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GSE39873

GSE GEO
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LIN28 binds messenger RNAs at GGAGA motifs and regulates splicing factor abundance

Organism: Homo sapiens
Platform: GPL9052
Samples: 26
Experiment Types:
Expression profiling by array Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing
Submitted: Aug 03 2012
Last Updated: May 15 2019
Status: Public on Sep 10 2012
Contact: Gene,,Yeo (UCSD)

Relations

SuperSeries of: GSE39855 SuperSeries of: GSE39872 BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA171936

Summary

This SuperSeries is composed of the SubSeries listed below.

Overall Design

Refer to individual Series

Analysis (3 steps)

View Data Processing
Processing steps for GSE39873
  1. Data processed using Affymetrix package (Affy Power Tools) apt-probeset-summarize.
  2. Iter-plier algorithm used to quantify probesets.
  3. HJAY_r2.pgf

Supplementary Files (1)

GSE39873_RAW.tar Download
GEO Samples (26)
GSM980412 GSM980413 GSM980414 GSM980415 GSM980416 GSM980417 GSM980418 GSM980419 GSM980420 GSM980421 GSM980422 GSM980423 GSM980424 GSM980425 GSM980426 GSM980427 GSM980428 GSM980429 GSM980593 GSM980594 GSM980595 GSM980596 GSM980597 GSM980598 GSM980599 GSM980600

Dataset Citations (1)

LIN28 binds messenger RNAs at GGAGA motifs and regulates splicing factor abundance.
PMID 22959275 · 2012 · Molecular cell
Melissa L Wilbert, Stephanie C Huelga, Katannya Kapeli, Thomas J Stark, Tiffany Y Liang, Stella X Chen, Bernice Y Yan, Jason L Nathanson, Kasey R Hutt, Michael T Lovci, Hilal Kazan, Anthony Q Vu, Katlin B Massirer, Quaid Morris, Shawn Hoon, Gene W Yeo

Linked Publications (1)

LIN28 binds messenger RNAs at GGAGA motifs and regulates splicing factor abundance.
Molecular cell · 2012