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GSE34995

GSE GEO
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Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins (RNA-Seq)

Organism: Homo sapiens
Platform: GPL9115
Samples: 31
Experiment Types:
Expression profiling by high throughput sequencing
Submitted: Jan 10 2012
Last Updated: May 15 2019
Status: Public on Feb 20 2012
Contact: Gene,,Yeo (UCSD)

Relations

SubSeries of: GSE34996 SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP010280 BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA156297

Summary

Understanding how RNA binding proteins control the splicing code is fundamental to human biology and disease. Here we present a comprehensive study to elucidate how heterogeneous nuclear ribonucleoparticle (hnRNP) proteins, among the most abundant RNA binding proteins, coordinate to regulate alternative pre-mRNA splicing (AS) in human cells. Using splicing-sensitive microarrays, cross-linking and immunoprecipitation coupled with high-throughput sequencing, and cDNA sequencing, we find that more than half of all AS events are regulated by multiple hnRNP proteins, and that some combinations of hnRNP proteins exhibit significant synergy, whereas others act antagonistically. Our analyses reveal position-dependent RNA splicing maps, in vivo consensus binding sites, a surprising level of cross- and auto-regulation among hnRNP proteins, and the coordinated regulation by hnRNP proteins of dozens of other RNA binding proteins and genes associated with cancer. Our findings define an unprecedented degree of complexity and compensatory relationships among hnRNP proteins and their splicing targets that likely confer robustness to cells.

Overall Design

RNAseq for control, hnRNP A1, hnRNP A2/B1, hnRNP H1, hnRNP F, hnRNP M, and hnRNP U siRNA treated human 293T cells

Analysis (2 steps)

View Data Processing
Processing steps for GSE34995
  1. Strand-specific RNA-seq reads from control siRNA treatment, and each hnRNP depletion experiment were processed as previously described (Polymenidou et al., 2011).
  2. An average of 70% of reads mapped uniquely to our gene structure database, using Bowtie (version 0.12.2, with parameters –l 20 –m 5 –k 5 ––best ––un –– max –q).

Supplementary Files (1)

GSE34995_RAW.tar Download
GEO Samples (31)
GSM859993 GSM859994 GSM859995 GSM859996 GSM859998 GSM859999 GSM860001 GSM860004 GSM860007 GSM860009 GSM860011 GSM860012 GSM860013 GSM860014 GSM860015 GSM860016 GSM860017 GSM860018 GSM860019 GSM860020 GSM860021 GSM860022 GSM860023 GSM860024 GSM860025 GSM860026 GSM860027 GSM860028 GSM860029 GSM860030 GSM860031

Dataset Citations (1)

Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins.
PMID 22574288 · 2012 · Cell reports
Stephanie C Huelga, Anthony Q Vu, Justin D Arnold, Tiffany Y Liang, Patrick P Liu, Bernice Y Yan, John Paul Donohue, Lily Shiue, Shawn Hoon, Sydney Brenner, Manuel Ares, Gene W Yeo

SRA Experiments (31) and Runs (31)

