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GSE139815

GSE GEO
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Pooled CRISPR screens with imaging on microRaft arrays reveals stress granule-regulatory factors

Organism: Homo sapiens
Platform: GPL20301
Samples: 107
Experiment Types:
Other
Submitted: Nov 01 2019
Last Updated: Dec 29 2021
Status: Public on Nov 02 2019
Contact: Gene,,Yeo (UCSD)

Relations

BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA587094 SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP227931

Summary

Here, we introduce CRaft-ID (CRISPR-based microRaft followed by gRNA identification) to enable the screening of image-based phenotypes such as subcellular protein localization from a pool of lenti-CRISPR bulk infected cells. Clonal colonies selected from microRaft arrays are isolated after phenotyping for a targeted-sequencing library preparation to identify the infected sgRNA in each colony. sgRNA representation in the pool of cells is measured with a targeted-sequencing library preparation from the bulk sample.

Overall Design

Targeted-sequencing of sgRNA insert in the genome from a bulk sample of cells or individual microRaft cell colonies.

Analysis (2 steps)

View Data Processing
Processing steps for GSE139815
  1. MaGeCk was used to process data for lentiCRISPR bulk samples to quantify sgRNA abundances.
  2. Targeted microRaft data was processed with CRaftID software (https://github.com/YeoLab/CRaftID)

Supplementary Files (2)

GSE139815_all.count_normalized.csv.gz Download
GSE139815_microRaft_processed.csv.gz Download
GEO Samples (107)
GSM4146769 GSM4146770 GSM4146771 GSM4146772 GSM4146773 GSM4146774 GSM4146775 GSM4146776 GSM4146777 GSM4146778 GSM4146779 GSM4146780 GSM4146781 GSM4146782 GSM4146783 GSM4146784 GSM4146785 GSM4146786 GSM4146787 GSM4146788 GSM4146789 GSM4146790 GSM4146791 GSM4146792 GSM4146793 GSM4146794 GSM4146795 GSM4146796 GSM4146797 GSM4146798 GSM4146799 GSM4146800 GSM4146801 GSM4146802 GSM4146803 GSM4146804 GSM4146805 GSM4146806 GSM4146807 GSM4146808 GSM4146809 GSM4146810 GSM4146811 GSM4146812 GSM4146813 GSM4146814 GSM4146815 GSM4146816 GSM4146817 GSM4146818 GSM4146819 GSM4146820 GSM4146821 GSM4146822 GSM4146823 GSM4146824 GSM4146825 GSM4146826 GSM4146827 GSM4146828 GSM4146829 GSM4146830 GSM4146831 GSM4146832 GSM4146833 GSM4146834 GSM4146835 GSM4146836 GSM4146837 GSM4146838 GSM4146839 GSM4146840 GSM4146841 GSM4146842 GSM4146843 GSM4146844 GSM4146845 GSM4146846 GSM4146847 GSM4146848 GSM4146849 GSM4146850 GSM4146851 GSM4146852 GSM4146853 GSM4146854 GSM4146855 GSM4146856 GSM4146857 GSM4146858 GSM4146859 GSM4146860 GSM4146861 GSM4146862 GSM4146863 GSM4146864 GSM4146865 GSM4146866 GSM4146867 GSM4146868 GSM4146869 GSM4146870 GSM4146871 GSM4146872 GSM4146873 GSM4146874 GSM4146875

Dataset Citations (1)

Pooled CRISPR screens with imaging on microraft arrays reveals stress granule-regulatory factors.
PMID 32393832 · 2020 · Nature methods
Emily C Wheeler, Anthony Q Vu, Jaclyn M Einstein, Matthew DiSalvo, Noorsher Ahmed, Eric L Van Nostrand, Alexander A Shishkin, Wenhao Jin, Nancy L Allbritton, Gene W Yeo

SRA Experiments (107) and Runs (107)

