#!/usr/bin/env bash
# Bulk download script for GSE101938
# Generated from Yeo Lab Publications Database
# Total files: 205

OUTDIR="GSE101938"
mkdir -p "$OUTDIR"
cd "$OUTDIR"

# --- GEO supplementary files ---
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101938/suppl/GSE101938_RAW.tar" -O "GSE101938_RAW.tar"

# --- SRA run files ---
# Tip: use 'fasterq-dump' from SRA Toolkit for FASTQ conversion
#      with optional renaming to original submitted FASTQ names.
# Set to 1 to rename SRR outputs (e.g. SRR_1.fastq.gz -> sample_R1.fastq.gz)
RENAME_SRA_TO_ORIGINAL=1

_compress_if_exists() {
  local stem="$1"
  if [ -f "${stem}.fastq" ]; then
    gzip -f "${stem}.fastq"
    echo "${stem}.fastq.gz"
    return 0
  fi
  if [ -f "${stem}.fq" ]; then
    gzip -f "${stem}.fq"
    echo "${stem}.fq.gz"
    return 0
  fi
  return 1
}

# Option A: Download via SRA Toolkit (recommended)
fasterq-dump --split-files "SRR5874555"
gz1="$(_compress_if_exists 'SRR5874555_1' || true)"
gz2="$(_compress_if_exists 'SRR5874555_2' || true)"
gzs="$(_compress_if_exists 'SRR5874555' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_1_MMLVMn_IP_S1_L001_R1_001.C01_AS_1_MMLVMn_IP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_1_MMLVMn_IP_S1_L001_R2_001.C01_AS_1_MMLVMn_IP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874556"
gz1="$(_compress_if_exists 'SRR5874556_1' || true)"
gz2="$(_compress_if_exists 'SRR5874556_2' || true)"
gzs="$(_compress_if_exists 'SRR5874556' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_1_MMLVMn_IP_S1_L001_R1_001.D08fixed_AS_1_MMLVMn_IP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_1_MMLVMn_IP_S1_L001_R2_001.D08fixed_AS_1_MMLVMn_IP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874557"
gz1="$(_compress_if_exists 'SRR5874557_1' || true)"
gz2="$(_compress_if_exists 'SRR5874557_2' || true)"
gzs="$(_compress_if_exists 'SRR5874557' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_11_MMLVMn_input_S10_L001_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_11_MMLVMn_input_S10_L001_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874558"
gz1="$(_compress_if_exists 'SRR5874558_1' || true)"
gz2="$(_compress_if_exists 'SRR5874558_2' || true)"
gzs="$(_compress_if_exists 'SRR5874558' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_2_SSIIMn_IP_S2_L001_R1_001.C01_AS_2_SSIIMn_IP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_2_SSIIMn_IP_S2_L001_R2_001.C01_AS_2_SSIIMn_IP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874559"
gz1="$(_compress_if_exists 'SRR5874559_1' || true)"
gz2="$(_compress_if_exists 'SRR5874559_2' || true)"
gzs="$(_compress_if_exists 'SRR5874559' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_4_SSIVMn_IP_S4_L001_R1_001.C01_AS_4_SSIVMn_IP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_4_SSIVMn_IP_S4_L001_R2_001.C01_AS_4_SSIVMn_IP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874560"
gz1="$(_compress_if_exists 'SRR5874560_1' || true)"
gz2="$(_compress_if_exists 'SRR5874560_2' || true)"
gzs="$(_compress_if_exists 'SRR5874560' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_2_SSIIMn_IP_S2_L001_R1_001.D08fixed_AS_2_SSIIMn_IP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_2_SSIIMn_IP_S2_L001_R2_001.D08fixed_AS_2_SSIIMn_IP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874561"
gz1="$(_compress_if_exists 'SRR5874561_1' || true)"
gz2="$(_compress_if_exists 'SRR5874561_2' || true)"
gzs="$(_compress_if_exists 'SRR5874561' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_12_SSIIMn_input_S11_L001_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_12_SSIIMn_input_S11_L001_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874562"
gz1="$(_compress_if_exists 'SRR5874562_1' || true)"
gz2="$(_compress_if_exists 'SRR5874562_2' || true)"
gzs="$(_compress_if_exists 'SRR5874562' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_3_SSIIIMn_IP_S3_L001_R1_001.C01_AS_3_SSIIIMn_IP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_3_SSIIIMn_IP_S3_L001_R2_001.C01_AS_3_SSIIIMn_IP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874563"
gz1="$(_compress_if_exists 'SRR5874563_1' || true)"
gz2="$(_compress_if_exists 'SRR5874563_2' || true)"
gzs="$(_compress_if_exists 'SRR5874563' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_3_SSIIIMn_IP_S3_L001_R1_001.D08fixed_AS_3_SSIIIMn_IP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_3_SSIIIMn_IP_S3_L001_R2_001.D08fixed_AS_3_SSIIIMn_IP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874564"
gz1="$(_compress_if_exists 'SRR5874564_1' || true)"
gz2="$(_compress_if_exists 'SRR5874564_2' || true)"
gzs="$(_compress_if_exists 'SRR5874564' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_13_SSIIIMn_input_S12_L001_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_13_SSIIIMn_input_S12_L001_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874565"
gz1="$(_compress_if_exists 'SRR5874565_1' || true)"
gz2="$(_compress_if_exists 'SRR5874565_2' || true)"
gzs="$(_compress_if_exists 'SRR5874565' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_4_SSIVMn_IP_S4_L001_R1_001.D08fixed_AS_4_SSIVMn_IP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_4_SSIVMn_IP_S4_L001_R2_001.D08fixed_AS_4_SSIVMn_IP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874566"
gz1="$(_compress_if_exists 'SRR5874566_1' || true)"
gz2="$(_compress_if_exists 'SRR5874566_2' || true)"
gzs="$(_compress_if_exists 'SRR5874566' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_14_SSIVMn_input_S13_L001_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_14_SSIVMn_input_S13_L001_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874567"
gz1="$(_compress_if_exists 'SRR5874567_1' || true)"
gz2="$(_compress_if_exists 'SRR5874567_2' || true)"
gzs="$(_compress_if_exists 'SRR5874567' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_5_AffScMn_IP_S5_L001_R1_001.C01_AS_5_AffScMn_IP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_5_AffScMn_IP_S5_L001_R2_001.C01_AS_5_AffScMn_IP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874568"
gz1="$(_compress_if_exists 'SRR5874568_1' || true)"
gz2="$(_compress_if_exists 'SRR5874568_2' || true)"
gzs="$(_compress_if_exists 'SRR5874568' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_5_AffScMn_IP_S5_L001_R1_001.D08fixed_AS_5_AffScMn_IP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_5_AffScMn_IP_S5_L001_R2_001.D08fixed_AS_5_AffScMn_IP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874569"
gz1="$(_compress_if_exists 'SRR5874569_1' || true)"
gz2="$(_compress_if_exists 'SRR5874569_2' || true)"
gzs="$(_compress_if_exists 'SRR5874569' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_15_AffScMn_input_S14_L001_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_15_AffScMn_input_S14_L001_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874570"
gz1="$(_compress_if_exists 'SRR5874570_1' || true)"
gz2="$(_compress_if_exists 'SRR5874570_2' || true)"
