← All datasets

GSE133744

GSE GEO
View on GEO Export SRA CSV

Expression Profile Analysis of Rat Motoneurons During Myelination

Organism: Rattus norvegicus
Platform: GPL1355
Samples: 8
Experiment Types:
Expression profiling by array
Submitted: Jul 02 2019
Last Updated: Oct 08 2020
Status: Public on Jul 09 2020
Contact: Bilal,Ersen,Kerman (Istanbul Medipol University)

Relations

BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA552365

Summary

Disorders that disrupt myelin during development or in adulthood, such as multiple sclerosis and peripheral neuropathies, lead to severe pathologies, illustrating myelin’s crucial role in normal neural functioning. However, although our understanding of Schwann cell and oligodendrocyte biology is increasing, the signals that emanate from axons and regulate myelination remain largely unknown. To identify the core components of the myelination process, we adopted a microarray analysis approach combined with laser capture microdissection of spinal motoneurons (MNs) during the myelinogenic phase of development.

Overall Design

We isolated single MNs by LCM from the lumbar spinal cord of 1-day-old (during myelination) and 21-day-old (after completion of myelination) Wistar albino rats. 4 separate rat litters were used in the experiment, with animals from each litter divided into P1 and P21 experimental groups. This design resulted in four biological replicates for each age that were processed independently for microarray analysis using Affymetrix RAE230 2.0 genome arrays.

Analysis (1 step)

View Data Processing
Processing steps for GSE133744
  1. Analysis and normalization were performed using two methods: dChip 1.3 (Li and Wong, 2001) and Drop Method (Aimone and Gage, 2004) software packages.

Supplementary Files (1)

GSE133744_RAW.tar Download
GEO Samples (8)

Dataset Citations (1)

Motoneuron expression profiling identifies an association between an axonal splice variant of HDGF-related protein 3 and peripheral myelination.
PMID 32647008 · 2020 · The Journal of biological chemistry
Bilal Ersen Kerman, Stéphane Genoud, Burcu Kurt Vatandaslar, Ahmet Murat Denli, Shereen Georges Ghosh, Xiangdong Xu, Gene W Yeo, James Bradley Aimone, Fred H Gage

Linked Publications (1)