Total: 22660 MB
SRX115515 SRP010280 RNA-Seq SINGLE
GSM859993: hnRNPA1 293T RNAseq KD1a
Sample: SRS285637
BioProject: PRJNA156297
BioSample: SAMN00771634
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPA1 siRNAs
cell line: 293T
read length: 36
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398210 11347310 408503160 266.87 hnRNPA1_293T_RNAseq_KD1a_sequence.txt, SRR398210, SRR398210.sralite SRA
SRX115516 SRP010280 RNA-Seq SINGLE
GSM859994: hnRNPA1 293T RNAseq KD2a
Sample: SRS285638
BioProject: PRJNA156297
BioSample: SAMN00771635
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPA1 siRNAs
cell line: 293T
read length: 36
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398211 13368747 481274892 315.55 hnRNPA1_293T_RNAseq_KD2a_sequence.txt, SRR398211, SRR398211.sralite SRA
SRX115517 SRP010280 RNA-Seq SINGLE
GSM859995: hnRNPA1 293T RNAseq KD3a
Sample: SRS285639
BioProject: PRJNA156297
BioSample: SAMN00771636
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPA1 siRNAs
cell line: 293T
read length: 42
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398212 15561400 653578800 258.72 hnRNPA1_293T_RNAseq_KD3a_sequence.txt, SRR398212, SRR398212.sralite SRA
SRX115518 SRP010280 RNA-Seq SINGLE
GSM859996: hnRNPA1 293T RNAseq KD3b
Sample: SRS285640
BioProject: PRJNA156297
BioSample: SAMN00771637
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPA1 siRNAs
cell line: 293T
read length: 76
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398213 28489741 2165220316 1196.74 hnRNPA1_293T_RNAseq_KD3b_sequence.txt, SRR398213, SRR398213.sralite SRA
SRX115519 SRP010280 RNA-Seq SINGLE
GSM859998: hnRNPA1 293T RNAseq KD3c
Sample: SRS285641
BioProject: PRJNA156297
BioSample: SAMN00771638
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPA1 siRNAs
cell line: 293T
read length: 50
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398214 28447863 1422393150 760.08 hnRNPA1_293T_RNAseq_KD3c_sequence.txt, SRR398214, SRR398214.sralite SRA
SRX115520 SRP010280 RNA-Seq SINGLE
GSM859999: hnRNPA1 293T RNAseq KD3d
Sample: SRS285642
BioProject: PRJNA156297
BioSample: SAMN00771639
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPA1 siRNAs
cell line: 293T
read length: 50
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398215 28821723 1441086150 769.15 hnRNPA1_293T_RNAseq_KD3d_sequence.txt, SRR398215, SRR398215.sralite SRA
SRX115521 SRP010280 RNA-Seq SINGLE
GSM860001: hnRNPA2B1 293T RNAseq KD1a
Sample: SRS285643
BioProject: PRJNA156297
BioSample: SAMN00771640
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPA2B1 siRNAs
cell line: 293T
read length: 70
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398216 14825334 1037773380 629.86 hnRNPA2B1_293T_RNAseq_KD1a_sequence.txt, SRR398216, SRR398216.sralite SRA
SRX115522 SRP010280 RNA-Seq SINGLE
GSM860004: hnRNPA2B1 293T RNAseq KD2a
Sample: SRS285644
BioProject: PRJNA156297
BioSample: SAMN00771641
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPA2B1 siRNAs
cell line: 293T
read length: 70
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398217 11055019 773851330 447.58 hnRNPA2B1_293T_RNAseq_KD2a_sequence.txt, SRR398217, SRR398217.sralite SRA
SRX115523 SRP010280 RNA-Seq SINGLE
GSM860007: hnRNPF 293T RNAseq KD1a
Sample: SRS285645
BioProject: PRJNA156297
BioSample: SAMN00771642
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPF siRNA
cell line: 293T
read length: 50
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398218 20201080 1010054000 446.94 hnRNPF_293T_RNAseq_KD1a_sequence.txt, SRR398218, SRR398218.sralite SRA
SRX115524 SRP010280 RNA-Seq SINGLE
GSM860009: hnRNPF 293T RNAseq KD1b
Sample: SRS285646
BioProject: PRJNA156297
BioSample: SAMN00771643
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPF siRNA
cell line: 293T
read length: 50
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398219 26901083 1345054150 720.11 hnRNPF_293T_RNAseq_KD1b_sequence.txt, SRR398219, SRR398219.sralite SRA
SRX115525 SRP010280 RNA-Seq SINGLE
GSM860011: hnRNPF 293T RNAseq KD2a
Sample: SRS285647
BioProject: PRJNA156297
BioSample: SAMN00771644