gzs="$(_compress_if_exists 'SRR5874570' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_6_TGIRTMn_IP_S6_L001_R1_001.C01_AS_6_TGIRTMn_IP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_6_TGIRTMn_IP_S6_L001_R2_001.C01_AS_6_TGIRTMn_IP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874571"
gz1="$(_compress_if_exists 'SRR5874571_1' || true)"
gz2="$(_compress_if_exists 'SRR5874571_2' || true)"
gzs="$(_compress_if_exists 'SRR5874571' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_6_TGIRTMn_IP_S6_L001_R1_001.D08fixed_AS_6_TGIRTMn_IP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_6_TGIRTMn_IP_S6_L001_R2_001.D08fixed_AS_6_TGIRTMn_IP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874572"
gz1="$(_compress_if_exists 'SRR5874572_1' || true)"
gz2="$(_compress_if_exists 'SRR5874572_2' || true)"
gzs="$(_compress_if_exists 'SRR5874572' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_16_TGIRTMn_input_S15_L001_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_16_TGIRTMn_input_S15_L001_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874573"
gz1="$(_compress_if_exists 'SRR5874573_1' || true)"
gz2="$(_compress_if_exists 'SRR5874573_2' || true)"
gzs="$(_compress_if_exists 'SRR5874573' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_7_MaximaMn_IP_S7_L001_R1_001.C01_AS_7_MaximaMn_IP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_7_MaximaMn_IP_S7_L001_R2_001.C01_AS_7_MaximaMn_IP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874574"
gz1="$(_compress_if_exists 'SRR5874574_1' || true)"
gz2="$(_compress_if_exists 'SRR5874574_2' || true)"
gzs="$(_compress_if_exists 'SRR5874574' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_7_MaximaMn_IP_S7_L001_R1_001.D08fixed_AS_7_MaximaMn_IP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_7_MaximaMn_IP_S7_L001_R2_001.D08fixed_AS_7_MaximaMn_IP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874575"
gz1="$(_compress_if_exists 'SRR5874575_1' || true)"
gz2="$(_compress_if_exists 'SRR5874575_2' || true)"
gzs="$(_compress_if_exists 'SRR5874575' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_17_MaximaMn_input_S16_L001_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_17_MaximaMn_input_S16_L001_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874576"
gz1="$(_compress_if_exists 'SRR5874576_1' || true)"
gz2="$(_compress_if_exists 'SRR5874576_2' || true)"
gzs="$(_compress_if_exists 'SRR5874576' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_8_SSIII_IP_S8_L001_R1_001.C01_AS_8_SSIII_IP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_8_SSIII_IP_S8_L001_R2_001.C01_AS_8_SSIII_IP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874577"
gz1="$(_compress_if_exists 'SRR5874577_1' || true)"
gz2="$(_compress_if_exists 'SRR5874577_2' || true)"
gzs="$(_compress_if_exists 'SRR5874577' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_8_SSIII_IP_S8_L001_R1_001.D08fixed_AS_8_SSIII_IP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_8_SSIII_IP_S8_L001_R2_001.D08fixed_AS_8_SSIII_IP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874578"
gz1="$(_compress_if_exists 'SRR5874578_1' || true)"
gz2="$(_compress_if_exists 'SRR5874578_2' || true)"
gzs="$(_compress_if_exists 'SRR5874578' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_18_SSIII_input_S17_L001_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_18_SSIII_input_S17_L001_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874579"
gz1="$(_compress_if_exists 'SRR5874579_1' || true)"
gz2="$(_compress_if_exists 'SRR5874579_2' || true)"
gzs="$(_compress_if_exists 'SRR5874579' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_9_Maxima_IP_S9_L001_R1_001.C01_AS_9_Maxima_IP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_9_Maxima_IP_S9_L001_R2_001.C01_AS_9_Maxima_IP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874580"
gz1="$(_compress_if_exists 'SRR5874580_1' || true)"
gz2="$(_compress_if_exists 'SRR5874580_2' || true)"
gzs="$(_compress_if_exists 'SRR5874580' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_9_Maxima_IP_S9_L001_R1_001.D08fixed_AS_9_Maxima_IP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_9_Maxima_IP_S9_L001_R2_001.D08fixed_AS_9_Maxima_IP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874581"
gz1="$(_compress_if_exists 'SRR5874581_1' || true)"
gz2="$(_compress_if_exists 'SRR5874581_2' || true)"
gzs="$(_compress_if_exists 'SRR5874581' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_19_Maxima_input_S18_L001_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_19_Maxima_input_S18_L001_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874582"
gz1="$(_compress_if_exists 'SRR5874582_1' || true)"
gz2="$(_compress_if_exists 'SRR5874582_2' || true)"
gzs="$(_compress_if_exists 'SRR5874582' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_FOX2_AFFSC_CLIP_S105_L008_R1_001.A01_AS_FOX2_AFFSC_CLIP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_FOX2_AFFSC_CLIP_S105_L008_R2_001.A01_AS_FOX2_AFFSC_CLIP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874583"
gz1="$(_compress_if_exists 'SRR5874583_1' || true)"
gz2="$(_compress_if_exists 'SRR5874583_2' || true)"
gzs="$(_compress_if_exists 'SRR5874583' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_FOX2_AFFSC_CLIP_S105_L008_R1_001.B06_AS_FOX2_AFFSC_CLIP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_FOX2_AFFSC_CLIP_S105_L008_R2_001.B06_AS_FOX2_AFFSC_CLIP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874584"
gz1="$(_compress_if_exists 'SRR5874584_1' || true)"
gz2="$(_compress_if_exists 'SRR5874584_2' || true)"
gzs="$(_compress_if_exists 'SRR5874584' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FOX2_AFFSC_L000_R1_001.A01_FOX2_AFFSC_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FOX2_AFFSC_L000_R2_001.A01_FOX2_AFFSC_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874585"
gz1="$(_compress_if_exists 'SRR5874585_1' || true)"
gz2="$(_compress_if_exists 'SRR5874585_2' || true)"
gzs="$(_compress_if_exists 'SRR5874585' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FOX2_AFFSC_L000_R1_001.B06_FOX2_AFFSC_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FOX2_AFFSC_L000_R2_001.B06_FOX2_AFFSC_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874586"
gz1="$(_compress_if_exists 'SRR5874586_1' || true)"
gz2="$(_compress_if_exists 'SRR5874586_2' || true)"
gzs="$(_compress_if_exists 'SRR5874586' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_AMV_S70_L004_R1_001.X2A_AS_AMV_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_AMV_S70_L004_R2_001.X2A_AS_AMV_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874587"
gz1="$(_compress_if_exists 'SRR5874587_1' || true)"
gz2="$(_compress_if_exists 'SRR5874587_2' || true)"
gzs="$(_compress_if_exists 'SRR5874587' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_AMV_S70_L004_R1_001.X2B_AS_AMV_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_AMV_S70_L004_R2_001.X2B_AS_AMV_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874588"