Total: 728 MB
SRX7084888 SRP227931 OTHER SINGLE
GSM4146769: Day0_technical_rep1; Homo sapiens; OTHER
Sample: SRS5599278
BioProject: PRJNA587094
BioSample: SAMN13176073
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: RBP-lentiCRISPR infected HEK293T
time point: Day0
treatment: None
isolation: lentiCRISPR bulk
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384085 1743074 130730550 50.03 EWG17_S14_L003_R1_001.fastq.gz, SRR10384085, SRR10384085.sralite SRA
SRX7084889 SRP227931 OTHER SINGLE
GSM4146770: Day0_technical_rep2; Homo sapiens; OTHER
Sample: SRS5599279
BioProject: PRJNA587094
BioSample: SAMN13176138
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: RBP-lentiCRISPR infected HEK293T
time point: Day0
treatment: None
isolation: lentiCRISPR bulk
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384086 2145764 160932300 60.63 EWG18_S15_L003_R1_001.fastq.gz, SRR10384086, SRR10384086.sralite SRA
SRX7084890 SRP227931 OTHER SINGLE
GSM4146803: MAX_181019_raft7_A01_G001_0188-13; Homo sapiens; OTHER
Sample: SRS5599280
BioProject: PRJNA587094
BioSample: SAMN13176105
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384119 25259 1742871 0.56 SG29_133.fastq, SRR10384119, SRR10384119.sralite SRA
SRX7084891 SRP227931 OTHER SINGLE
GSM4146804: MAX_181019_raft2_A01_G001_0145-84; Homo sapiens; OTHER
Sample: SRS5599281
BioProject: PRJNA587094
BioSample: SAMN13176104
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384120 351934 37416919 12.51 SG36_144.fastq, SRR10384120, SRR10384120.sralite SRA
SRX7084892 SRP227931 OTHER SINGLE
GSM4146805: MAX_181019_raft4_A01_G001_0163-37; Homo sapiens; OTHER
Sample: SRS5599282
BioProject: PRJNA587094
BioSample: SAMN13176103
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384121 17250 1190250 0.36 SG4_142.fastq, SRR10384121, SRR10384121.sralite SRA
SRX7084893 SRP227931 OTHER SINGLE
GSM4146806: MAX_181019_raft5_A01_G001_0157-9; Homo sapiens; OTHER
Sample: SRS5599283
BioProject: PRJNA587094
BioSample: SAMN13176102
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384122 61110 4216590 1.46 SG25_132.fastq, SRR10384122, SRR10384122.sralite SRA
SRX7084894 SRP227931 OTHER SINGLE
GSM4146807: MAX_181019_raft4_A01_G001_0114-94; Homo sapiens; OTHER
Sample: SRS5599284
BioProject: PRJNA587094
BioSample: SAMN13176101
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384123 37076 2558244 0.96 SG3_131.fastq, SRR10384123, SRR10384123.sralite SRA
SRX7084895 SRP227931 OTHER SINGLE
GSM4146808: MAX_181019_raft1_A01_G001_0183-17; Homo sapiens; OTHER
Sample: SRS5599285
BioProject: PRJNA587094
BioSample: SAMN13176100
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384124 161740 17072670 6.68 SG33_132.fastq, SRR10384124, SRR10384124.sralite SRA
SRX7084896 SRP227931 OTHER SINGLE
GSM4146809: MAX_181019_raft2_A01_G001_0150-54; Homo sapiens; OTHER
Sample: SRS5599286
BioProject: PRJNA587094
BioSample: SAMN13176099
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384125 76603 8120995 3.2 SG33_145.fastq, SRR10384125, SRR10384125.sralite SRA
SRX7084897 SRP227931 OTHER SINGLE
GSM4146810: MAX_181019_raft13_A01_G001_0093-13; Homo sapiens; OTHER
Sample: SRS5599287
BioProject: PRJNA587094
BioSample: SAMN13176098
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384126 120381 8306289 2.22 SG32_144.fastq, SRR10384126, SRR10384126.sralite SRA
SRX7084898 SRP227931 OTHER SINGLE
GSM4146811: MAX_181019_raft17_A01_G001_0227-78; Homo sapiens; OTHER
Sample: SRS5599288
BioProject: PRJNA587094
BioSample: SAMN13176097
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384127 89431 6170739 1.97 SG17_132.fastq, SRR10384127, SRR10384127.sralite SRA
SRX7084899 SRP227931 OTHER SINGLE
GSM4146812: MAX_181019_raft6_A01_G001_0125-47; Homo sapiens; OTHER
Sample: SRS5599289
BioProject: PRJNA587094
BioSample: SAMN13176096
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384128 26048 1797312 0.58 SG9_131.fastq, SRR10384128, SRR10384128.sralite SRA
SRX7084900 SRP227931 OTHER SINGLE
GSM4146813: MAX_181019_raft5_A01_G001_0194-58; Homo sapiens; OTHER
Sample: SRS5599290
BioProject: PRJNA587094
BioSample: SAMN13176095
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384129 77129 5321901 1.55 SG26_142.fastq, SRR10384129, SRR10384129.sralite SRA
SRX7084901 SRP227931 OTHER SINGLE
GSM4146814: MAX_181019_raft17_A01_G001_0236-36; Homo sapiens; OTHER
Sample: SRS5599291
BioProject: PRJNA587094
BioSample: SAMN13176094
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384130 179355 18834851 6.55 SG35_133.fastq, SRR10384130, SRR10384130.sralite SRA
SRX7084902 SRP227931 OTHER SINGLE
GSM4146815: MAX_181019_raft19_A01_G001_0012-16; Homo sapiens; OTHER
Sample: SRS5599292
BioProject: PRJNA587094
BioSample: SAMN13176093
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384131 11673 805437 0.33 SG23_133.fastq, SRR10384131, SRR10384131.sralite SRA
SRX7084903 SRP227931 OTHER SINGLE
GSM4146816: MAX_181019_raft13_A01_G001_0135-29; Homo sapiens; OTHER
Sample: SRS5599293
BioProject: PRJNA587094
BioSample: SAMN13176092
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384132 272352 28840214 7.63 SG37_145.fastq, SRR10384132, SRR10384132.sralite SRA
SRX7084904 SRP227931 OTHER SINGLE
GSM4146817: MAX_181019_raft9_A01_G001_0297-68; Homo sapiens; OTHER
Sample: SRS5599294
BioProject: PRJNA587094
BioSample: SAMN13176091
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384133 237876 25077827 6.47 SG36_142.fastq, SRR10384133, SRR10384133.sralite SRA
SRX7084905 SRP227931 OTHER SINGLE
GSM4146818: MAX_181019_raft7_A01_G001_0319-36; Homo sapiens; OTHER
Sample: SRS5599295