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPF siRNA
cell line: 293T
read length: 50
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398220 23952003 1197600150 670.72 hnRNPF_293T_RNAseq_KD2a_sequence.txt, SRR398220, SRR398220.sralite SRA
SRX115526 SRP010280 RNA-Seq SINGLE
GSM860012: hnRNPF 293T RNAseq KD2b
Sample: SRS285648
BioProject: PRJNA156297
BioSample: SAMN00771645
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPF siRNA
cell line: 293T
read length: 50
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398221 29162696 1458134800 779.53 hnRNPF_293T_RNAseq_KD2b_sequence.txt, SRR398221, SRR398221.sralite SRA
SRX115527 SRP010280 RNA-Seq SINGLE
GSM860013: hnRNPF 293T RNAseq KD2c
Sample: SRS285649
BioProject: PRJNA156297
BioSample: SAMN00771646
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPF siRNA
cell line: 293T
read length: 50
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398222 28946624 1447331200 767.95 hnRNPF_293T_RNAseq_KD2c_sequence.txt, SRR398222, SRR398222.sralite SRA
SRX115528 SRP010280 RNA-Seq SINGLE
GSM860014: hnRNPH1 293T RNAseq KD1a
Sample: SRS285650
BioProject: PRJNA156297
BioSample: SAMN00771647
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPH1 siRNAs
cell line: 293T
read length: 70
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398223 16876308 1181341560 688.77 hnRNPH1_293T_RNAseq_KD1a_sequence.txt, SRR398223, SRR398223.sralite SRA
SRX115529 SRP010280 RNA-Seq SINGLE
GSM860015: hnRNPH1 293T RNAseq KD2a
Sample: SRS285651
BioProject: PRJNA156297
BioSample: SAMN00771648
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPH1 siRNAs
cell line: 293T
read length: 70
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398224 27222006 1905540420 1186.52 hnRNPH1_293T_RNAseq_KD2a_sequence.txt, SRR398224, SRR398224.sralite SRA
SRX115530 SRP010280 RNA-Seq SINGLE
GSM860016: hnRNPM 293T RNAseq KD1a
Sample: SRS285652
BioProject: PRJNA156297
BioSample: SAMN00771649
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPM siRNAs
cell line: 293T
read length: 36
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398225 14126599 508557564 340.18 hnRNPM_293T_RNAseq_KD1a_sequence.txt, SRR398225, SRR398225.sralite SRA
SRX115531 SRP010280 RNA-Seq SINGLE
GSM860017: hnRNPM 293T RNAseq KD1b
Sample: SRS285653
BioProject: PRJNA156297
BioSample: SAMN00771650
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPM siRNAs
cell line: 293T
read length: 76
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398226 28234868 2145849968 1173.42 hnRNPM_293T_RNAseq_KD1b_sequence.txt, SRR398226.sralite SRA
SRX115532 SRP010280 RNA-Seq SINGLE
GSM860018: hnRNPM 293T RNAseq KD1c
Sample: SRS285654
BioProject: PRJNA156297
BioSample: SAMN00771651
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPM siRNAs
cell line: 293T
read length: 50
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398227 26461030 1323051500 688.64 hnRNPM_293T_RNAseq_KD1c_sequence.txt, SRR398227, SRR398227.sralite SRA
SRX115533 SRP010280 RNA-Seq SINGLE
GSM860019: hnRNPM 293T RNAseq KD1d
Sample: SRS285655
BioProject: PRJNA156297
BioSample: SAMN00771652
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPM siRNAs
cell line: 293T
read length: 50
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398228 26345404 1317270200 684.92 hnRNPM_293T_RNAseq_KD1d_sequence.txt, SRR398228, SRR398228.sralite SRA
SRX115534 SRP010280 RNA-Seq SINGLE
GSM860020: hnRNPM 293T RNAseq KD2a
Sample: SRS285656
BioProject: PRJNA156297
BioSample: SAMN00771653
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPM siRNAs
cell line: 293T
read length: 36
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398229 13169724 474110064 324.68 hnRNPM_293T_RNAseq_KD2a_sequence.txt, SRR398229, SRR398229.sralite SRA
SRX115535 SRP010280 RNA-Seq SINGLE
GSM860021: hnRNPM 293T RNAseq KD2b
Sample: SRS285657
BioProject: PRJNA156297
BioSample: SAMN00771654
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPM siRNAs
cell line: 293T
read length: 76
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398230 6426395 488406020 320.61 hnRNPM_293T_RNAseq_KD2b_sequence.txt, SRR398230, SRR398230.sralite SRA
