GSE78961
GSE GEOModeling the Neuropathology of Tuberous Sclerosis with Human Stem Cells Reveals a Role for Inflammation and Angiogenic Growth Factors
Organism:
Homo sapiens
Platform:
GPL16791
Samples:
72
Experiment Types:
Expression profiling by high throughput sequencing
Submitted:
Mar 07 2016
Last Updated:
Nov 08 2020
Status:
Public on Jul 25 2016
Contact:
Jitao David,,Zhang (F. Hoffmann-La Roche)
Relations
SuperSeries of: GSE78959
SuperSeries of: GSE78960
BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA314504
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall Design
Refer to individual Series
Analysis (3 steps)
View Data Processing
Processing steps for GSE78961
- Linker tags were removed from RNA sequencing and ribosome profiling reads by the FASTX Toolkit, v0.0.13 (http://hannonlab.cshl.edu/fastx_toolkit/)
- All reads that mapped to rRNAs, tRNAs or mitochondrial rRNAs were removed, and the remaining reads were mapped to RefSeq (v38) by TopHat v2.0.13.
- Finally all read counts that mapped uniquely to genes were extracted for expression analysis with the help of samtools, v1.1.
GEO Samples (72)
GSM2082509
GSM2082510
GSM2082511
GSM2082512
GSM2082513
GSM2082514
GSM2082515
GSM2082516
GSM2082517
GSM2082518
GSM2082519
GSM2082520
GSM2082521
GSM2082522
GSM2082523
GSM2082524
GSM2082525
GSM2082526
GSM2082527
GSM2082528
GSM2082529
GSM2082530
GSM2082531
GSM2082532
GSM2082533
GSM2082534
GSM2082535
GSM2082536
GSM2082537
GSM2082538
GSM2082539
GSM2082540
GSM2082541
GSM2082542
GSM2082543
GSM2082544
GSM2082545
GSM2082546
GSM2082547
GSM2082548
GSM2082549
GSM2082550
GSM2082551
GSM2082552
GSM2082553
GSM2082554
GSM2082555
GSM2082556
GSM2082557
GSM2082558
GSM2082559
GSM2082560
GSM2082561
GSM2082562
GSM2082563
GSM2082564
GSM2082565
GSM2082566
GSM2082567
GSM2082568
GSM2082569
GSM2082570
GSM2082571
GSM2082572
GSM2082573
GSM2082574
GSM2082575
GSM2082576
GSM2082577
GSM2082578
GSM2082579
GSM2082580
Dataset Citations (1)
Genomic analysis of the molecular neuropathology of tuberous sclerosis using a human stem cell model.
PMID 27655340
· 2016
· Genome medicine
Nils Grabole, Jitao David Zhang, Stefan Aigner, Nadine Ruderisch, Veronica Costa, Felix C Weber, Michel Theron, Nikolaos Berntenis, Olivia Spleiss, Martin Ebeling, Gene W Yeo, Ravi Jagasia, Anna Kiialainen