BioProject: PRJNA587094
BioSample: SAMN13176090
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384134 14102 973038 0.35 SG30_144.fastq, SRR10384134, SRR10384134.sralite SRA
SRX7084906 SRP227931 OTHER SINGLE
GSM4146819: MAX_181019_raft7_A01_G001_0169-63; Homo sapiens; OTHER
Sample: SRS5599296
BioProject: PRJNA587094
BioSample: SAMN13176089
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384135 245353 22228891 10.47 SG36_132.fastq, SRR10384135, SRR10384135.sralite SRA
SRX7084907 SRP227931 OTHER SINGLE
GSM4146820: MAX_181019_raft5_A01_G001_0210-72; Homo sapiens; OTHER
Sample: SRS5599297
BioProject: PRJNA587094
BioSample: SAMN13176088
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384136 55346 3818874 1.08 SG26_143.fastq, SRR10384136, SRR10384136.sralite SRA
SRX7084908 SRP227931 OTHER SINGLE
GSM4146821: MAX_181019_raft10_A01_G001_0084-38; Homo sapiens; OTHER
Sample: SRS5599298
BioProject: PRJNA587094
BioSample: SAMN13176087
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384137 26555 1832295 0.69 SG12_145.fastq, SRR10384137, SRR10384137.sralite SRA
SRX7084909 SRP227931 OTHER SINGLE
GSM4146822: MAX_181019_raft2_A01_G001_0194-59; Homo sapiens; OTHER
Sample: SRS5599299
BioProject: PRJNA587094
BioSample: SAMN13176086
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384138 21854 1507926 0.57 SG7_132.fastq, SRR10384138, SRR10384138.sralite SRA
SRX7084910 SRP227931 OTHER SINGLE
GSM4146823: MAX_181019_raft2_A01_G001_0333-21; Homo sapiens; OTHER
Sample: SRS5599300
BioProject: PRJNA587094
BioSample: SAMN13176085
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384139 30266 2088354 0.7 SG8_145.fastq, SRR10384139, SRR10384139.sralite SRA
SRX7084911 SRP227931 OTHER SINGLE
GSM4146824: MAX_181019_raft7_A01_G001_0191-69; Homo sapiens; OTHER
Sample: SRS5599301
BioProject: PRJNA587094
BioSample: SAMN13176084
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384140 113475 7829775 2.27 SG30_142.fastq, SRR10384140, SRR10384140.sralite SRA
SRX7084912 SRP227931 OTHER SINGLE
GSM4146825: MAX_181019_raft15_A01_G001_0314-17; Homo sapiens; OTHER
Sample: SRS5599302
BioProject: PRJNA587094
BioSample: SAMN13176083
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384141 60772 4193268 1.4 SG15_132.fastq, SRR10384141, SRR10384141.sralite SRA
SRX7084913 SRP227931 OTHER SINGLE
GSM4146826: MAX_181019_raft11_A01_G001_0075-52; Homo sapiens; OTHER
Sample: SRS5599303
BioProject: PRJNA587094
BioSample: SAMN13176082
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384142 352394 36683637 10.19 SG37_143.fastq, SRR10384142, SRR10384142.sralite SRA
SRX7084914 SRP227931 OTHER SINGLE
GSM4146827: MAX_181019_raft2_A01_G001_0227-57; Homo sapiens; OTHER
Sample: SRS5599304
BioProject: PRJNA587094
BioSample: SAMN13176081
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384143 19960 1377240 0.37 SG7_133.fastq, SRR10384143, SRR10384143.sralite SRA
SRX7084915 SRP227931 OTHER SINGLE
GSM4146828: MAX_181019_raft4_A01_G001_0280-29; Homo sapiens; OTHER
Sample: SRS5599305
BioProject: PRJNA587094
BioSample: SAMN13176080
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384144 7851 541719 0.23 SG4_144.fastq, SRR10384144, SRR10384144.sralite SRA
SRX7084916 SRP227931 OTHER SINGLE
GSM4146829: MAX_181019_raft17_A01_G001_0282-75; Homo sapiens; OTHER
Sample: SRS5599306
BioProject: PRJNA587094
BioSample: SAMN13176079
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384145 111044 9956911 4.29 SG38_143.fastq, SRR10384145, SRR10384145.sralite SRA
SRX7084917 SRP227931 OTHER SINGLE
GSM4146830: MAX_181019_raft17_A01_G001_0180-59; Homo sapiens; OTHER
Sample: SRS5599307
BioProject: PRJNA587094
BioSample: SAMN13176078
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384146 22109 1525521 0.52 SG17_130.fastq, SRR10384146, SRR10384146.sralite SRA
SRX7084918 SRP227931 OTHER SINGLE
GSM4146831: MAX_181019_raft6_A01_G001_0227-16; Homo sapiens; OTHER
Sample: SRS5599308
BioProject: PRJNA587094
BioSample: SAMN13176077
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384147 55525 3831225 0.96 SG30_145.fastq, SRR10384147, SRR10384147.sralite SRA
SRX7084919 SRP227931 OTHER SINGLE
GSM4146832: MAX_181019_raft9_A01_G001_0055-29; Homo sapiens; OTHER
Sample: SRS5599309
BioProject: PRJNA587094
BioSample: SAMN13176076
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384148 135141 14282399 4.25 SG34_145.fastq, SRR10384148, SRR10384148.sralite SRA
SRX7084920 SRP227931 OTHER SINGLE
GSM4146833: MAX_181019_raft17_A01_G001_0054-83; Homo sapiens; OTHER
Sample: SRS5599310
BioProject: PRJNA587094
BioSample: SAMN13176075
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384149 27904 1925376 0.59 SG16_145.fastq, SRR10384149, SRR10384149.sralite SRA
SRX7084921 SRP227931 OTHER SINGLE
GSM4146834: MAX_181019_raft6_A01_G001_0200-51; Homo sapiens; OTHER
Sample: SRS5599311
BioProject: PRJNA587094
BioSample: SAMN13176074
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384150 5893 406617 0.16 SG10_144.fastq, SRR10384150, SRR10384150.sralite SRA
SRX7084922 SRP227931 OTHER SINGLE
GSM4146835: MAX_181019_raft5_A01_G001_0035-73; Homo sapiens; OTHER
Sample: SRS5599312
BioProject: PRJNA587094
BioSample: SAMN13176179
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384151 53729 3707301 1.01 SG25_130.fastq, SRR10384151, SRR10384151.sralite SRA
SRX7084923 SRP227931 OTHER SINGLE
GSM4146836: MAX_181019_raft1_A01_G001_0039-58; Homo sapiens; OTHER
Sample: SRS5599313
BioProject: PRJNA587094
BioSample: SAMN13176178
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384152 19047 1314243 0.47 SG20_142.fastq, SRR10384152, SRR10384152.sralite SRA
