramble_N205-185_N205-185_S20_L002_R1_001.fastq.gz, SRR11281566, SRR… SRA
SRR11281567 3025470 229935720 89.33 scramble_N205-185_N205-185_S20_L003_R1_001.fastq.gz, SRR11281567, SRR… SRA
SRR11281568 2957652 224781552 87.73 scramble_N205-185_N205-185_S20_L004_R1_001.fastq.gz, SRR11281568, SRR… SRA
SRX7887793 SRP252209 RNA-Seq SINGLE
GSM4404829: HepG2_scr_C; Homo sapiens; RNA-Seq
Sample: SRS6297320
BioProject: PRJNA611768
BioSample: SAMN14345344
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Hepatocellular carcinoma
cell line: HepG2
sirna: scr
triplicate: C
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281569 3294631 250391956 97.63 scramble_N205-186_N205-186_S21_L001_R1_001.fastq.gz, SRR11281569, SRR… SRA
SRR11281570 3212314 244135864 95.75 scramble_N205-186_N205-186_S21_L002_R1_001.fastq.gz, SRR11281570, SRR… SRA
SRR11281571 3333677 253359452 98.88 scramble_N205-186_N205-186_S21_L003_R1_001.fastq.gz, SRR11281571, SRR… SRA
SRR11281572 3254756 247361456 96.94 scramble_N205-186_N205-186_S21_L004_R1_001.fastq.gz, SRR11281572, SRR… SRA
SRX7887794 SRP252209 RNA-Seq SINGLE
GSM4404830: UMUC3_circCDYL_A; Homo sapiens; RNA-Seq
Sample: SRS6297321
BioProject: PRJNA611768
BioSample: SAMN14345343
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: UMUC3
sirna: circCDYL
triplicate: A
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281573 3192292 242614192 94.51 Cdyl_N205-200_N205-200_S35_L001_R1_001.fastq.gz, SRR11281573, SRR1128… SRA
SRR11281574 3111888 236503488 92.68 Cdyl_N205-200_N205-200_S35_L002_R1_001.fastq.gz, SRR11281574, SRR1128… SRA
SRR11281575 3224932 245094832 95.56 Cdyl_N205-200_N205-200_S35_L003_R1_001.fastq.gz, SRR11281575, SRR1128… SRA
SRR11281576 3140772 238698672 93.47 Cdyl_N205-200_N205-200_S35_L004_R1_001.fastq.gz, SRR11281576, SRR1128… SRA
SRX7887795 SRP252209 RNA-Seq SINGLE
GSM4404831: UMUC3_circCDYL_B; Homo sapiens; RNA-Seq
Sample: SRS6297322
BioProject: PRJNA611768
BioSample: SAMN14345342
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: UMUC3
sirna: circCDYL
triplicate: B
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281577 3295011 250420836 97.96 Cdyl_N205-201_N205-201_S36_L001_R1_001.fastq.gz, SRR11281577, SRR1128… SRA
SRR11281578 3219455 244678580 96.36 Cdyl_N205-201_N205-201_S36_L002_R1_001.fastq.gz, SRR11281578, SRR1128… SRA
SRR11281579 3343744 254124544 99.56 Cdyl_N205-201_N205-201_S36_L003_R1_001.fastq.gz, SRR11281579, SRR1128… SRA
SRR11281580 3258692 247660592 97.47 Cdyl_N205-201_N205-201_S36_L004_R1_001.fastq.gz, SRR11281580, SRR1128… SRA
SRX7887796 SRP252209 RNA-Seq SINGLE
GSM4404832: UMUC3_circCDYL_C; Homo sapiens; RNA-Seq
Sample: SRS6297323
BioProject: PRJNA611768
BioSample: SAMN14345341
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: UMUC3
sirna: circCDYL
triplicate: C
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281581 4459254 338903304 132.61 Cdyl_N205-202_N205-202_S37_L001_R1_001.fastq.gz, SRR11281581, SRR1128… SRA
SRR11281582 4347428 330404528 130.05 Cdyl_N205-202_N205-202_S37_L002_R1_001.fastq.gz, SRR11281582, SRR1128… SRA
SRR11281583 4525726 343955176 134.8 Cdyl_N205-202_N205-202_S37_L003_R1_001.fastq.gz, SRR11281583, SRR1128… SRA
SRR11281584 4397130 334181880 131.46 Cdyl_N205-202_N205-202_S37_L004_R1_001.fastq.gz, SRR11281584, SRR1128… SRA
SRX7887797 SRP252209 RNA-Seq SINGLE
GSM4404833: UMUC3_GRWD1_A; Homo sapiens; RNA-Seq
Sample: SRS6297324
BioProject: PRJNA611768
BioSample: SAMN14345340
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: UMUC3
sirna: GRWD1
triplicate: A
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281585 3398353 258274828 100.84 GRWD1_N205-191_N205-191_S26_L001_R1_001.fastq.gz, SRR11281585, SRR112… SRA
SRR11281586 3318314 252191864 99.12 GRWD1_N205-191_N205-191_S26_L002_R1_001.fastq.gz, SRR11281586, SRR112… SRA
SRR11281587 3441216 261532416 102.21 GRWD1_N205-191_N205-191_S26_L003_R1_001.fastq.gz, SRR11281587, SRR112… SRA
SRR11281588 3350652 254649552 100.0 GRWD1_N205-191_N205-191_S26_L004_R1_001.fastq.gz, SRR11281588, SRR112… SRA
SRX7887798 SRP252209 RNA-Seq SINGLE
GSM4404834: UMUC3_GRWD1_B; Homo sapiens; RNA-Seq
Sample: SRS6297325
BioProject: PRJNA611768
BioSample: SAMN14345339
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: UMUC3
sirna: GRWD1
triplicate: B
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281589 3861897 293504172 114.6 GRWD1_N205-192_N205-192_S27_L001_R1_001.fastq.gz, SRR11281589, SRR112… SRA
SRR11281590 3784183 287597908 113.06 GRWD1_N205-192_N205-192_S27_L002_R1_001.fastq.gz, SRR11281590, SRR112… SRA
SRR11281591 3909902 297152552 116.21 GRWD1_N205-192_N205-192_S27_L003_R1_001.fastq.gz, SRR11281591, SRR112… SRA