gz1="$(_compress_if_exists 'SRR5874588_1' || true)"
gz2="$(_compress_if_exists 'SRR5874588_2' || true)"
gzs="$(_compress_if_exists 'SRR5874588' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_M_MLV_S71_L004_R1_001.X2A_AS_M_MLV_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_M_MLV_S71_L004_R2_001.X2A_AS_M_MLV_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874589"
gz1="$(_compress_if_exists 'SRR5874589_1' || true)"
gz2="$(_compress_if_exists 'SRR5874589_2' || true)"
gzs="$(_compress_if_exists 'SRR5874589' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_M_MLV_S71_L004_R1_001.X2B_AS_M_MLV_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_M_MLV_S71_L004_R2_001.X2B_AS_M_MLV_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874590"
gz1="$(_compress_if_exists 'SRR5874590_1' || true)"
gz2="$(_compress_if_exists 'SRR5874590_2' || true)"
gzs="$(_compress_if_exists 'SRR5874590' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_SuS2_S72_L004_R1_001.X2A_AS_SuS2_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_SuS2_S72_L004_R2_001.X2A_AS_SuS2_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874591"
gz1="$(_compress_if_exists 'SRR5874591_1' || true)"
gz2="$(_compress_if_exists 'SRR5874591_2' || true)"
gzs="$(_compress_if_exists 'SRR5874591' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_SuS2_S72_L004_R1_001.X2B_AS_SuS2_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_SuS2_S72_L004_R2_001.X2B_AS_SuS2_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874592"
gz1="$(_compress_if_exists 'SRR5874592_1' || true)"
gz2="$(_compress_if_exists 'SRR5874592_2' || true)"
gzs="$(_compress_if_exists 'SRR5874592' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FOX2_SSIII_L000_R1_001.A01_FOX2_SSIII_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FOX2_SSIII_L000_R2_001.A01_FOX2_SSIII_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874593"
gz1="$(_compress_if_exists 'SRR5874593_1' || true)"
gz2="$(_compress_if_exists 'SRR5874593_2' || true)"
gzs="$(_compress_if_exists 'SRR5874593' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FOX2_SSIII_L000_R1_001.B06_FOX2_SSIII_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FOX2_SSIII_L000_R2_001.B06_FOX2_SSIII_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874594"
gz1="$(_compress_if_exists 'SRR5874594_1' || true)"
gz2="$(_compress_if_exists 'SRR5874594_2' || true)"
gzs="$(_compress_if_exists 'SRR5874594' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_SSc3_S74_L004_R1_001.X2A_AS_SSc3_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_SSc3_S74_L004_R2_001.X2A_AS_SSc3_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874595"
gz1="$(_compress_if_exists 'SRR5874595_1' || true)"
gz2="$(_compress_if_exists 'SRR5874595_2' || true)"
gzs="$(_compress_if_exists 'SRR5874595' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_SSc3_S74_L004_R1_001.X2B_AS_SSc3_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_SSc3_S74_L004_R2_001.X2B_AS_SSc3_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874596"
gz1="$(_compress_if_exists 'SRR5874596_1' || true)"
gz2="$(_compress_if_exists 'SRR5874596_2' || true)"
gzs="$(_compress_if_exists 'SRR5874596' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_FOX2_SSIII_CLIP_S109_L008_R1_001.A01_AS_FOX2_SSIII_CLIP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_FOX2_SSIII_CLIP_S109_L008_R2_001.A01_AS_FOX2_SSIII_CLIP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874597"
gz1="$(_compress_if_exists 'SRR5874597_1' || true)"
gz2="$(_compress_if_exists 'SRR5874597_2' || true)"
gzs="$(_compress_if_exists 'SRR5874597' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_FOX2_SSIII_CLIP_S109_L008_R1_001.B06_AS_FOX2_SSIII_CLIP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_FOX2_SSIII_CLIP_S109_L008_R2_001.B06_AS_FOX2_SSIII_CLIP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874598"
gz1="$(_compress_if_exists 'SRR5874598_1' || true)"
gz2="$(_compress_if_exists 'SRR5874598_2' || true)"
gzs="$(_compress_if_exists 'SRR5874598' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_FOX2_SS4_CLIP_S113_L008_R1_001.A01_AS_FOX2_SS4_CLIP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_FOX2_SS4_CLIP_S113_L008_R2_001.A01_AS_FOX2_SS4_CLIP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874599"
gz1="$(_compress_if_exists 'SRR5874599_1' || true)"
gz2="$(_compress_if_exists 'SRR5874599_2' || true)"
gzs="$(_compress_if_exists 'SRR5874599' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_FOX2_SS4_CLIP_S113_L008_R1_001.B06_AS_FOX2_SS4_CLIP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_FOX2_SS4_CLIP_S113_L008_R2_001.B06_AS_FOX2_SS4_CLIP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874600"
gz1="$(_compress_if_exists 'SRR5874600_1' || true)"
gz2="$(_compress_if_exists 'SRR5874600_2' || true)"
gzs="$(_compress_if_exists 'SRR5874600' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_SSc4_S75_L004_R1_001.X2A_AS_SSc4_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_SSc4_S75_L004_R2_001.X2A_AS_SSc4_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874601"
gz1="$(_compress_if_exists 'SRR5874601_1' || true)"
gz2="$(_compress_if_exists 'SRR5874601_2' || true)"
gzs="$(_compress_if_exists 'SRR5874601' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_SSc4_S75_L004_R1_001.X2B_AS_SSc4_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_SSc4_S75_L004_R2_001.X2B_AS_SSc4_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874602"
gz1="$(_compress_if_exists 'SRR5874602_1' || true)"
gz2="$(_compress_if_exists 'SRR5874602_2' || true)"
gzs="$(_compress_if_exists 'SRR5874602' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FOX2_SS4_L000_R1_001.A01_FOX2_SS4_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FOX2_SS4_L000_R2_001.A01_FOX2_SS4_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874603"
gz1="$(_compress_if_exists 'SRR5874603_1' || true)"
gz2="$(_compress_if_exists 'SRR5874603_2' || true)"
gzs="$(_compress_if_exists 'SRR5874603' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FOX2_SS4_L000_R1_001.B06_FOX2_SS4_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FOX2_SS4_L000_R2_001.B06_FOX2_SS4_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874604"
gz1="$(_compress_if_exists 'SRR5874604_1' || true)"
gz2="$(_compress_if_exists 'SRR5874604_2' || true)"
gzs="$(_compress_if_exists 'SRR5874604' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FOX2_SS4in3B_CLIP_-AS45_S99_L007_R1_001.A01_FOX2_SS4in3B_CLIP_-AS45_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FOX2_SS4in3B_CLIP_-AS45_S99_L007_R2_001.A01_FOX2_SS4in3B_CLIP_-AS45_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874605"
gz1="$(_compress_if_exists 'SRR5874605_1' || true)"
gz2="$(_compress_if_exists 'SRR5874605_2' || true)"
gzs="$(_compress_if_exists 'SRR5874605' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FOX2_SS4in3B_CLIP_-AS45_S99_L007_R1_001.B06_FOX2_SS4in3B_CLIP_-AS45_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FOX2_SS4in3B_CLIP_-AS45_S99_L007_R2_001.B06_FOX2_SS4in3B_CLIP_-AS45_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874606"