SRX7084924 SRP227931 OTHER SINGLE
GSM4146837: MAX_181019_raft1_A01_G001_0089-14; Homo sapiens; OTHER
Sample: SRS5599314
BioProject: PRJNA587094
BioSample: SAMN13176177
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384153 6240 432789 0.27 SG33_143.fastq, SRR10384153, SRR10384153.sralite SRA
SRX7084925 SRP227931 OTHER SINGLE
GSM4146838: MAX_181019_raft2_A01_G001_0080-7; Homo sapiens; OTHER
Sample: SRS5599315
BioProject: PRJNA587094
BioSample: SAMN13176176
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384154 3125 215625 0.15 SG6_142.fastq, SRR10384154, SRR10384154.sralite SRA
SRX7084926 SRP227931 OTHER SINGLE
GSM4146839: MAX_181019_raft6_A01_G001_0109-12; Homo sapiens; OTHER
Sample: SRS5599316
BioProject: PRJNA587094
BioSample: SAMN13176175
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384155 497 34293 0.09 SG9_130.fastq, SRR10384155, SRR10384155.sralite SRA
SRX7084927 SRP227931 OTHER SINGLE
GSM4146840: MAX_181019_raft6_A01_G001_0143-38; Homo sapiens; OTHER
Sample: SRS5599317
BioProject: PRJNA587094
BioSample: SAMN13176174
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384156 5554 621321 0.27 SG33_133.fastq, SRR10384156, SRR10384156.sralite SRA
SRX7084928 SRP227931 OTHER SINGLE
GSM4146841: MAX_181019_raft6_A01_G001_0152-50; Homo sapiens; OTHER
Sample: SRS5599318
BioProject: PRJNA587094
BioSample: SAMN13176173
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384157 7707 674757 0.34 SG34_142.fastq, SRR10384157, SRR10384157.sralite SRA
SRX7084929 SRP227931 OTHER SINGLE
GSM4146842: MAX_181019_raft6_A01_G001_0166-42; Homo sapiens; OTHER
Sample: SRS5599319
BioProject: PRJNA587094
BioSample: SAMN13176172
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384158 154031 15970455 4.71 SG34_143.fastq, SRR10384158, SRR10384158.sralite SRA
SRX7084930 SRP227931 OTHER SINGLE
GSM4146843: MAX_181019_raft6_A01_G001_0316-84; Homo sapiens; OTHER
Sample: SRS5599320
BioProject: PRJNA587094
BioSample: SAMN13176170
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384159 7 483 0.08 SG31_130.fastq, SRR10384159, SRR10384159.sralite SRA
SRX7084931 SRP227931 OTHER SINGLE
GSM4146844: MAX_181019_raft7_A01_G001_0097-5; Homo sapiens; OTHER
Sample: SRS5599321
BioProject: PRJNA587094
BioSample: SAMN13176169
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384160 2256 155664 0.13 SG29_130.fastq, SRR10384160, SRR10384160.sralite SRA
SRX7084932 SRP227931 OTHER SINGLE
GSM4146845: MAX_181019_raft7_A01_G001_0098-46; Homo sapiens; OTHER
Sample: SRS5599322
BioProject: PRJNA587094
BioSample: SAMN13176168
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384161 53463 5516340 1.68 SG34_131.fastq, SRR10384161, SRR10384161.sralite SRA
SRX7084933 SRP227931 OTHER SINGLE
GSM4146846: MAX_181019_raft7_A01_G001_0212-99; Homo sapiens; OTHER
Sample: SRS5599323
BioProject: PRJNA587094
BioSample: SAMN13176167
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384162 43273 2985837 0.95 SG30_143.fastq, SRR10384162, SRR10384162.sralite SRA
SRX7084934 SRP227931 OTHER SINGLE
GSM4146847: MAX_181019_raft8_A01_G001_0058-32; Homo sapiens; OTHER
Sample: SRS5599324
BioProject: PRJNA587094
BioSample: SAMN13176166
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384163 1823 129279 0.14 SG37_144.fastq, SRR10384163, SRR10384163.sralite SRA
SRX7084935 SRP227931 OTHER SINGLE
GSM4146848: MAX_181019_raft8_A01_G001_0128-57; Homo sapiens; OTHER
Sample: SRS5599325
BioProject: PRJNA587094
BioSample: SAMN13176165
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384164 226884 15654996 4.99 SG28_145.fastq, SRR10384164, SRR10384164.sralite SRA
SRX7084936 SRP227931 OTHER SINGLE
GSM4146849: MAX_181019_raft8_A01_G001_0196-14; Homo sapiens; OTHER
Sample: SRS5599326
BioProject: PRJNA587094
BioSample: SAMN13176164
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384165 5246 361974 0.18 SG31_133.fastq, SRR10384165, SRR10384165.sralite SRA
SRX7084937 SRP227931 OTHER SINGLE
GSM4146850: MAX_181019_raft8_A01_G001_0305-29; Homo sapiens; OTHER
Sample: SRS5599327
BioProject: PRJNA587094
BioSample: SAMN13176171
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384166 15625 1078125 0.41 SG32_142.fastq, SRR10384166, SRR10384166.sralite SRA
SRX7084938 SRP227931 OTHER SINGLE
GSM4146851: MAX_181019_raft9_A01_G001_0059-26; Homo sapiens; OTHER
Sample: SRS5599328
BioProject: PRJNA587094
BioSample: SAMN13176163
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384167 694 47886 0.09 SG11_130.fastq, SRR10384167, SRR10384167.sralite SRA
SRX7084939 SRP227931 OTHER SINGLE
GSM4146852: MAX_181019_raft9_A01_G001_0202-42; Homo sapiens; OTHER
Sample: SRS5599329
BioProject: PRJNA587094
BioSample: SAMN13176162
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384168 760003 67771413 35.96 SG38_132.fastq, SRR10384168, SRR10384168.sralite SRA
SRX7084940 SRP227931 OTHER SINGLE
GSM4146853: MAX_181019_raft9_A01_G001_0205-86; Homo sapiens; OTHER
Sample: SRS5599330
BioProject: PRJNA587094
BioSample: SAMN13176161
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384169 804 55476 0.1 SG11_133.fastq, SRR10384169, SRR10384169.sralite SRA
SRX7084941 SRP227931 OTHER SINGLE
GSM4146854: MAX_181019_raft9_A01_G001_0301-16; Homo sapiens; OTHER
Sample: SRS5599331
BioProject: PRJNA587094
BioSample: SAMN13176160
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384170 62176 5530580 2.64 SG36_143.fastq, SRR10384170, SRR10384170.sralite SRA
SRX7084942 SRP227931 OTHER SINGLE
GSM4146855: MAX_181019_raft11_A01_G001_0069-5; Homo sapiens; OTHER
Sample: SRS5599332
BioProject: PRJNA587094
BioSample: SAMN13176159