SRR11281592 3819790 290304040 114.06 GRWD1_N205-192_N205-192_S27_L004_R1_001.fastq.gz, SRR11281592, SRR112… SRA
SRX7887799 SRP252209 RNA-Seq SINGLE
GSM4404835: UMUC3_GRWD1_C; Homo sapiens; RNA-Seq
Sample: SRS6297326
BioProject: PRJNA611768
BioSample: SAMN14345338
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: UMUC3
sirna: GRWD1
triplicate: C
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281593 3356342 255081992 99.15 GRWD1_N205-193_N205-193_S28_L001_R1_001.fastq.gz, SRR11281593, SRR112… SRA
SRR11281594 3271537 248636812 97.21 GRWD1_N205-193_N205-193_S28_L002_R1_001.fastq.gz, SRR11281594, SRR112… SRA
SRR11281595 3387194 257426744 100.13 GRWD1_N205-193_N205-193_S28_L003_R1_001.fastq.gz, SRR11281595, SRR112… SRA
SRR11281596 3310058 251564408 98.27 GRWD1_N205-193_N205-193_S28_L004_R1_001.fastq.gz, SRR11281596, SRR112… SRA
SRX7887800 SRP252209 RNA-Seq SINGLE
GSM4404836: UMUC3_IGF2BP1_A; Homo sapiens; RNA-Seq
Sample: SRS6297328
BioProject: PRJNA611768
BioSample: SAMN14345337
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: UMUC3
sirna: IGF2BP1
triplicate: A
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281597 3817507 290130532 113.36 IGF2BP1_N205-188_N205-188_S23_L001_R1_001.fastq.gz, SRR11281597, SRR1… SRA
SRR11281598 3733238 283726088 111.64 IGF2BP1_N205-188_N205-188_S23_L002_R1_001.fastq.gz, SRR11281598, SRR1… SRA
SRR11281599 3860247 293378772 114.82 IGF2BP1_N205-188_N205-188_S23_L003_R1_001.fastq.gz, SRR11281599, SRR1… SRA
SRR11281600 3766911 286285236 112.58 IGF2BP1_N205-188_N205-188_S23_L004_R1_001.fastq.gz, SRR11281600, SRR1… SRA
SRX7887801 SRP252209 RNA-Seq SINGLE
GSM4404837: UMUC3_IGF2BP1_B; Homo sapiens; RNA-Seq
Sample: SRS6297329
BioProject: PRJNA611768
BioSample: SAMN14345336
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: UMUC3
sirna: IGF2BP1
triplicate: B
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281601 3894717 295998492 116.31 IGF2BP1_N205-189_N205-189_S24_L001_R1_001.fastq.gz, SRR11281601, SRR1… SRA
SRR11281602 3808889 289475564 114.51 IGF2BP1_N205-189_N205-189_S24_L002_R1_001.fastq.gz, SRR11281602, SRR1… SRA
SRR11281603 3959486 300920936 118.45 IGF2BP1_N205-189_N205-189_S24_L003_R1_001.fastq.gz, SRR11281603, SRR1… SRA
SRR11281604 3854011 292904836 115.77 IGF2BP1_N205-189_N205-189_S24_L004_R1_001.fastq.gz, SRR11281604, SRR1… SRA
SRX7887802 SRP252209 RNA-Seq SINGLE
GSM4404838: UMUC3_IGF2BP1_C; Homo sapiens; RNA-Seq
Sample: SRS6297330
BioProject: PRJNA611768
BioSample: SAMN14345335
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: UMUC3
sirna: IGF2BP1
triplicate: C
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281605 2814905 213932780 83.16 IGF2BP1_N205-190_N205-190_S25_L001_R1_001.fastq.gz, SRR11281605, SRR1… SRA
SRR11281606 2749847 208988372 81.82 IGF2BP1_N205-190_N205-190_S25_L002_R1_001.fastq.gz, SRR11281606, SRR1… SRA
SRR11281607 2838272 215708672 83.97 IGF2BP1_N205-190_N205-190_S25_L003_R1_001.fastq.gz, SRR11281607, SRR1… SRA
SRR11281608 2773601 210793676 82.48 IGF2BP1_N205-190_N205-190_S25_L004_R1_001.fastq.gz, SRR11281608, SRR1… SRA
SRX7887803 SRP252209 RNA-Seq SINGLE
GSM4404839: UMUC3_IGF2BP2_A; Homo sapiens; RNA-Seq
Sample: SRS6297331
BioProject: PRJNA611768
BioSample: SAMN14345334
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: UMUC3
sirna: IGF2BP2
triplicate: A
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281609 3425874 260366424 101.19 IGF2BP2_N205-197_N205-197_S32_L001_R1_001.fastq.gz, SRR11281609, SRR1… SRA
SRR11281610 3348748 254504848 99.53 IGF2BP2_N205-197_N205-197_S32_L002_R1_001.fastq.gz, SRR11281610, SRR1… SRA
SRR11281611 3468192 263582592 102.55 IGF2BP2_N205-197_N205-197_S32_L003_R1_001.fastq.gz, SRR11281611, SRR1… SRA
SRR11281612 3380247 256898772 100.38 IGF2BP2_N205-197_N205-197_S32_L004_R1_001.fastq.gz, SRR11281612, SRR1… SRA
SRX7887804 SRP252209 RNA-Seq SINGLE
GSM4404840: UMUC3_IGF2BP2_B; Homo sapiens; RNA-Seq
Sample: SRS6297332
BioProject: PRJNA611768
BioSample: SAMN14345333
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: UMUC3
sirna: IGF2BP2
triplicate: B
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281613 3261184 247849984 95.9 IGF2BP2_N205-198_N205-198_S33_L001_R1_001.fastq.gz, SRR11281613, SRR1… SRA
SRR11281614 3172059 241076484 93.89 IGF2BP2_N205-198_N205-198_S33_L002_R1_001.fastq.gz, SRR11281614, SRR1… SRA
SRR11281615 3280363 249307588 96.55 IGF2BP2_N205-198_N205-198_S33_L003_R1_001.fastq.gz, SRR11281615, SRR1… SRA
SRR11281616 3201162 243288312 94.67 IGF2BP2_N205-198_N205-198_S33_L004_R1_001.fastq.gz, SRR11281616, SRR1… SRA
SRX7887805 SRP252209 RNA-Seq SINGLE
GSM4404841: UMUC3_IGF2BP2_C; Homo sapiens; RNA-Seq
Sample: SRS6297333
BioProject: PRJNA611768
