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GSE40653

GSE GEO
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Divergent roles of ALS-linked proteins FUS/TLS and TDP-43 intersect in processing long pre-mRNAs

Organism: Mus musculus
Platform: GPL9250
Samples: 34
Experiment Types:
Expression profiling by array Expression profiling by high throughput sequencing
Submitted: Sep 06 2012
Last Updated: May 15 2019
Status: Public on Sep 30 2012
Contact: Gene,,Yeo (UCSD)

Relations

SuperSeries of: GSE40649 SuperSeries of: GSE40651 SuperSeries of: GSE40652 BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA174531

Summary

This SuperSeries is composed of the SubSeries listed below.

Overall Design

Refer to individual Series

Analysis (2 steps)

View Data Processing
Processing steps for GSE40653
  1. Data processed using Affymetrix package (Affy Power Tools) apt-probeset-summarize.
  2. Iter-plier algorithm used to quantify probesets.

Supplementary Files (1)

GSE40653_RAW.tar Download
GEO Samples (34)
GSM998840 GSM998841 GSM998842 GSM998843 GSM998844 GSM998845 GSM998846 GSM998847 GSM998848 GSM998849 GSM998850 GSM998871 GSM998872 GSM998873 GSM998874 GSM998875 GSM998876 GSM998877 GSM998878 GSM998879 GSM998880 GSM998881 GSM998882 GSM998883 GSM998884 GSM998885 GSM998886 GSM998887 GSM998888 GSM998889 GSM998890 GSM998891 GSM998892 GSM998893

Dataset Citations (1)

Divergent roles of ALS-linked proteins FUS/TLS and TDP-43 intersect in processing long pre-mRNAs.
PMID 23023293 · 2012 · Nature neuroscience
Clotilde Lagier-Tourenne, Magdalini Polymenidou, Kasey R Hutt, Anthony Q Vu, Michael Baughn, Stephanie C Huelga, Kevin M Clutario, Shuo-Chien Ling, Tiffany Y Liang, Curt Mazur, Edward Wancewicz, Aneeza S Kim, Andy Watt, Sue Freier, Geoffrey G Hicks, John Paul Donohue, Lily Shiue, C Frank Bennett, John Ravits, Don W Cleveland, Gene W Yeo

Linked Publications (1)

Divergent roles of ALS-linked proteins FUS/TLS and TDP-43 intersect in processing long pre-mRNAs.
Nature neuroscience · 2012