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384171 39710 4379042 1.63 SG34_133.fastq, SRR10384171, SRR10384171.sralite SRA
SRX7084943 SRP227931 OTHER SINGLE
GSM4146856: MAX_181019_raft11_A01_G001_0072-92; Homo sapiens; OTHER
Sample: SRS5599333
BioProject: PRJNA587094
BioSample: SAMN13176158
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384172 29 2001 0.08 SG14_142.fastq, SRR10384172, SRR10384172.sralite SRA
SRX7084944 SRP227931 OTHER SINGLE
GSM4146857: MAX_181019_raft12_A01_G001_0026-89; Homo sapiens; OTHER
Sample: SRS5599334
BioProject: PRJNA587094
BioSample: SAMN13176157
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384173 204120 21194602 7.41 SG35_145.fastq, SRR10384173, SRR10384173.sralite SRA
SRX7084945 SRP227931 OTHER SINGLE
GSM4146858: MAX_181019_raft12_A01_G001_0046-52; Homo sapiens; OTHER
Sample: SRS5599335
BioProject: PRJNA587094
BioSample: SAMN13176156
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384174 10152 700488 0.29 SG27_130.fastq, SRR10384174, SRR10384174.sralite SRA
SRX7084946 SRP227931 OTHER SINGLE
GSM4146859: MAX_181019_raft12_A01_G001_0202-27; Homo sapiens; OTHER
Sample: SRS5599336
BioProject: PRJNA587094
BioSample: SAMN13176155
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384175 35312 2436528 0.79 SG27_131.fastq, SRR10384175, SRR10384175.sralite SRA
SRX7084947 SRP227931 OTHER SINGLE
GSM4146860: MAX_181019_raft12_A01_G001_0249-12; Homo sapiens; OTHER
Sample: SRS5599337
BioProject: PRJNA587094
BioSample: SAMN13176154
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384176 142667 11297986 6.3 SG40_132.fastq, SRR10384176, SRR10384176.sralite SRA
SRX7084948 SRP227931 OTHER SINGLE
GSM4146861: MAX_181019_raft14_A01_G001_0226-64; Homo sapiens; OTHER
Sample: SRS5599338
BioProject: PRJNA587094
BioSample: SAMN13176153
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384177 1087426 85375155 48.04 SG41_132.fastq, SRR10384177, SRR10384177.sralite SRA
SRX7084949 SRP227931 OTHER SINGLE
GSM4146862: MAX_181019_raft15_A01_G001_0106-27; Homo sapiens; OTHER
Sample: SRS5599339
BioProject: PRJNA587094
BioSample: SAMN13176152
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384178 40389 2786841 1.02 SG22_142.fastq, SRR10384178, SRR10384178.sralite SRA
SRX7084950 SRP227931 OTHER SINGLE
GSM4146863: MAX_181019_raft15_A01_G001_0124-89; Homo sapiens; OTHER
Sample: SRS5599340
BioProject: PRJNA587094
BioSample: SAMN13176151
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384179 109801 7576269 2.5 SG22_143.fastq, SRR10384179, SRR10384179.sralite SRA
SRX7084951 SRP227931 OTHER SINGLE
GSM4146864: MAX_181019_raft15_A01_G001_0141-48; Homo sapiens; OTHER
Sample: SRS5599341
BioProject: PRJNA587094
BioSample: SAMN13176150
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384180 192430 18200806 5.41 SG34_144.fastq, SRR10384180, SRR10384180.sralite SRA
SRX7084952 SRP227931 OTHER SINGLE
GSM4146865: MAX_181019_raft15_A01_G001_0187-19; Homo sapiens; OTHER
Sample: SRS5599342
BioProject: PRJNA587094
BioSample: SAMN13176149
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384181 15723 1084887 0.44 SG22_145.fastq, SRR10384181, SRR10384181.sralite SRA
SRX7084953 SRP227931 OTHER SINGLE
GSM4146866: MAX_181019_raft15_A01_G001_0226-51; Homo sapiens; OTHER
Sample: SRS5599343
BioProject: PRJNA587094
BioSample: SAMN13176148
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384182 6416 442704 0.21 SG15_131.fastq, SRR10384182, SRR10384182.sralite SRA
SRX7084954 SRP227931 OTHER SINGLE
GSM4146771: Day7_rafts1-10_technical_rep1; Homo sapiens; OTHER
Sample: SRS5599344
BioProject: PRJNA587094
BioSample: SAMN13176137
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: RBP-lentiCRISPR infected HEK293T
time point: Day7
treatment: None
isolation: lentiCRISPR bulk
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384087 2349219 176191425 66.57 EWG19_S16_L003_R1_001.fastq.gz, SRR10384087, SRR10384087.sralite SRA
SRX7084955 SRP227931 OTHER SINGLE
GSM4146772: Day7_rafts1-10_technical_rep2; Homo sapiens; OTHER
Sample: SRS5599345
BioProject: PRJNA587094
BioSample: SAMN13176136
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: RBP-lentiCRISPR infected HEK293T
time point: Day7
treatment: None
isolation: lentiCRISPR bulk
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384088 2262730 169704750 63.53 EWG20_S17_L003_R1_001.fastq.gz, SRR10384088, SRR10384088.sralite SRA
SRX7084956 SRP227931 OTHER SINGLE
GSM4146773: Day7_rafts11-20_technical_rep1; Homo sapiens; OTHER
Sample: SRS5599346
BioProject: PRJNA587094
BioSample: SAMN13176135
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: RBP-lentiCRISPR infected HEK293T
time point: Day7
treatment: None
isolation: lentiCRISPR bulk
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384089 4150501 311287575 106.43 EWG21_S32_L004_R1_001.fastq.gz, SRR10384089, SRR10384089.sralite SRA
SRX7084957 SRP227931 OTHER SINGLE
GSM4146774: Day7_rafts11-20_technical_rep2; Homo sapiens; OTHER
Sample: SRS5599347
BioProject: PRJNA587094
BioSample: SAMN13176134
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: RBP-lentiCRISPR infected HEK293T
time point: Day7
treatment: None
isolation: lentiCRISPR bulk
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384090 2563695 192277125 69.7 EWG22_S33_L004_R1_001.fastq.gz, SRR10384090, SRR10384090.sralite SRA
SRX7084958 SRP227931 OTHER SINGLE
GSM4146775: MAX_181019_raft10_A01_G001_0215-15; Homo sapiens; OTHER
Sample: SRS5599348
BioProject: PRJNA587094
BioSample: SAMN13176133
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384091 195746 20159950 5.15 SG35_131.fastq, SRR10384091, SRR10384091.sralite SRA