BioSample: SAMN14345332
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: UMUC3
sirna: IGF2BP2
triplicate: C
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281617 3161871 240302196 93.39 IGF2BP2_N205-199_N205-199_S34_L001_R1_001.fastq.gz, SRR11281617, SRR1… SRA
SRR11281618 3078314 233951864 91.47 IGF2BP2_N205-199_N205-199_S34_L002_R1_001.fastq.gz, SRR11281618, SRR1… SRA
SRR11281619 3194939 242815364 94.48 IGF2BP2_N205-199_N205-199_S34_L003_R1_001.fastq.gz, SRR11281619, SRR1… SRA
SRR11281620 3114900 236732400 92.52 IGF2BP2_N205-199_N205-199_S34_L004_R1_001.fastq.gz, SRR11281620, SRR1… SRA
SRX7887806 SRP252209 RNA-Seq SINGLE
GSM4404842: UMUC3_scr_A; Homo sapiens; RNA-Seq
Sample: SRS6297345
BioProject: PRJNA611768
BioSample: SAMN14345331
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: UMUC3
sirna: scr
triplicate: A
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281621 2861501 217474076 85.06 scramble_N205-194_N205-194_S29_L001_R1_001.fastq.gz, SRR11281621, SRR… SRA
SRR11281622 2789400 211994400 83.49 scramble_N205-194_N205-194_S29_L002_R1_001.fastq.gz, SRR11281622, SRR… SRA
SRR11281623 2886170 219348920 85.93 scramble_N205-194_N205-194_S29_L003_R1_001.fastq.gz, SRR11281623, SRR… SRA
SRR11281624 2818864 214233664 84.28 scramble_N205-194_N205-194_S29_L004_R1_001.fastq.gz, SRR11281624, SRR… SRA
SRX7887807 SRP252209 RNA-Seq SINGLE
GSM4404843: UMUC3_scr_B; Homo sapiens; RNA-Seq
Sample: SRS6297334
BioProject: PRJNA611768
BioSample: SAMN14345330
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: UMUC3
sirna: scr
triplicate: B
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281625 3453262 262447912 101.9 scramble_N205-195_N205-195_S30_L001_R1_001.fastq.gz, SRR11281625, SRR… SRA
SRR11281626 3384134 257194184 100.49 scramble_N205-195_N205-195_S30_L002_R1_001.fastq.gz, SRR11281626, SRR… SRA
SRR11281627 3498837 265911612 103.41 scramble_N205-195_N205-195_S30_L003_R1_001.fastq.gz, SRR11281627, SRR… SRA
SRR11281628 3422177 260085452 101.56 scramble_N205-195_N205-195_S30_L004_R1_001.fastq.gz, SRR11281628, SRR… SRA
SRX7887808 SRP252209 RNA-Seq SINGLE
GSM4404844: UMUC3_scr_C; Homo sapiens; RNA-Seq
Sample: SRS6297335
BioProject: PRJNA611768
BioSample: SAMN14345329
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: UMUC3
sirna: scr
triplicate: C
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281629 3724541 283065116 111.06 scramble_N205-196_N205-196_S31_L001_R1_001.fastq.gz, SRR11281629, SRR… SRA
SRR11281630 3639166 276576616 109.25 scramble_N205-196_N205-196_S31_L002_R1_001.fastq.gz, SRR11281630, SRR… SRA
SRR11281631 3767619 286339044 112.55 scramble_N205-196_N205-196_S31_L003_R1_001.fastq.gz, SRR11281631, SRR… SRA
SRR11281632 3675799 279360724 110.29 scramble_N205-196_N205-196_S31_L004_R1_001.fastq.gz, SRR11281632, SRR… SRA
SRX7887809 SRP252209 RNA-Seq SINGLE
GSM4404845: J82_circCDYL_A; Homo sapiens; RNA-Seq
Sample: SRS6297336
BioProject: PRJNA611768
BioSample: SAMN14345328
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: J82
sirna: circCDYL
triplicate: A
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281633 3324244 252642544 98.21 Cdyl_N205-178_N205-178_S13_L001_R1_001.fastq.gz, SRR11281633, SRR1128… SRA
SRR11281634 3237881 246078956 96.27 Cdyl_N205-178_N205-178_S13_L002_R1_001.fastq.gz, SRR11281634, SRR1128… SRA
SRR11281635 3347437 254405212 98.97 Cdyl_N205-178_N205-178_S13_L003_R1_001.fastq.gz, SRR11281635, SRR1128… SRA
SRR11281636 3276131 248985956 97.28 Cdyl_N205-178_N205-178_S13_L004_R1_001.fastq.gz, SRR11281636, SRR1128… SRA
SRX7887810 SRP252209 RNA-Seq SINGLE
GSM4404846: J82_circCDYL_B; Homo sapiens; RNA-Seq
Sample: SRS6297337
BioProject: PRJNA611768
BioSample: SAMN14345327
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: J82
sirna: circCDYL
triplicate: B
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281637 3139300 238586800 92.41 Cdyl_N205-179_N205-179_S14_L001_R1_001.fastq.gz, SRR11281637, SRR1128… SRA
SRR11281638 3067811 233153636 90.85 Cdyl_N205-179_N205-179_S14_L002_R1_001.fastq.gz, SRR11281638, SRR1128… SRA
SRR11281639 3164175 240477300 93.18 Cdyl_N205-179_N205-179_S14_L003_R1_001.fastq.gz, SRR11281639, SRR1128… SRA
SRR11281640 3099237 235542012 91.67 Cdyl_N205-179_N205-179_S14_L004_R1_001.fastq.gz, SRR11281640, SRR1128… SRA
SRX7887811 SRP252209 RNA-Seq SINGLE
GSM4404847: J82_circCDYL_C; Homo sapiens; RNA-Seq
Sample: SRS6297338
BioProject: PRJNA611768
BioSample: SAMN14345326
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: J82
sirna: circCDYL
triplicate: C
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281641 3381891 257023716 100.26 Cdyl_N205-180_N205-180_S15_L001_R1_001.fastq.gz, SRR11281641, SRR1128… SRA