gz1="$(_compress_if_exists 'SRR5874606_1' || true)"
gz2="$(_compress_if_exists 'SRR5874606_2' || true)"
gzs="$(_compress_if_exists 'SRR5874606' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FOX2_SS4in3B_L000_R1_001.A01_FOX2_SS4in3B_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FOX2_SS4in3B_L000_R2_001.A01_FOX2_SS4in3B_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874607"
gz1="$(_compress_if_exists 'SRR5874607_1' || true)"
gz2="$(_compress_if_exists 'SRR5874607_2' || true)"
gzs="$(_compress_if_exists 'SRR5874607' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FOX2_SS4in3B_L000_R1_001.B06_FOX2_SS4in3B_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FOX2_SS4in3B_L000_R2_001.B06_FOX2_SS4in3B_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874608"
gz1="$(_compress_if_exists 'SRR5874608_1' || true)"
gz2="$(_compress_if_exists 'SRR5874608_2' || true)"
gzs="$(_compress_if_exists 'SRR5874608' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_FOX2_SS4_MN_CLIP_S117_L008_R1_001.A01_AS_FOX2_SS4_MN_CLIP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_FOX2_SS4_MN_CLIP_S117_L008_R2_001.A01_AS_FOX2_SS4_MN_CLIP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874609"
gz1="$(_compress_if_exists 'SRR5874609_1' || true)"
gz2="$(_compress_if_exists 'SRR5874609_2' || true)"
gzs="$(_compress_if_exists 'SRR5874609' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_FOX2_SS4_MN_CLIP_S117_L008_R1_001.B06_AS_FOX2_SS4_MN_CLIP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_FOX2_SS4_MN_CLIP_S117_L008_R2_001.B06_AS_FOX2_SS4_MN_CLIP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874610"
gz1="$(_compress_if_exists 'SRR5874610_1' || true)"
gz2="$(_compress_if_exists 'SRR5874610_2' || true)"
gzs="$(_compress_if_exists 'SRR5874610' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_SS4Mn_S76_L004_R1_001.X2A_AS_SS4Mn_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_SS4Mn_S76_L004_R2_001.X2A_AS_SS4Mn_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874611"
gz1="$(_compress_if_exists 'SRR5874611_1' || true)"
gz2="$(_compress_if_exists 'SRR5874611_2' || true)"
gzs="$(_compress_if_exists 'SRR5874611' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_SS4Mn_S76_L004_R1_001.X2B_AS_SS4Mn_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_SS4Mn_S76_L004_R2_001.X2B_AS_SS4Mn_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874612"
gz1="$(_compress_if_exists 'SRR5874612_1' || true)"
gz2="$(_compress_if_exists 'SRR5874612_2' || true)"
gzs="$(_compress_if_exists 'SRR5874612' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FOX2_SS4_MN_L000_R1_001.A01_FOX2_SS4_MN_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FOX2_SS4_MN_L000_R2_001.A01_FOX2_SS4_MN_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874613"
gz1="$(_compress_if_exists 'SRR5874613_1' || true)"
gz2="$(_compress_if_exists 'SRR5874613_2' || true)"
gzs="$(_compress_if_exists 'SRR5874613' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FOX2_SS4_MN_L000_R1_001.B06_FOX2_SS4_MN_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FOX2_SS4_MN_L000_R2_001.B06_FOX2_SS4_MN_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874614"
gz1="$(_compress_if_exists 'SRR5874614_1' || true)"
gz2="$(_compress_if_exists 'SRR5874614_2' || true)"
gzs="$(_compress_if_exists 'SRR5874614' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_FOX2_TGIRT_CLIP_S121_L008_R1_001.A01_AS_FOX2_TGIRT_CLIP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_FOX2_TGIRT_CLIP_S121_L008_R2_001.A01_AS_FOX2_TGIRT_CLIP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874615"
gz1="$(_compress_if_exists 'SRR5874615_1' || true)"
gz2="$(_compress_if_exists 'SRR5874615_2' || true)"
gzs="$(_compress_if_exists 'SRR5874615' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_FOX2_TGIRT_CLIP_S121_L008_R1_001.B06_AS_FOX2_TGIRT_CLIP_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_FOX2_TGIRT_CLIP_S121_L008_R2_001.B06_AS_FOX2_TGIRT_CLIP_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874616"
gz1="$(_compress_if_exists 'SRR5874616_1' || true)"
gz2="$(_compress_if_exists 'SRR5874616_2' || true)"
gzs="$(_compress_if_exists 'SRR5874616' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_TiGER_S77_L004_R1_001.X2A_AS_TiGER_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_TiGER_S77_L004_R2_001.X2A_AS_TiGER_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874617"
gz1="$(_compress_if_exists 'SRR5874617_1' || true)"
gz2="$(_compress_if_exists 'SRR5874617_2' || true)"
gzs="$(_compress_if_exists 'SRR5874617' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_TiGER_S77_L004_R1_001.X2B_AS_TiGER_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_TiGER_S77_L004_R2_001.X2B_AS_TiGER_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874618"
gz1="$(_compress_if_exists 'SRR5874618_1' || true)"
gz2="$(_compress_if_exists 'SRR5874618_2' || true)"
gzs="$(_compress_if_exists 'SRR5874618' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FOX2_TGIRT_L000_R1_001.A01_FOX2_TGIRT_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FOX2_TGIRT_L000_R2_001.A01_FOX2_TGIRT_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874619"
gz1="$(_compress_if_exists 'SRR5874619_1' || true)"
gz2="$(_compress_if_exists 'SRR5874619_2' || true)"
gzs="$(_compress_if_exists 'SRR5874619' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FOX2_TGIRT_L000_R1_001.B06_FOX2_TGIRT_RBFOX2.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FOX2_TGIRT_L000_R2_001.B06_FOX2_TGIRT_RBFOX2.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874620"
gz1="$(_compress_if_exists 'SRR5874620_1' || true)"
gz2="$(_compress_if_exists 'SRR5874620_2' || true)"
gzs="$(_compress_if_exists 'SRR5874620' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_FOX2_AFFSC_IN_S106_L008_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_FOX2_AFFSC_IN_S106_L008_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874621"
gz1="$(_compress_if_exists 'SRR5874621_1' || true)"
gz2="$(_compress_if_exists 'SRR5874621_2' || true)"
gzs="$(_compress_if_exists 'SRR5874621' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_FOX2_SS4_IN_S114_L008_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_FOX2_SS4_IN_S114_L008_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874622"
gz1="$(_compress_if_exists 'SRR5874622_1' || true)"
gz2="$(_compress_if_exists 'SRR5874622_2' || true)"
gzs="$(_compress_if_exists 'SRR5874622' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_FOX2_SS4_MN_IN_S118_L008_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_FOX2_SS4_MN_IN_S118_L008_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874623"
gz1="$(_compress_if_exists 'SRR5874623_1' || true)"
gz2="$(_compress_if_exists 'SRR5874623_2' || true)"