SRX7084959 SRP227931 OTHER SINGLE
GSM4146776: MAX_181019_raft5_A01_G001_0263-40; Homo sapiens; OTHER
Sample: SRS5599349
BioProject: PRJNA587094
BioSample: SAMN13176132
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384092 92089 6354141 2.01 SG26_144.fastq, SRR10384092, SRR10384092.sralite SRA
SRX7084960 SRP227931 OTHER SINGLE
GSM4146777: MAX_181019_raft2_A01_G001_0084-48; Homo sapiens; OTHER
Sample: SRS5599350
BioProject: PRJNA587094
BioSample: SAMN13176131
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384093 554082 58063730 16.2 SG40_143.fastq, SRR10384093, SRR10384093.sralite SRA
SRX7084961 SRP227931 OTHER SINGLE
GSM4146778: MAX_181019_raft2_A01_G001_0249-18; Homo sapiens; OTHER
Sample: SRS5599351
BioProject: PRJNA587094
BioSample: SAMN13176130
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384094 35958 2481102 0.9 SG8_143.fastq, SRR10384094, SRR10384094.sralite SRA
SRX7084962 SRP227931 OTHER SINGLE
GSM4146779: MAX_181019_raft2_A01_G001_0155-58; Homo sapiens; OTHER
Sample: SRS5599352
BioProject: PRJNA587094
BioSample: SAMN13176129
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384095 11097 765693 0.26 SG7_131.fastq, SRR10384095, SRR10384095.sralite SRA
SRX7084963 SRP227931 OTHER SINGLE
GSM4146780: MAX_181019_raft18_A01_G001_0138-76; Homo sapiens; OTHER
Sample: SRS5599353
BioProject: PRJNA587094
BioSample: SAMN13176128
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384096 34828 2403132 0.75 SG23_130.fastq, SRR10384096, SRR10384096.sralite SRA
SRX7084964 SRP227931 OTHER SINGLE
GSM4146781: MAX_181019_raft1_A01_G001_0004-8; Homo sapiens; OTHER
Sample: SRS5599354
BioProject: PRJNA587094
BioSample: SAMN13176127
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384097 55654 3840126 1.15 SG20_145.fastq, SRR10384097, SRR10384097.sralite SRA
SRX7084965 SRP227931 OTHER SINGLE
GSM4146782: MAX_181019_raft6_A01_G001_0216-55; Homo sapiens; OTHER
Sample: SRS5599355
BioProject: PRJNA587094
BioSample: SAMN13176126
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384098 28848 1990512 0.67 SG10_145.fastq, SRR10384098, SRR10384098.sralite SRA
SRX7084966 SRP227931 OTHER SINGLE
GSM4146783: MAX_181019_raft14_A01_G001_0177-8; Homo sapiens; OTHER
Sample: SRS5599356
BioProject: PRJNA587094
BioSample: SAMN13176125
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384099 20749 1431681 0.55 SG21_131.fastq, SRR10384099, SRR10384099.sralite SRA
SRX7084967 SRP227931 OTHER SINGLE
GSM4146784: MAX_181019_raft14_A01_G001_0083-1; Homo sapiens; OTHER
Sample: SRS5599357
BioProject: PRJNA587094
BioSample: SAMN13176122
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384100 30609 2112021 0.7 SG21_130.fastq, SRR10384100, SRR10384100.sralite SRA
SRX7084968 SRP227931 OTHER SINGLE
GSM4146785: MAX_181019_raft15_A01_G001_0217-69; Homo sapiens; OTHER
Sample: SRS5599358
BioProject: PRJNA587094
BioSample: SAMN13176121
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384101 31304 2159976 0.64 SG15_130.fastq, SRR10384101, SRR10384101.sralite SRA
SRX7084969 SRP227931 OTHER SINGLE
GSM4146786: MAX_181019_raft4_A01_G001_0032-16; Homo sapiens; OTHER
Sample: SRS5599359
BioProject: PRJNA587094
BioSample: SAMN13176120
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384102 36021 2485449 0.81 SG3_130.fastq, SRR10384102, SRR10384102.sralite SRA
SRX7084970 SRP227931 OTHER SINGLE
GSM4146867: MAX_181019_raft15_A01_G001_0318-97; Homo sapiens; OTHER
Sample: SRS5599360
BioProject: PRJNA587094
BioSample: SAMN13176147
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384183 1486 102534 0.11 SG15_133.fastq, SRR10384183, SRR10384183.sralite SRA
SRX7084971 SRP227931 OTHER SINGLE
GSM4146868: MAX_181019_raft16_A01_G001_0057-28; Homo sapiens; OTHER
Sample: SRS5599361
BioProject: PRJNA587094
BioSample: SAMN13176146
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384184 18091 1248279 0.43 SG16_142.fastq, SRR10384184, SRR10384184.sralite SRA
SRX7084972 SRP227931 OTHER SINGLE
GSM4146869: MAX_181019_raft17_A01_G001_0041-83; Homo sapiens; OTHER
Sample: SRS5599362
BioProject: PRJNA587094
BioSample: SAMN13176145
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384185 2315 159735 0.13 SG16_144.fastq, SRR10384185, SRR10384185.sralite SRA
SRX7084973 SRP227931 OTHER SINGLE
GSM4146870: MAX_181019_raft17_A01_G001_0184-84; Homo sapiens; OTHER
Sample: SRS5599363
BioProject: PRJNA587094
BioSample: SAMN13176144
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384186 16647 1148643 0.43 SG17_131.fastq, SRR10384186, SRR10384186.sralite SRA
SRX7084974 SRP227931 OTHER SINGLE
GSM4146871: MAX_181019_raft17_A01_G001_0248-19; Homo sapiens; OTHER
Sample: SRS5599364
BioProject: PRJNA587094
BioSample: SAMN13176143
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384187 13267 855910 0.44 SG35_142.fastq, SRR10384187, SRR10384187.sralite SRA
SRX7084975 SRP227931 OTHER SINGLE
GSM4146872: MAX_181019_raft17_A01_G001_0290-46; Homo sapiens; OTHER
Sample: SRS5599365
BioProject: PRJNA587094
BioSample: SAMN13176142
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384188 15968 1387400 0.65 SG35_144.fastq, SRR10384188, SRR10384188.sralite SRA
SRX7084976 SRP227931 OTHER SINGLE
GSM4146873: MAX_181019_raft18_A01_G001_0050-36; Homo sapiens; OTHER
Sample: SRS5599366
BioProject: PRJNA587094
BioSample: SAMN13176141
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384189 29861 3042043 1.08 SG36_145.fastq, SRR10384189, SRR10384189.sralite SRA
SRX7084977 SRP227931 OTHER SINGLE
GSM4146874: MAX_181019_raft18_A01_G001_0204-15; Homo sapiens; OTHER
Sample: SRS5599367