SRR11281642 3292048 250195648 98.27 Cdyl_N205-180_N205-180_S15_L002_R1_001.fastq.gz, SRR11281642, SRR1128… SRA
SRR11281643 3422809 260133484 101.64 Cdyl_N205-180_N205-180_S15_L003_R1_001.fastq.gz, SRR11281643, SRR1128… SRA
SRR11281644 3326173 252789148 99.18 Cdyl_N205-180_N205-180_S15_L004_R1_001.fastq.gz, SRR11281644, SRR1128… SRA
SRX7887812 SRP252209 RNA-Seq SINGLE
GSM4404848: J82_GRWD1_A; Homo sapiens; RNA-Seq
Sample: SRS6297339
BioProject: PRJNA611768
BioSample: SAMN14345325
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: J82
sirna: GRWD1
triplicate: A
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281645 2919435 221877060 86.27 GRWD1_N205-169_N205-169_S4_L001_R1_001.fastq.gz, SRR11281645, SRR1128… SRA
SRR11281646 2851066 216681016 84.76 GRWD1_N205-169_N205-169_S4_L002_R1_001.fastq.gz, SRR11281646, SRR1128… SRA
SRR11281647 2947895 224040020 87.19 GRWD1_N205-169_N205-169_S4_L003_R1_001.fastq.gz, SRR11281647, SRR1128… SRA
SRR11281648 2881008 218956608 85.56 GRWD1_N205-169_N205-169_S4_L004_R1_001.fastq.gz, SRR11281648, SRR1128… SRA
SRX7887813 SRP252209 RNA-Seq SINGLE
GSM4404849: J82_GRWD1_B; Homo sapiens; RNA-Seq
Sample: SRS6297340
BioProject: PRJNA611768
BioSample: SAMN14345324
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: J82
sirna: GRWD1
triplicate: B
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281649 3419777 259903052 101.46 GRWD1_N205-170_N205-170_S5_L001_R1_001.fastq.gz, SRR11281649, SRR1128… SRA
SRR11281650 3353031 254830356 100.22 GRWD1_N205-170_N205-170_S5_L002_R1_001.fastq.gz, SRR11281650, SRR1128… SRA
SRR11281651 3455105 262587980 102.7 GRWD1_N205-170_N205-170_S5_L003_R1_001.fastq.gz, SRR11281651, SRR1128… SRA
SRR11281652 3376761 256633836 100.82 GRWD1_N205-170_N205-170_S5_L004_R1_001.fastq.gz, SRR11281652, SRR1128… SRA
SRX7887814 SRP252209 RNA-Seq SINGLE
GSM4404850: J82_GRWD1_C; Homo sapiens; RNA-Seq
Sample: SRS6297341
BioProject: PRJNA611768
BioSample: SAMN14345323
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: J82
sirna: GRWD1
triplicate: C
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281653 2688584 204332384 79.75 GRWD1_N205-171_N205-171_S6_L001_R1_001.fastq.gz, SRR11281653, SRR1128… SRA
SRR11281654 2591516 196955216 77.56 GRWD1_N205-171_N205-171_S6_L002_R1_001.fastq.gz, SRR11281654, SRR1128… SRA
SRR11281655 2690888 204507488 80.16 GRWD1_N205-171_N205-171_S6_L003_R1_001.fastq.gz, SRR11281655, SRR1128… SRA
SRR11281656 2597501 197410076 77.7 GRWD1_N205-171_N205-171_S6_L004_R1_001.fastq.gz, SRR11281656, SRR1128… SRA
SRX7887815 SRP252209 RNA-Seq SINGLE
GSM4404851: J82_IGF2BP1_A; Homo sapiens; RNA-Seq
Sample: SRS6297342
BioProject: PRJNA611768
BioSample: SAMN14345322
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: J82
sirna: IGF2BP1
triplicate: A
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281657 5826164 442788464 171.53 IGF2BP1_N205-166_N205-166_S1_L001_R1_001.fastq.gz, SRR11281657, SRR11… SRA
SRR11281658 5688714 432342264 168.48 IGF2BP1_N205-166_N205-166_S1_L002_R1_001.fastq.gz, SRR11281658, SRR11… SRA
SRR11281659 5877392 446681792 173.11 IGF2BP1_N205-166_N205-166_S1_L003_R1_001.fastq.gz, SRR11281659, SRR11… SRA
SRR11281660 5752791 437212116 170.2 IGF2BP1_N205-166_N205-166_S1_L004_R1_001.fastq.gz, SRR11281660, SRR11… SRA
SRX7887816 SRP252209 RNA-Seq SINGLE
GSM4404852: J82_IGF2BP1_B; Homo sapiens; RNA-Seq
Sample: SRS6297343
BioProject: PRJNA611768
BioSample: SAMN14345321
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: J82
sirna: IGF2BP1
triplicate: B
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281661 3627502 275690152 107.33 IGF2BP1_N205-167_N205-167_S2_L001_R1_001.fastq.gz, SRR11281661, SRR11… SRA
SRR11281662 3539908 269033008 105.43 IGF2BP1_N205-167_N205-167_S2_L002_R1_001.fastq.gz, SRR11281662, SRR11… SRA
SRR11281663 3660349 278186524 108.42 IGF2BP1_N205-167_N205-167_S2_L003_R1_001.fastq.gz, SRR11281663, SRR11… SRA
SRR11281664 3578865 271993740 106.47 IGF2BP1_N205-167_N205-167_S2_L004_R1_001.fastq.gz, SRR11281664, SRR11… SRA
SRX7887817 SRP252209 RNA-Seq SINGLE
GSM4404853: J82_IGF2BP1_C; Homo sapiens; RNA-Seq
Sample: SRS6297344
BioProject: PRJNA611768
BioSample: SAMN14345320
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: J82
sirna: IGF2BP1
triplicate: C
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281665 3010455 228794580 88.64 IGF2BP1_N205-168_N205-168_S3_L001_R1_001.fastq.gz, SRR11281665, SRR11… SRA
SRR11281666 2940884 223507184 87.15 IGF2BP1_N205-168_N205-168_S3_L002_R1_001.fastq.gz, SRR11281666, SRR11… SRA
SRR11281667 3031247 230374772 89.29 IGF2BP1_N205-168_N205-168_S3_L003_R1_001.fastq.gz, SRR11281667, SRR11… SRA