gzs="$(_compress_if_exists 'SRR5874623' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_FOX2_SSIII_IN_S110_L008_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_FOX2_SSIII_IN_S110_L008_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874624"
gz1="$(_compress_if_exists 'SRR5874624_1' || true)"
gz2="$(_compress_if_exists 'SRR5874624_2' || true)"
gzs="$(_compress_if_exists 'SRR5874624' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_FOX2_TGIRT_IN_S122_L008_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_FOX2_TGIRT_IN_S122_L008_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874625"
gz1="$(_compress_if_exists 'SRR5874625_1' || true)"
gz2="$(_compress_if_exists 'SRR5874625_2' || true)"
gzs="$(_compress_if_exists 'SRR5874625' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FOX2_SS4in3B_IN_AS46_S100_L007_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FOX2_SS4in3B_IN_AS46_S100_L007_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874626"
gz1="$(_compress_if_exists 'SRR5874626_1' || true)"
gz2="$(_compress_if_exists 'SRR5874626_2' || true)"
gzs="$(_compress_if_exists 'SRR5874626' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TDP_AFFSC_L000_R1_001.C01_TDP_AFFSC_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TDP_AFFSC_L000_R2_001.C01_TDP_AFFSC_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874627"
gz1="$(_compress_if_exists 'SRR5874627_1' || true)"
gz2="$(_compress_if_exists 'SRR5874627_2' || true)"
gzs="$(_compress_if_exists 'SRR5874627' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TDP_AFFSC_L000_R1_001.D08fixed_TDP_AFFSC_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TDP_AFFSC_L000_R2_001.D08fixed_TDP_AFFSC_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874628"
gz1="$(_compress_if_exists 'SRR5874628_1' || true)"
gz2="$(_compress_if_exists 'SRR5874628_2' || true)"
gzs="$(_compress_if_exists 'SRR5874628' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TDP_SS4_MN_L000_R1_001.C01_TDP_SS4_MN_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TDP_SS4_MN_L000_R2_001.C01_TDP_SS4_MN_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874629"
gz1="$(_compress_if_exists 'SRR5874629_1' || true)"
gz2="$(_compress_if_exists 'SRR5874629_2' || true)"
gzs="$(_compress_if_exists 'SRR5874629' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TDP_SS4_MN_L000_R1_001.D08fixed_TDP_SS4_MN_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TDP_SS4_MN_L000_R2_001.D08fixed_TDP_SS4_MN_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874630"
gz1="$(_compress_if_exists 'SRR5874630_1' || true)"
gz2="$(_compress_if_exists 'SRR5874630_2' || true)"
gzs="$(_compress_if_exists 'SRR5874630' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TDP_SS4_L000_R1_001.C01_TDP_SS4_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TDP_SS4_L000_R2_001.C01_TDP_SS4_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874631"
gz1="$(_compress_if_exists 'SRR5874631_1' || true)"
gz2="$(_compress_if_exists 'SRR5874631_2' || true)"
gzs="$(_compress_if_exists 'SRR5874631' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TDP_SS4_L000_R1_001.D08fixed_TDP_SS4_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TDP_SS4_L000_R2_001.D08fixed_TDP_SS4_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874632"
gz1="$(_compress_if_exists 'SRR5874632_1' || true)"
gz2="$(_compress_if_exists 'SRR5874632_2' || true)"
gzs="$(_compress_if_exists 'SRR5874632' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TDP_SS4in3B_CLIP_AS47_S101_L007_R1_001.C01_TDP_SS4in3B_CLIP_AS47_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TDP_SS4in3B_CLIP_AS47_S101_L007_R2_001.C01_TDP_SS4in3B_CLIP_AS47_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874633"
gz1="$(_compress_if_exists 'SRR5874633_1' || true)"
gz2="$(_compress_if_exists 'SRR5874633_2' || true)"
gzs="$(_compress_if_exists 'SRR5874633' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TDP_SS4in3B_CLIP_AS47_S101_L007_R1_001.D08fixed_TDP_SS4in3B_CLIP_AS47_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TDP_SS4in3B_CLIP_AS47_S101_L007_R2_001.D08fixed_TDP_SS4in3B_CLIP_AS47_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874634"
gz1="$(_compress_if_exists 'SRR5874634_1' || true)"
gz2="$(_compress_if_exists 'SRR5874634_2' || true)"
gzs="$(_compress_if_exists 'SRR5874634' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TDP_SS4in3B_L000_R1_001.C01_TDP_SS4in3B_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TDP_SS4in3B_L000_R2_001.C01_TDP_SS4in3B_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874635"
gz1="$(_compress_if_exists 'SRR5874635_1' || true)"
gz2="$(_compress_if_exists 'SRR5874635_2' || true)"
gzs="$(_compress_if_exists 'SRR5874635' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TDP_SS4in3B_L000_R1_001.D08fixed_TDP_SS4in3B_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TDP_SS4in3B_L000_R2_001.D08fixed_TDP_SS4in3B_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874636"
gz1="$(_compress_if_exists 'SRR5874636_1' || true)"
gz2="$(_compress_if_exists 'SRR5874636_2' || true)"
gzs="$(_compress_if_exists 'SRR5874636' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TDP_SSIII_L000_R1_001.C01_TDP_SSIII_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TDP_SSIII_L000_R2_001.C01_TDP_SSIII_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874637"
gz1="$(_compress_if_exists 'SRR5874637_1' || true)"
gz2="$(_compress_if_exists 'SRR5874637_2' || true)"
gzs="$(_compress_if_exists 'SRR5874637' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TDP_SSIII_L000_R1_001.D08fixed_TDP_SSIII_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TDP_SSIII_L000_R2_001.D08fixed_TDP_SSIII_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874638"
gz1="$(_compress_if_exists 'SRR5874638_1' || true)"
gz2="$(_compress_if_exists 'SRR5874638_2' || true)"
gzs="$(_compress_if_exists 'SRR5874638' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TDP_TGIRT_L000_R1_001.C01_TDP_TGIRT_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TDP_TGIRT_L000_R2_001.C01_TDP_TGIRT_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874639"
gz1="$(_compress_if_exists 'SRR5874639_1' || true)"
gz2="$(_compress_if_exists 'SRR5874639_2' || true)"
gzs="$(_compress_if_exists 'SRR5874639' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TDP_TGIRT_L000_R1_001.D08fixed_TDP_TGIRT_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TDP_TGIRT_L000_R2_001.D08fixed_TDP_TGIRT_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874640"
gz1="$(_compress_if_exists 'SRR5874640_1' || true)"
gz2="$(_compress_if_exists 'SRR5874640_2' || true)"
gzs="$(_compress_if_exists 'SRR5874640' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_TDP_AFFSC_CLIP_S107_L008_R1_001.C01_AS_TDP_AFFSC_CLIP_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_TDP_AFFSC_CLIP_S107_L008_R2_001.C01_AS_TDP_AFFSC_CLIP_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874641"
gz1="$(_compress_if_exists 'SRR5874641_1' || true)"