SRX115536 SRP010280 RNA-Seq SINGLE
GSM860022: hnRNPU 293T RNAseq KD1a
Sample: SRS285658
BioProject: PRJNA156297
BioSample: SAMN00771655
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPU siRNAs
cell line: 293T
read length: 50
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398231 20545025 1027251250 449.76 hnRNPU_293T_RNAseq_KD1a_sequence.txt, SRR398231, SRR398231.sralite SRA
SRX115537 SRP010280 RNA-Seq SINGLE
GSM860023: hnRNPU 293T RNAseq KD1b
Sample: SRS285659
BioProject: PRJNA156297
BioSample: SAMN00771656
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPU siRNAs
cell line: 293T
read length: 76
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398232 28384045 2157187420 1201.61 hnRNPU_293T_RNAseq_KD1b_sequence.txt, SRR398232, SRR398232.sralite SRA
SRX115538 SRP010280 RNA-Seq SINGLE
GSM860024: hnRNPU 293T RNAseq KD2a
Sample: SRS285660
BioProject: PRJNA156297
BioSample: SAMN00771657
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPU siRNAs
cell line: 293T
read length: 50
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398233 28463412 1423170600 762.16 hnRNPU_293T_RNAseq_KD2a_sequence.txt, SRR398233, SRR398233.sralite SRA
SRX115539 SRP010280 RNA-Seq SINGLE
GSM860025: hnRNPU 293T RNAseq KD2b
Sample: SRS285661
BioProject: PRJNA156297
BioSample: SAMN00771658
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: hnRNPU siRNAs
cell line: 293T
read length: 50
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398234 116330730 5816536500 3278.67 hnRNPU_293T_RNAseq_KD2b_sequence.txt, SRR398234, SRR398234.sralite SRA
SRX115540 SRP010280 RNA-Seq SINGLE
GSM860026: control 293T RNAseq 1
Sample: SRS285662
BioProject: PRJNA156297
BioSample: SAMN00771659
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: Control siRNA
cell line: 293T
read length: 50
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398235 22115682 1105784100 485.33 control_293T_RNAseq_1_sequence.txt, SRR398235, SRR398235.sralite SRA
SRX115541 SRP010280 RNA-Seq SINGLE
GSM860027: control 293T RNAseq 2
Sample: SRS285663
BioProject: PRJNA156297
BioSample: SAMN00771660
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: Control siRNA
cell line: 293T
read length: 50
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398236 13005200 650260000 397.31 control_293T_RNAseq_2_sequence.txt, SRR398236, SRR398236.sralite SRA
SRX115542 SRP010280 RNA-Seq SINGLE
GSM860028: control 293T RNAseq 3
Sample: SRS285664
BioProject: PRJNA156297
BioSample: SAMN00771661
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: Control siRNA
cell line: 293T
read length: 70
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398237 13940769 975853830 557.74 control_293T_RNAseq_3_sequence.txt, SRR398237, SRR398237.sralite SRA
SRX115543 SRP010280 RNA-Seq SINGLE
GSM860029: control 293T RNAseq 4
Sample: SRS285665
BioProject: PRJNA156297
BioSample: SAMN00771662
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: Control siRNA
cell line: 293T
read length: 70
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398238 13577784 950444880 547.72 control_293T_RNAseq_4_sequence.txt, SRR398238, SRR398238.sralite SRA
SRX115544 SRP010280 RNA-Seq SINGLE
GSM860030: control 293T RNAseq 5
Sample: SRS285666
BioProject: PRJNA156297
BioSample: SAMN00771663
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: Control siRNA
cell line: 293T
read length: 50
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398239 28467294 1423364700 751.52 control_293T_RNAseq_5_sequence.txt, SRR398239, SRR398239.sralite SRA
SRX115545 SRP010280 RNA-Seq SINGLE
GSM860031: control 293T RNAseq 6
Sample: SRS285667
BioProject: PRJNA156297
BioSample: SAMN00771664
Platform: ILLUMINA
Instrument: Illumina Genome Analyzer II
Organism: Homo sapiens
Sample attributes
source_name: human 293T cells
treatment: Control siRNA
cell line: 293T
read length: 50
Original files (1)
human 293T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR398240 29546883 1477344150 790.21 control_293T_RNAseq_6_sequence.txt, SRR398240, SRR398240.sralite SRA