SRR11281668 2971388 225825488 87.95 IGF2BP1_N205-168_N205-168_S3_L004_R1_001.fastq.gz, SRR11281668, SRR11… SRA
SRX7887818 SRP252209 RNA-Seq SINGLE
GSM4404854: J82_IGF2BP2_A; Homo sapiens; RNA-Seq
Sample: SRS6297346
BioProject: PRJNA611768
BioSample: SAMN14345319
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: J82
sirna: IGF2BP2
triplicate: A
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281669 2912781 221371356 86.12 IGF2BP2_N205-175_N205-175_S10_L001_R1_001.fastq.gz, SRR11281669, SRR1… SRA
SRR11281670 2839513 215802988 84.47 IGF2BP2_N205-175_N205-175_S10_L002_R1_001.fastq.gz, SRR11281670, SRR1… SRA
SRR11281671 2940522 223479672 87.01 IGF2BP2_N205-175_N205-175_S10_L003_R1_001.fastq.gz, SRR11281671, SRR1… SRA
SRR11281672 2868096 217975296 85.24 IGF2BP2_N205-175_N205-175_S10_L004_R1_001.fastq.gz, SRR11281672, SRR1… SRA
SRX7887819 SRP252209 RNA-Seq SINGLE
GSM4404855: J82_IGF2BP2_B; Homo sapiens; RNA-Seq
Sample: SRS6297347
BioProject: PRJNA611768
BioSample: SAMN14345368
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: J82
sirna: IGF2BP2
triplicate: B
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281673 3473598 263993448 102.45 IGF2BP2_N205-176_N205-176_S11_L001_R1_001.fastq.gz, SRR11281673, SRR1… SRA
SRR11281674 3390845 257704220 100.7 IGF2BP2_N205-176_N205-176_S11_L002_R1_001.fastq.gz, SRR11281674, SRR1… SRA
SRR11281675 3502584 266196384 103.45 IGF2BP2_N205-176_N205-176_S11_L003_R1_001.fastq.gz, SRR11281675, SRR1… SRA
SRR11281676 3422806 260133256 101.57 IGF2BP2_N205-176_N205-176_S11_L004_R1_001.fastq.gz, SRR11281676, SRR1… SRA
SRX7887820 SRP252209 RNA-Seq SINGLE
GSM4404856: J82_IGF2BP2_C; Homo sapiens; RNA-Seq
Sample: SRS6297348
BioProject: PRJNA611768
BioSample: SAMN14345367
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: J82
sirna: IGF2BP2
triplicate: C
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281677 3595940 273291440 106.15 IGF2BP2_N205-177_N205-177_S12_L001_R1_001.fastq.gz, SRR11281677, SRR1… SRA
SRR11281678 3510259 266779684 104.35 IGF2BP2_N205-177_N205-177_S12_L002_R1_001.fastq.gz, SRR11281678, SRR1… SRA
SRR11281679 3623526 275387976 107.12 IGF2BP2_N205-177_N205-177_S12_L003_R1_001.fastq.gz, SRR11281679, SRR1… SRA
SRR11281680 3542858 269257208 105.21 IGF2BP2_N205-177_N205-177_S12_L004_R1_001.fastq.gz, SRR11281680, SRR1… SRA
SRX7887821 SRP252209 RNA-Seq SINGLE
GSM4404857: J82_scr_A; Homo sapiens; RNA-Seq
Sample: SRS6297349
BioProject: PRJNA611768
BioSample: SAMN14345366
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: J82
sirna: scr
triplicate: A
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281681 3012834 228975384 88.75 scramble_N205-172_N205-172_S7_L001_R1_001.fastq.gz, SRR11281681, SRR1… SRA
SRR11281682 2938573 223331548 87.08 scramble_N205-172_N205-172_S7_L002_R1_001.fastq.gz, SRR11281682, SRR1… SRA
SRR11281683 3037130 230821880 89.55 scramble_N205-172_N205-172_S7_L003_R1_001.fastq.gz, SRR11281683, SRR1… SRA
SRR11281684 2967807 225553332 87.87 scramble_N205-172_N205-172_S7_L004_R1_001.fastq.gz, SRR11281684, SRR1… SRA
SRX7887822 SRP252209 RNA-Seq SINGLE
GSM4404858: J82_scr_B; Homo sapiens; RNA-Seq
Sample: SRS6297350
BioProject: PRJNA611768
BioSample: SAMN14345365
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: J82
sirna: scr
triplicate: B
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281685 3229905 245472780 94.96 scramble_N205-173_N205-173_S8_L001_R1_001.fastq.gz, SRR11281685, SRR1… SRA
SRR11281686 3153441 239661516 93.29 scramble_N205-173_N205-173_S8_L002_R1_001.fastq.gz, SRR11281686, SRR1… SRA
SRR11281687 3252720 247206720 95.69 scramble_N205-173_N205-173_S8_L003_R1_001.fastq.gz, SRR11281687, SRR1… SRA
SRR11281688 3186563 242178788 94.14 scramble_N205-173_N205-173_S8_L004_R1_001.fastq.gz, SRR11281688, SRR1… SRA
SRX7887823 SRP252209 RNA-Seq SINGLE
GSM4404859: J82_scr_C; Homo sapiens; RNA-Seq
Sample: SRS6297351
BioProject: PRJNA611768
BioSample: SAMN14345364
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: cell line
tissue: Bladder carcinoma
cell line: J82
sirna: scr
triplicate: C
Original files (1)
cell line
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR11281689 5472974 415946024 161.56 scramble_N205-174_N205-174_S9_L001_R1_001.fastq.gz, SRR11281689, SRR1… SRA
SRR11281690 5336280 405557280 158.51 scramble_N205-174_N205-174_S9_L002_R1_001.fastq.gz, SRR11281690, SRR1… SRA
SRR11281691 5510800 418820800 162.81 scramble_N205-174_N205-174_S9_L003_R1_001.fastq.gz, SRR11281691, SRR1… SRA
SRR11281692 5390379 409668804 159.96 scramble_N205-174_N205-174_S9_L004_R1_001.fastq.gz, SRR11281692, SRR1… SRA

Linked Publications (1)

Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression.