gz2="$(_compress_if_exists 'SRR5874641_2' || true)"
gzs="$(_compress_if_exists 'SRR5874641' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_TDP_AFFSC_CLIP_S107_L008_R1_001.D08fixed_AS_TDP_AFFSC_CLIP_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_TDP_AFFSC_CLIP_S107_L008_R2_001.D08fixed_AS_TDP_AFFSC_CLIP_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874642"
gz1="$(_compress_if_exists 'SRR5874642_1' || true)"
gz2="$(_compress_if_exists 'SRR5874642_2' || true)"
gzs="$(_compress_if_exists 'SRR5874642' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_TDP_SS4_CLIP_S115_L008_R1_001.C01_AS_TDP_SS4_CLIP_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_TDP_SS4_CLIP_S115_L008_R2_001.C01_AS_TDP_SS4_CLIP_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874643"
gz1="$(_compress_if_exists 'SRR5874643_1' || true)"
gz2="$(_compress_if_exists 'SRR5874643_2' || true)"
gzs="$(_compress_if_exists 'SRR5874643' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_TDP_SS4_CLIP_S115_L008_R1_001.D08fixed_AS_TDP_SS4_CLIP_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_TDP_SS4_CLIP_S115_L008_R2_001.D08fixed_AS_TDP_SS4_CLIP_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874644"
gz1="$(_compress_if_exists 'SRR5874644_1' || true)"
gz2="$(_compress_if_exists 'SRR5874644_2' || true)"
gzs="$(_compress_if_exists 'SRR5874644' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_TDP_SS4_MN_CLIP_S119_L008_R1_001.C01_AS_TDP_SS4_MN_CLIP_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_TDP_SS4_MN_CLIP_S119_L008_R2_001.C01_AS_TDP_SS4_MN_CLIP_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874645"
gz1="$(_compress_if_exists 'SRR5874645_1' || true)"
gz2="$(_compress_if_exists 'SRR5874645_2' || true)"
gzs="$(_compress_if_exists 'SRR5874645' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_TDP_SS4_MN_CLIP_S119_L008_R1_001.D08fixed_AS_TDP_SS4_MN_CLIP_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_TDP_SS4_MN_CLIP_S119_L008_R2_001.D08fixed_AS_TDP_SS4_MN_CLIP_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874646"
gz1="$(_compress_if_exists 'SRR5874646_1' || true)"
gz2="$(_compress_if_exists 'SRR5874646_2' || true)"
gzs="$(_compress_if_exists 'SRR5874646' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_TDP_SSIII_CLIP_S111_L008_R1_001.C01_AS_TDP_SSIII_CLIP_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_TDP_SSIII_CLIP_S111_L008_R2_001.C01_AS_TDP_SSIII_CLIP_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874647"
gz1="$(_compress_if_exists 'SRR5874647_1' || true)"
gz2="$(_compress_if_exists 'SRR5874647_2' || true)"
gzs="$(_compress_if_exists 'SRR5874647' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_TDP_SSIII_CLIP_S111_L008_R1_001.D08fixed_AS_TDP_SSIII_CLIP_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_TDP_SSIII_CLIP_S111_L008_R2_001.D08fixed_AS_TDP_SSIII_CLIP_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874648"
gz1="$(_compress_if_exists 'SRR5874648_1' || true)"
gz2="$(_compress_if_exists 'SRR5874648_2' || true)"
gzs="$(_compress_if_exists 'SRR5874648' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_TDP_TGIRT_CLIP_S123_L008_R1_001.C01_AS_TDP_TGIRT_CLIP_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_TDP_TGIRT_CLIP_S123_L008_R2_001.C01_AS_TDP_TGIRT_CLIP_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874649"
gz1="$(_compress_if_exists 'SRR5874649_1' || true)"
gz2="$(_compress_if_exists 'SRR5874649_2' || true)"
gzs="$(_compress_if_exists 'SRR5874649' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_TDP_TGIRT_CLIP_S123_L008_R1_001.D08fixed_AS_TDP_TGIRT_CLIP_TARDBP.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_TDP_TGIRT_CLIP_S123_L008_R2_001.D08fixed_AS_TDP_TGIRT_CLIP_TARDBP.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874650"
gz1="$(_compress_if_exists 'SRR5874650_1' || true)"
gz2="$(_compress_if_exists 'SRR5874650_2' || true)"
gzs="$(_compress_if_exists 'SRR5874650' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TDP_SS4in3B_IN_AS48_S102_L007_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TDP_SS4in3B_IN_AS48_S102_L007_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874651"
gz1="$(_compress_if_exists 'SRR5874651_1' || true)"
gz2="$(_compress_if_exists 'SRR5874651_2' || true)"
gzs="$(_compress_if_exists 'SRR5874651' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_TDP_AFFSC_IN_S108_L008_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_TDP_AFFSC_IN_S108_L008_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874652"
gz1="$(_compress_if_exists 'SRR5874652_1' || true)"
gz2="$(_compress_if_exists 'SRR5874652_2' || true)"
gzs="$(_compress_if_exists 'SRR5874652' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_TDP_SS4_IN_S116_L008_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_TDP_SS4_IN_S116_L008_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874653"
gz1="$(_compress_if_exists 'SRR5874653_1' || true)"
gz2="$(_compress_if_exists 'SRR5874653_2' || true)"
gzs="$(_compress_if_exists 'SRR5874653' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_TDP_SS4_MN_IN_S120_L008_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_TDP_SS4_MN_IN_S120_L008_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874654"
gz1="$(_compress_if_exists 'SRR5874654_1' || true)"
gz2="$(_compress_if_exists 'SRR5874654_2' || true)"
gzs="$(_compress_if_exists 'SRR5874654' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_TDP_SSIII_IN_S112_L008_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_TDP_SSIII_IN_S112_L008_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874655"
gz1="$(_compress_if_exists 'SRR5874655_1' || true)"
gz2="$(_compress_if_exists 'SRR5874655_2' || true)"
gzs="$(_compress_if_exists 'SRR5874655' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "AS_TDP_TGIRT_IN_S124_L008_R1_001.unassigned.randomer.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "AS_TDP_TGIRT_IN_S124_L008_R2_001.unassigned.randomer.fastq.gz"
fi

fasterq-dump --split-files "SRR5874656"
gz1="$(_compress_if_exists 'SRR5874656_1' || true)"
gz2="$(_compress_if_exists 'SRR5874656_2' || true)"
gzs="$(_compress_if_exists 'SRR5874656' || true)"