Linked Publications (1)

Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins.
Cell reports · 2012

Data Files (36)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— control_293T_RNAseq_1_sequence.txt RNA-Seq 485.3 MB link
— control_293T_RNAseq_2_sequence.txt RNA-Seq 397.3 MB link
— control_293T_RNAseq_3_sequence.txt RNA-Seq 557.7 MB link
— control_293T_RNAseq_4_sequence.txt RNA-Seq 547.7 MB link
— control_293T_RNAseq_4_sequence.txt RNA-Seq 547.7 MB link
— control_293T_RNAseq_5_sequence.txt RNA-Seq 751.5 MB link
— control_293T_RNAseq_6_sequence.txt RNA-Seq 790.2 MB link
— hnRNPA1_293T_RNAseq_KD1a_sequence.txt RNA-Seq 266.9 MB link
— hnRNPA1_293T_RNAseq_KD2a_sequence.txt RNA-Seq 315.5 MB link
— hnRNPA1_293T_RNAseq_KD3a_sequence.txt RNA-Seq 258.7 MB link
— hnRNPA1_293T_RNAseq_KD3b_sequence.txt RNA-Seq 1.2 GB link
— hnRNPA1_293T_RNAseq_KD3c_sequence.txt RNA-Seq 760.1 MB link
— hnRNPA1_293T_RNAseq_KD3d_sequence.txt RNA-Seq 769.1 MB link
— hnRNPA2B1_293T_RNAseq_KD1a_sequence.txt RNA-Seq 629.9 MB link
— hnRNPA2B1_293T_RNAseq_KD2a_sequence.txt RNA-Seq 447.6 MB link
— hnRNPF_293T_RNAseq_KD1a_sequence.txt RNA-Seq 446.9 MB link
— hnRNPF_293T_RNAseq_KD1b_sequence.txt RNA-Seq 720.1 MB link
— hnRNPF_293T_RNAseq_KD2a_sequence.txt RNA-Seq 670.7 MB link
— hnRNPF_293T_RNAseq_KD2b_sequence.txt RNA-Seq 779.5 MB link
— hnRNPF_293T_RNAseq_KD2c_sequence.txt RNA-Seq 767.9 MB link
— hnRNPH1_293T_RNAseq_KD1a_sequence.txt RNA-Seq 688.8 MB link
— hnRNPH1_293T_RNAseq_KD2a_sequence.txt RNA-Seq 1.2 GB link
— hnRNPM_293T_RNAseq_KD1a_sequence.txt RNA-Seq 340.2 MB link
— hnRNPM_293T_RNAseq_KD1b_sequence.txt RNA-Seq 1.1 GB link
— hnRNPM_293T_RNAseq_KD1c_sequence.txt RNA-Seq 688.6 MB link
— hnRNPM_293T_RNAseq_KD1d_sequence.txt RNA-Seq 684.9 MB link
— hnRNPM_293T_RNAseq_KD2a_sequence.txt RNA-Seq 324.7 MB link
— hnRNPM_293T_RNAseq_KD2b_sequence.txt RNA-Seq 320.6 MB link
— hnRNPU_293T_RNAseq_KD1a_sequence.txt RNA-Seq 449.8 MB link
— hnRNPU_293T_RNAseq_KD1b_sequence.txt RNA-Seq 1.2 GB link
— hnRNPU_293T_RNAseq_KD2a_sequence.txt RNA-Seq 762.2 MB link
— hnRNPU_293T_RNAseq_KD2b_sequence.txt RNA-Seq 3.2 GB link
— SRR398215 RNA-Seq 769.1 MB link
— SRR398224 RNA-Seq 1.2 GB link
— SRR398230 RNA-Seq 320.6 MB link
— SRR398234 RNA-Seq 3.2 GB link