Genome medicine · 2020

Data Files (146)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— Cdyl_N205-178_N205-178_S13_L001_R1_001.fastq.gz RNA-Seq 98.2 MB link
— Cdyl_N205-178_N205-178_S13_L002_R1_001.fastq.gz RNA-Seq 96.3 MB link
— Cdyl_N205-178_N205-178_S13_L003_R1_001.fastq.gz RNA-Seq 99.0 MB link
— Cdyl_N205-178_N205-178_S13_L004_R1_001.fastq.gz RNA-Seq 97.3 MB link
— Cdyl_N205-179_N205-179_S14_L001_R1_001.fastq.gz RNA-Seq 92.4 MB link
— Cdyl_N205-179_N205-179_S14_L002_R1_001.fastq.gz RNA-Seq 90.8 MB link
— Cdyl_N205-179_N205-179_S14_L003_R1_001.fastq.gz RNA-Seq 93.2 MB link
— Cdyl_N205-179_N205-179_S14_L004_R1_001.fastq.gz RNA-Seq 91.7 MB link
— Cdyl_N205-180_N205-180_S15_L001_R1_001.fastq.gz RNA-Seq 100.3 MB link
— Cdyl_N205-180_N205-180_S15_L002_R1_001.fastq.gz RNA-Seq 98.3 MB link
— Cdyl_N205-180_N205-180_S15_L003_R1_001.fastq.gz RNA-Seq 101.6 MB link
— Cdyl_N205-180_N205-180_S15_L004_R1_001.fastq.gz RNA-Seq 99.2 MB link
— Cdyl_N205-181_N205-181_S16_L001_R1_001.fastq.gz RNA-Seq 124.3 MB link
— Cdyl_N205-181_N205-181_S16_L002_R1_001.fastq.gz RNA-Seq 122.1 MB link
— Cdyl_N205-181_N205-181_S16_L003_R1_001.fastq.gz RNA-Seq 125.6 MB link
— Cdyl_N205-181_N205-181_S16_L004_R1_001.fastq.gz RNA-Seq 123.0 MB link
— Cdyl_N205-182_N205-182_S17_L001_R1_001.fastq.gz RNA-Seq 95.2 MB link
— Cdyl_N205-182_N205-182_S17_L002_R1_001.fastq.gz RNA-Seq 93.7 MB link
— Cdyl_N205-182_N205-182_S17_L003_R1_001.fastq.gz RNA-Seq 96.6 MB link
— Cdyl_N205-182_N205-182_S17_L004_R1_001.fastq.gz RNA-Seq 94.6 MB link
— Cdyl_N205-183_N205-183_S18_L001_R1_001.fastq.gz RNA-Seq 92.4 MB link
— Cdyl_N205-183_N205-183_S18_L002_R1_001.fastq.gz RNA-Seq 90.6 MB link
— Cdyl_N205-183_N205-183_S18_L003_R1_001.fastq.gz RNA-Seq 93.4 MB link
— Cdyl_N205-183_N205-183_S18_L004_R1_001.fastq.gz RNA-Seq 91.5 MB link
— Cdyl_N205-200_N205-200_S35_L001_R1_001.fastq.gz RNA-Seq 94.5 MB link
— Cdyl_N205-200_N205-200_S35_L002_R1_001.fastq.gz RNA-Seq 92.7 MB link
— Cdyl_N205-200_N205-200_S35_L003_R1_001.fastq.gz RNA-Seq 95.6 MB link
— Cdyl_N205-200_N205-200_S35_L004_R1_001.fastq.gz RNA-Seq 93.5 MB link
— Cdyl_N205-201_N205-201_S36_L001_R1_001.fastq.gz RNA-Seq 98.0 MB link
— Cdyl_N205-201_N205-201_S36_L002_R1_001.fastq.gz RNA-Seq 96.4 MB link
— Cdyl_N205-201_N205-201_S36_L003_R1_001.fastq.gz RNA-Seq 99.6 MB link
— Cdyl_N205-201_N205-201_S36_L004_R1_001.fastq.gz RNA-Seq 97.5 MB link
— Cdyl_N205-202_N205-202_S37_L001_R1_001.fastq.gz RNA-Seq 132.6 MB link
— Cdyl_N205-202_N205-202_S37_L002_R1_001.fastq.gz RNA-Seq 130.0 MB link
— Cdyl_N205-202_N205-202_S37_L003_R1_001.fastq.gz RNA-Seq 134.8 MB link
— Cdyl_N205-202_N205-202_S37_L004_R1_001.fastq.gz RNA-Seq 131.5 MB link
— GRWD1_N205-169_N205-169_S4_L001_R1_001.fastq.gz RNA-Seq 86.3 MB link
— GRWD1_N205-169_N205-169_S4_L002_R1_001.fastq.gz RNA-Seq 84.8 MB link
— GRWD1_N205-169_N205-169_S4_L003_R1_001.fastq.gz RNA-Seq 87.2 MB link
— GRWD1_N205-169_N205-169_S4_L004_R1_001.fastq.gz RNA-Seq 85.6 MB link
— GRWD1_N205-170_N205-170_S5_L001_R1_001.fastq.gz RNA-Seq 101.5 MB link
— GRWD1_N205-170_N205-170_S5_L002_R1_001.fastq.gz RNA-Seq 100.2 MB link
— GRWD1_N205-170_N205-170_S5_L003_R1_001.fastq.gz RNA-Seq 102.7 MB link
— GRWD1_N205-170_N205-170_S5_L004_R1_001.fastq.gz RNA-Seq 100.8 MB link
— GRWD1_N205-171_N205-171_S6_L001_R1_001.fastq.gz RNA-Seq 79.8 MB link
— GRWD1_N205-171_N205-171_S6_L002_R1_001.fastq.gz RNA-Seq 77.6 MB link
— GRWD1_N205-171_N205-171_S6_L003_R1_001.fastq.gz RNA-Seq 80.2 MB link
— GRWD1_N205-171_N205-171_S6_L004_R1_001.fastq.gz RNA-Seq 77.7 MB link
— GRWD1_N205-191_N205-191_S26_L001_R1_001.fastq.gz RNA-Seq 100.8 MB link