# Option B: Direct download (larger .sra files)
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874555/SRR5874555"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874556/SRR5874556"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874557/SRR5874557"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874558/SRR5874558"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874559/SRR5874559"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874560/SRR5874560"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874561/SRR5874561"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874562/SRR5874562"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874563/SRR5874563"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874564/SRR5874564"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874565/SRR5874565"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874566/SRR5874566"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874567/SRR5874567"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874568/SRR5874568"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874569/SRR5874569"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874570/SRR5874570"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874571/SRR5874571"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874572/SRR5874572"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874573/SRR5874573"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874574/SRR5874574"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874575/SRR5874575"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874576/SRR5874576"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874577/SRR5874577"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874578/SRR5874578"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874579/SRR5874579"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874580/SRR5874580"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874581/SRR5874581"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874582/SRR5874582"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874583/SRR5874583"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874584/SRR5874584"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874585/SRR5874585"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874586/SRR5874586"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874587/SRR5874587"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874588/SRR5874588"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874589/SRR5874589"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874590/SRR5874590"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874591/SRR5874591"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874592/SRR5874592"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874593/SRR5874593"
curl -L -O -C - "https://sra-pub-src-1.s3.amazonaws.com/SRR5874594/AS_SSc3_S74_L004_R1_001.X2A_AS_SSc3_RBFOX2.randomer.fastq.gz.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874595/SRR5874595"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874596/SRR5874596"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874597/SRR5874597"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874598/SRR5874598"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874599/SRR5874599"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874600/SRR5874600"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874601/SRR5874601"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874602/SRR5874602"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874603/SRR5874603"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874604/SRR5874604"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874605/SRR5874605"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874606/SRR5874606"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874607/SRR5874607"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874608/SRR5874608"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874609/SRR5874609"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874610/SRR5874610"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874611/SRR5874611"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874612/SRR5874612"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874613/SRR5874613"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874614/SRR5874614"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874615/SRR5874615"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874616/SRR5874616"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874617/SRR5874617"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874618/SRR5874618"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874619/SRR5874619"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874620/SRR5874620"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874621/SRR5874621"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874622/SRR5874622"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874623/SRR5874623"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874624/SRR5874624"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874625/SRR5874625"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874626/SRR5874626"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874627/SRR5874627"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874628/SRR5874628"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874629/SRR5874629"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874630/SRR5874630"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874631/SRR5874631"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874632/SRR5874632"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874633/SRR5874633"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874634/SRR5874634"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874635/SRR5874635"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874636/SRR5874636"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874637/SRR5874637"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874638/SRR5874638"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874639/SRR5874639"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874640/SRR5874640"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874641/SRR5874641"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874642/SRR5874642"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874643/SRR5874643"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874644/SRR5874644"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874645/SRR5874645"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874646/SRR5874646"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874647/SRR5874647"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874648/SRR5874648"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874649/SRR5874649"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874650/SRR5874650"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874651/SRR5874651"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874652/SRR5874652"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874653/SRR5874653"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874654/SRR5874654"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874655/SRR5874655"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874656/SRR5874656"