BioProject: PRJNA587094
BioSample: SAMN13176140
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384190 3101 213969 0.15 SG23_131.fastq, SRR10384190, SRR10384190.sralite SRA
SRX7084978 SRP227931 OTHER SINGLE
GSM4146875: MAX_181019_raft19_A01_G001_0144-87; Homo sapiens; OTHER
Sample: SRS5599368
BioProject: PRJNA587094
BioSample: SAMN13176139
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384191 168248 16882474 5.62 SG39_143.fastq, SRR10384191, SRR10384191.sralite SRA
SRX7084979 SRP227931 OTHER SINGLE
GSM4146787: MAX_181019_raft3_A01_G001_0245-77; Homo sapiens; OTHER
Sample: SRS5599369
BioProject: PRJNA587094
BioSample: SAMN13176119
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384103 35214 2429766 0.57 SG5_133.fastq, SRR10384103, SRR10384103.sralite SRA
SRX7084980 SRP227931 OTHER SINGLE
GSM4146788: MAX_181019_raft16_A01_G001_0133-57; Homo sapiens; OTHER
Sample: SRS5599370
BioProject: PRJNA587094
BioSample: SAMN13176118
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384104 30283 2089527 0.59 SG16_143.fastq, SRR10384104, SRR10384104.sralite SRA
SRX7084981 SRP227931 OTHER SINGLE
GSM4146789: MAX_181019_raft6_A01_G001_0321-20; Homo sapiens; OTHER
Sample: SRS5599371
BioProject: PRJNA587094
BioSample: SAMN13176117
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384105 31500 2173500 0.68 SG31_131.fastq, SRR10384105, SRR10384105.sralite SRA
SRX7084982 SRP227931 OTHER SINGLE
GSM4146790: MAX_181019_raft19_A01_G001_0067-38; Homo sapiens; OTHER
Sample: SRS5599372
BioProject: PRJNA587094
BioSample: SAMN13176124
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384106 55712 3844128 1.31 SG24_142.fastq, SRR10384106, SRR10384106.sralite SRA
SRX7084983 SRP227931 OTHER SINGLE
GSM4146791: MAX_181019_raft10_A01_G001_0178-9; Homo sapiens; OTHER
Sample: SRS5599373
BioProject: PRJNA587094
BioSample: SAMN13176123
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384107 18611 1284159 0.45 SG13_130.fastq, SRR10384107, SRR10384107.sralite SRA
SRX7084984 SRP227931 OTHER SINGLE
GSM4146792: MAX_181019_raft5_A01_G001_0167-39; Homo sapiens; OTHER
Sample: SRS5599374
BioProject: PRJNA587094
BioSample: SAMN13176116
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384108 72249 4985181 1.41 SG25_133.fastq, SRR10384108, SRR10384108.sralite SRA
SRX7084985 SRP227931 OTHER SINGLE
GSM4146793: MAX_181019_raft1_A01_G001_0260-5; Homo sapiens; OTHER
Sample: SRS5599375
BioProject: PRJNA587094
BioSample: SAMN13176115
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384109 20245 1629901 0.83 SG33_131.fastq, SRR10384109, SRR10384109.sralite SRA
SRX7084986 SRP227931 OTHER SINGLE
GSM4146794: MAX_181019_raft10_A01_G001_0047-27; Homo sapiens; OTHER
Sample: SRS5599376
BioProject: PRJNA587094
BioSample: SAMN13176114
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384110 36426 2513394 0.81 SG12_144.fastq, SRR10384110, SRR10384110.sralite SRA
SRX7084987 SRP227931 OTHER SINGLE
GSM4146795: MAX_181019_raft8_A01_G001_0025-45; Homo sapiens; OTHER
Sample: SRS5599377
BioProject: PRJNA587094
BioSample: SAMN13176113
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384111 127576 12290832 4.16 SG35_143.fastq, SRR10384111, SRR10384111.sralite SRA
SRX7084988 SRP227931 OTHER SINGLE
GSM4146796: MAX_181019_raft18_A01_G001_0210-85; Homo sapiens; OTHER
Sample: SRS5599378
BioProject: PRJNA587094
BioSample: SAMN13176112
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384112 725242 71535091 33.92 SG42_132.fastq, SRR10384112, SRR10384112.sralite SRA
SRX7084989 SRP227931 OTHER SINGLE
GSM4146797: MAX_181019_raft12_A01_G001_0292-60; Homo sapiens; OTHER
Sample: SRS5599379
BioProject: PRJNA587094
BioSample: SAMN13176111
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384113 23514 1622466 0.6 SG27_133.fastq, SRR10384113, SRR10384113.sralite SRA
SRX7084990 SRP227931 OTHER SINGLE
GSM4146798: MAX_181019_raft4_A01_G001_0132-56; Homo sapiens; OTHER
Sample: SRS5599380
BioProject: PRJNA587094
BioSample: SAMN13176110
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384114 18379 1268151 0.45 SG3_133.fastq, SRR10384114, SRR10384114.sralite SRA
SRX7084991 SRP227931 OTHER SINGLE
GSM4146799: MAX_181019_raft15_A01_G001_0096-86; Homo sapiens; OTHER
Sample: SRS5599381
BioProject: PRJNA587094
BioSample: SAMN13176109
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384115 22946 1583274 0.61 SG21_133.fastq, SRR10384115, SRR10384115.sralite SRA
SRX7084992 SRP227931 OTHER SINGLE
GSM4146800: MAX_181019_raft5_A01_G001_0081-87; Homo sapiens; OTHER
Sample: SRS5599382
BioProject: PRJNA587094
BioSample: SAMN13176108
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384116 55707 3843783 1.28 SG25_131.fastq, SRR10384116, SRR10384116.sralite SRA
SRX7084993 SRP227931 OTHER SINGLE
GSM4146801: MAX_181019_raft9_A01_G001_0133-70; Homo sapiens; OTHER
Sample: SRS5599383
BioProject: PRJNA587094
BioSample: SAMN13176107
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384117 68910 4754790 1.69 SG11_131.fastq, SRR10384117, SRR10384117.sralite SRA
SRX7084994 SRP227931 OTHER SINGLE
GSM4146802: MAX_181019_raft4_A01_G001_0260-30; Homo sapiens; OTHER
Sample: SRS5599384
BioProject: PRJNA587094
BioSample: SAMN13176106
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: human embryonic kidney
cell line: Colony from RBP-lentiCRISPR infected HEK293T
time point: Day 10
treatment: 500 um Sodium Arsenite, 1 hr
isolation: targeted microRaft
Original files (1)
human embryonic kidney
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR10384118 65505 4519845 1.57 SG4_143.fastq, SRR10384118, SRR10384118.sralite SRA