— GRWD1_N205-191_N205-191_S26_L002_R1_001.fastq.gz RNA-Seq 99.1 MB link
— GRWD1_N205-191_N205-191_S26_L003_R1_001.fastq.gz RNA-Seq 102.2 MB link
— GRWD1_N205-191_N205-191_S26_L004_R1_001.fastq.gz RNA-Seq 100.0 MB link
— GRWD1_N205-192_N205-192_S27_L001_R1_001.fastq.gz RNA-Seq 114.6 MB link
— GRWD1_N205-192_N205-192_S27_L002_R1_001.fastq.gz RNA-Seq 113.1 MB link
— GRWD1_N205-192_N205-192_S27_L003_R1_001.fastq.gz RNA-Seq 116.2 MB link
— GRWD1_N205-192_N205-192_S27_L004_R1_001.fastq.gz RNA-Seq 114.1 MB link
— GRWD1_N205-193_N205-193_S28_L001_R1_001.fastq.gz RNA-Seq 99.1 MB link
— GRWD1_N205-193_N205-193_S28_L002_R1_001.fastq.gz RNA-Seq 97.2 MB link
— GRWD1_N205-193_N205-193_S28_L003_R1_001.fastq.gz RNA-Seq 100.1 MB link
— GRWD1_N205-193_N205-193_S28_L004_R1_001.fastq.gz RNA-Seq 98.3 MB link
— IGF2BP1_N205-166_N205-166_S1_L001_R1_001.fastq.gz RNA-Seq 171.5 MB link
— IGF2BP1_N205-166_N205-166_S1_L002_R1_001.fastq.gz RNA-Seq 168.5 MB link
— IGF2BP1_N205-166_N205-166_S1_L003_R1_001.fastq.gz RNA-Seq 173.1 MB link
— IGF2BP1_N205-166_N205-166_S1_L004_R1_001.fastq.gz RNA-Seq 170.2 MB link
— IGF2BP1_N205-167_N205-167_S2_L001_R1_001.fastq.gz RNA-Seq 107.3 MB link
— IGF2BP1_N205-167_N205-167_S2_L002_R1_001.fastq.gz RNA-Seq 105.4 MB link
— IGF2BP1_N205-167_N205-167_S2_L003_R1_001.fastq.gz RNA-Seq 108.4 MB link
— IGF2BP1_N205-167_N205-167_S2_L004_R1_001.fastq.gz RNA-Seq 106.5 MB link
— IGF2BP1_N205-168_N205-168_S3_L001_R1_001.fastq.gz RNA-Seq 88.6 MB link
— IGF2BP1_N205-168_N205-168_S3_L002_R1_001.fastq.gz RNA-Seq 87.1 MB link
— IGF2BP1_N205-168_N205-168_S3_L003_R1_001.fastq.gz RNA-Seq 89.3 MB link
— IGF2BP1_N205-168_N205-168_S3_L004_R1_001.fastq.gz RNA-Seq 87.9 MB link
— IGF2BP1_N205-188_N205-188_S23_L001_R1_001.fastq.gz RNA-Seq 113.4 MB link
— IGF2BP1_N205-188_N205-188_S23_L002_R1_001.fastq.gz RNA-Seq 111.6 MB link
— IGF2BP1_N205-188_N205-188_S23_L003_R1_001.fastq.gz RNA-Seq 114.8 MB link
— IGF2BP1_N205-188_N205-188_S23_L004_R1_001.fastq.gz RNA-Seq 112.6 MB link
— IGF2BP1_N205-189_N205-189_S24_L001_R1_001.fastq.gz RNA-Seq 116.3 MB link
— IGF2BP1_N205-189_N205-189_S24_L002_R1_001.fastq.gz RNA-Seq 114.5 MB link
— IGF2BP1_N205-189_N205-189_S24_L003_R1_001.fastq.gz RNA-Seq 118.4 MB link
— IGF2BP1_N205-189_N205-189_S24_L004_R1_001.fastq.gz RNA-Seq 115.8 MB link
— IGF2BP1_N205-190_N205-190_S25_L001_R1_001.fastq.gz RNA-Seq 83.2 MB link
— IGF2BP1_N205-190_N205-190_S25_L002_R1_001.fastq.gz RNA-Seq 81.8 MB link
— IGF2BP1_N205-190_N205-190_S25_L003_R1_001.fastq.gz RNA-Seq 84.0 MB link
— IGF2BP1_N205-190_N205-190_S25_L004_R1_001.fastq.gz RNA-Seq 82.5 MB link
— IGF2BP2_N205-175_N205-175_S10_L001_R1_001.fastq.gz RNA-Seq 86.1 MB link
— IGF2BP2_N205-175_N205-175_S10_L002_R1_001.fastq.gz RNA-Seq 84.5 MB link
— IGF2BP2_N205-175_N205-175_S10_L003_R1_001.fastq.gz RNA-Seq 87.0 MB link
— IGF2BP2_N205-175_N205-175_S10_L004_R1_001.fastq.gz RNA-Seq 85.2 MB link
— IGF2BP2_N205-176_N205-176_S11_L001_R1_001.fastq.gz RNA-Seq 102.4 MB link
— IGF2BP2_N205-176_N205-176_S11_L002_R1_001.fastq.gz RNA-Seq 100.7 MB link
— IGF2BP2_N205-176_N205-176_S11_L003_R1_001.fastq.gz RNA-Seq 103.4 MB link
— IGF2BP2_N205-176_N205-176_S11_L004_R1_001.fastq.gz RNA-Seq 101.6 MB link
— IGF2BP2_N205-177_N205-177_S12_L001_R1_001.fastq.gz RNA-Seq 106.1 MB link
— IGF2BP2_N205-177_N205-177_S12_L002_R1_001.fastq.gz RNA-Seq 104.3 MB link
— IGF2BP2_N205-177_N205-177_S12_L003_R1_001.fastq.gz RNA-Seq 107.1 MB link
— IGF2BP2_N205-177_N205-177_S12_L004_R1_001.fastq.gz RNA-Seq 105.2 MB link
— IGF2BP2_N205-197_N205-197_S32_L001_R1_001.fastq.gz RNA-Seq 101.2 MB link