# --- Additional data files ---
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874557/SRR5874557"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874561/SRR5874561"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874564/SRR5874564"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874566/SRR5874566"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874569/SRR5874569"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874572/SRR5874572"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874575/SRR5874575"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874578/SRR5874578"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874581/SRR5874581"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874555/SRR5874555"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874556/SRR5874556"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874558/SRR5874558"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874560/SRR5874560"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874562/SRR5874562"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874563/SRR5874563"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874559/SRR5874559"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874565/SRR5874565"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874567/SRR5874567"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874568/SRR5874568"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874570/SRR5874570"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874571/SRR5874571"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874573/SRR5874573"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874574/SRR5874574"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874576/SRR5874576"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874577/SRR5874577"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874579/SRR5874579"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874580/SRR5874580"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874586/SRR5874586"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874587/SRR5874587"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874582/SRR5874582"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874583/SRR5874583"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874620/SRR5874620"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874598/SRR5874598"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874599/SRR5874599"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874621/SRR5874621"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874608/SRR5874608"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874609/SRR5874609"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874622/SRR5874622"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874596/SRR5874596"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874597/SRR5874597"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874623/SRR5874623"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874614/SRR5874614"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874615/SRR5874615"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874624/SRR5874624"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874588/SRR5874588"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874589/SRR5874589"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874610/SRR5874610"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874611/SRR5874611"
curl -L -O -C - "https://sra-pub-src-1.s3.amazonaws.com/SRR5874594/AS_SSc3_S74_L004_R1_001.X2A_AS_SSc3_RBFOX2.randomer.fastq.gz.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874595/SRR5874595"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874600/SRR5874600"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874601/SRR5874601"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874590/SRR5874590"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874591/SRR5874591"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874640/SRR5874640"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874641/SRR5874641"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874651/SRR5874651"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874642/SRR5874642"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874643/SRR5874643"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874652/SRR5874652"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874644/SRR5874644"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874645/SRR5874645"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874653/SRR5874653"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874646/SRR5874646"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874647/SRR5874647"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874654/SRR5874654"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874648/SRR5874648"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874649/SRR5874649"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874655/SRR5874655"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874616/SRR5874616"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874617/SRR5874617"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874584/SRR5874584"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874585/SRR5874585"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874604/SRR5874604"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874605/SRR5874605"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874625/SRR5874625"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874606/SRR5874606"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874607/SRR5874607"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874602/SRR5874602"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874603/SRR5874603"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874612/SRR5874612"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874613/SRR5874613"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874592/SRR5874592"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874593/SRR5874593"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874618/SRR5874618"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874619/SRR5874619"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874656/SRR5874656"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874626/SRR5874626"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874627/SRR5874627"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874632/SRR5874632"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874633/SRR5874633"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874650/SRR5874650"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874634/SRR5874634"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874635/SRR5874635"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874630/SRR5874630"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874631/SRR5874631"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874628/SRR5874628"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874629/SRR5874629"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874636/SRR5874636"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874637/SRR5874637"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874638/SRR5874638"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5874639/SRR5874639"

echo "Download complete. Files saved to $OUTDIR"