Linked Publications (1)

Pooled CRISPR screens with imaging on microraft arrays reveals stress granule-regulatory factors.
Nature methods · 2020

Data Files (107)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— EWG17_S14_L003_R1_001.fastq.gz OTHER 50.0 MB link
— EWG18_S15_L003_R1_001.fastq.gz OTHER 60.6 MB link
— EWG19_S16_L003_R1_001.fastq.gz OTHER 66.6 MB link
— EWG20_S17_L003_R1_001.fastq.gz OTHER 63.5 MB link
— EWG21_S32_L004_R1_001.fastq.gz OTHER 106.4 MB link
— EWG22_S33_L004_R1_001.fastq.gz OTHER 69.7 MB link
— SG10_144.fastq OTHER 163.8 KB link
— SG10_145.fastq OTHER 686.1 KB link
— SG11_130.fastq OTHER 92.2 KB link
— SG11_131.fastq OTHER 1.7 MB link
— SG11_133.fastq OTHER 102.4 KB link
— SG12_144.fastq OTHER 829.4 KB link
— SG12_145.fastq OTHER 706.6 KB link
— SG13_130.fastq OTHER 460.8 KB link
— SG14_142.fastq OTHER 81.9 KB link
— SG15_130.fastq OTHER 655.4 KB link
— SG15_131.fastq OTHER 215.0 KB link
— SG15_132.fastq OTHER 1.4 MB link
— SG15_133.fastq OTHER 112.6 KB link
— SG16_142.fastq OTHER 440.3 KB link
— SG16_143.fastq OTHER 604.2 KB link
— SG16_144.fastq OTHER 133.1 KB link
— SG16_145.fastq OTHER 604.2 KB link
— SG17_130.fastq OTHER 532.5 KB link
— SG17_131.fastq OTHER 440.3 KB link
— SG17_132.fastq OTHER 2.0 MB link
— SG20_142.fastq OTHER 481.3 KB link
— SG20_145.fastq OTHER 1.1 MB link
— SG21_130.fastq OTHER 716.8 KB link
— SG21_131.fastq OTHER 563.2 KB link
— SG21_133.fastq OTHER 624.6 KB link
— SG22_142.fastq OTHER 1.0 MB link
— SG22_143.fastq OTHER 2.5 MB link
— SG22_145.fastq OTHER 450.6 KB link
— SG23_130.fastq OTHER 768.0 KB link
— SG23_131.fastq OTHER 153.6 KB link
— SG23_133.fastq OTHER 337.9 KB link
— SG24_142.fastq OTHER 1.3 MB link
— SG25_130.fastq OTHER 1.0 MB link
— SG25_131.fastq OTHER 1.3 MB link
— SG25_132.fastq OTHER 1.5 MB link
— SG25_133.fastq OTHER 1.4 MB link
— SG26_142.fastq OTHER 1.5 MB link
— SG26_143.fastq OTHER 1.1 MB link
— SG26_144.fastq OTHER 2.0 MB link
— SG27_130.fastq OTHER 297.0 KB link
— SG27_131.fastq OTHER 809.0 KB link
— SG27_133.fastq OTHER 614.4 KB link
— SG28_145.fastq OTHER 5.0 MB link
— SG29_130.fastq OTHER 133.1 KB link
— SG29_133.fastq OTHER 573.4 KB link
— SG30_142.fastq OTHER 2.3 MB link
— SG30_143.fastq OTHER 972.8 KB link
— SG30_144.fastq OTHER 358.4 KB link
— SG30_145.fastq OTHER 983.0 KB link
— SG31_130.fastq OTHER 81.9 KB link
— SG31_131.fastq OTHER 696.3 KB link
— SG31_133.fastq OTHER 184.3 KB link
— SG3_130.fastq OTHER 829.4 KB link
— SG3_131.fastq OTHER 983.0 KB link
— SG3_133.fastq OTHER 460.8 KB link
— SG32_142.fastq OTHER 419.8 KB link
— SG32_144.fastq OTHER 2.2 MB link
— SG33_131.fastq OTHER 849.9 KB link
— SG33_132.fastq OTHER 6.7 MB link
— SG33_133.fastq OTHER 276.5 KB link
— SG33_143.fastq OTHER 276.5 KB link
— SG33_145.fastq OTHER 3.2 MB link
— SG34_131.fastq OTHER 1.7 MB link
— SG34_133.fastq OTHER 1.6 MB link
— SG34_142.fastq OTHER 348.2 KB link
— SG34_143.fastq OTHER 4.7 MB link
— SG34_144.fastq OTHER 5.4 MB link
— SG34_145.fastq OTHER 4.2 MB link
— SG35_131.fastq OTHER 5.1 MB link
— SG35_133.fastq OTHER 6.5 MB link
— SG35_142.fastq OTHER 450.6 KB link
— SG35_143.fastq OTHER 4.2 MB link
— SG35_144.fastq OTHER 665.6 KB link
— SG35_145.fastq OTHER 7.4 MB link
— SG36_132.fastq OTHER 10.5 MB link
— SG36_142.fastq OTHER 6.5 MB link
— SG36_143.fastq OTHER 2.6 MB link
— SG36_144.fastq OTHER 12.5 MB link
— SG36_145.fastq OTHER 1.1 MB link
— SG37_143.fastq OTHER 10.2 MB link
— SG37_144.fastq OTHER 143.4 KB link
— SG37_145.fastq OTHER 7.6 MB link
— SG38_132.fastq OTHER 36.0 MB link
— SG38_143.fastq OTHER 4.3 MB link
— SG39_143.fastq OTHER 5.6 MB link
— SG40_132.fastq OTHER 6.3 MB link
— SG40_143.fastq OTHER 16.2 MB link
— SG41_132.fastq OTHER 48.0 MB link
— SG4_142.fastq OTHER 368.6 KB link
— SG4_143.fastq OTHER 1.6 MB link
— SG4_144.fastq OTHER 235.5 KB link
— SG42_132.fastq OTHER 33.9 MB link
— SG5_133.fastq OTHER 583.7 KB link
— SG6_142.fastq OTHER 153.6 KB link
— SG7_131.fastq OTHER 266.2 KB link
— SG7_132.fastq OTHER 583.7 KB link
— SG7_133.fastq OTHER 378.9 KB link
— SG8_143.fastq OTHER 921.6 KB link
— SG8_145.fastq OTHER 716.8 KB link
— SG9_130.fastq OTHER 92.2 KB link
— SG9_131.fastq OTHER 593.9 KB link