— IGF2BP2_N205-197_N205-197_S32_L002_R1_001.fastq.gz RNA-Seq 99.5 MB link
— IGF2BP2_N205-197_N205-197_S32_L003_R1_001.fastq.gz RNA-Seq 102.5 MB link
— IGF2BP2_N205-197_N205-197_S32_L004_R1_001.fastq.gz RNA-Seq 100.4 MB link
— IGF2BP2_N205-198_N205-198_S33_L001_R1_001.fastq.gz RNA-Seq 95.9 MB link
— IGF2BP2_N205-198_N205-198_S33_L002_R1_001.fastq.gz RNA-Seq 93.9 MB link
— IGF2BP2_N205-198_N205-198_S33_L003_R1_001.fastq.gz RNA-Seq 96.5 MB link
— IGF2BP2_N205-198_N205-198_S33_L004_R1_001.fastq.gz RNA-Seq 94.7 MB link
— IGF2BP2_N205-199_N205-199_S34_L001_R1_001.fastq.gz RNA-Seq 93.4 MB link
— IGF2BP2_N205-199_N205-199_S34_L002_R1_001.fastq.gz RNA-Seq 91.5 MB link
— IGF2BP2_N205-199_N205-199_S34_L003_R1_001.fastq.gz RNA-Seq 94.5 MB link
— IGF2BP2_N205-199_N205-199_S34_L004_R1_001.fastq.gz RNA-Seq 92.5 MB link
— scramble_N205-172_N205-172_S7_L001_R1_001.fastq.gz RNA-Seq 88.8 MB link
— scramble_N205-172_N205-172_S7_L002_R1_001.fastq.gz RNA-Seq 87.1 MB link
— scramble_N205-172_N205-172_S7_L003_R1_001.fastq.gz RNA-Seq 89.5 MB link
— scramble_N205-172_N205-172_S7_L004_R1_001.fastq.gz RNA-Seq 87.9 MB link
— scramble_N205-173_N205-173_S8_L001_R1_001.fastq.gz RNA-Seq 95.0 MB link
— scramble_N205-173_N205-173_S8_L002_R1_001.fastq.gz RNA-Seq 93.3 MB link
— scramble_N205-173_N205-173_S8_L003_R1_001.fastq.gz RNA-Seq 95.7 MB link
— scramble_N205-173_N205-173_S8_L004_R1_001.fastq.gz RNA-Seq 94.1 MB link
— scramble_N205-174_N205-174_S9_L001_R1_001.fastq.gz RNA-Seq 161.6 MB link
— scramble_N205-174_N205-174_S9_L002_R1_001.fastq.gz RNA-Seq 158.5 MB link
— scramble_N205-174_N205-174_S9_L003_R1_001.fastq.gz RNA-Seq 162.8 MB link
— scramble_N205-174_N205-174_S9_L004_R1_001.fastq.gz RNA-Seq 160.0 MB link
— scramble_N205-184_N205-184_S19_L001_R1_001.fastq.gz RNA-Seq 91.7 MB link
— scramble_N205-184_N205-184_S19_L002_R1_001.fastq.gz RNA-Seq 90.0 MB link
— scramble_N205-184_N205-184_S19_L003_R1_001.fastq.gz RNA-Seq 92.6 MB link
— scramble_N205-184_N205-184_S19_L004_R1_001.fastq.gz RNA-Seq 90.8 MB link
— scramble_N205-185_N205-185_S20_L001_R1_001.fastq.gz RNA-Seq 88.4 MB link
— scramble_N205-185_N205-185_S20_L002_R1_001.fastq.gz RNA-Seq 86.9 MB link
— scramble_N205-185_N205-185_S20_L003_R1_001.fastq.gz RNA-Seq 89.3 MB link
— scramble_N205-185_N205-185_S20_L004_R1_001.fastq.gz RNA-Seq 87.7 MB link
— scramble_N205-186_N205-186_S21_L001_R1_001.fastq.gz RNA-Seq 97.6 MB link
— scramble_N205-186_N205-186_S21_L002_R1_001.fastq.gz RNA-Seq 95.8 MB link
— scramble_N205-186_N205-186_S21_L003_R1_001.fastq.gz RNA-Seq 98.9 MB link
— scramble_N205-186_N205-186_S21_L004_R1_001.fastq.gz RNA-Seq 96.9 MB link
— scramble_N205-194_N205-194_S29_L001_R1_001.fastq.gz RNA-Seq 85.1 MB link
— scramble_N205-194_N205-194_S29_L002_R1_001.fastq.gz RNA-Seq 83.5 MB link
— scramble_N205-194_N205-194_S29_L003_R1_001.fastq.gz RNA-Seq 85.9 MB link
— scramble_N205-194_N205-194_S29_L004_R1_001.fastq.gz RNA-Seq 84.3 MB link
— scramble_N205-195_N205-195_S30_L001_R1_001.fastq.gz RNA-Seq 101.9 MB link
— scramble_N205-195_N205-195_S30_L002_R1_001.fastq.gz RNA-Seq 100.5 MB link
— scramble_N205-195_N205-195_S30_L003_R1_001.fastq.gz RNA-Seq 103.4 MB link
— scramble_N205-195_N205-195_S30_L004_R1_001.fastq.gz RNA-Seq 101.6 MB link
— scramble_N205-196_N205-196_S31_L001_R1_001.fastq.gz RNA-Seq 111.1 MB link
— scramble_N205-196_N205-196_S31_L002_R1_001.fastq.gz RNA-Seq 109.2 MB link
— scramble_N205-196_N205-196_S31_L003_R1_001.fastq.gz RNA-Seq 112.5 MB link
— scramble_N205-196_N205-196_S31_L004_R1_001.fastq.gz RNA-Seq 110.3 MB link
— SRR11281645.lite RNA-Seq 86.3 MB link
— SRR11281653.lite RNA-Seq 79.8 MB link