#!/usr/bin/env bash
# Bulk download script for GSE157467
# Generated from Yeo Lab Publications Database
# Total files: 268

OUTDIR="GSE157467"
mkdir -p "$OUTDIR"
cd "$OUTDIR"

# --- GEO supplementary files ---
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157467/suppl/GSE157467_G3BP_puro_reproducible_annotated_peaks.bed.gz" -O "GSE157467_G3BP_puro_reproducible_annotated_peaks.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157467/suppl/GSE157467_G3BP_ut_reproducible_annotated_peaks.bed.gz" -O "GSE157467_G3BP_ut_reproducible_annotated_peaks.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157467/suppl/GSE157467_RAW.tar" -O "GSE157467_RAW.tar"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157467/suppl/GSE157467_TDP43_puro_reproducible_annotated_peaks.bed.gz" -O "GSE157467_TDP43_puro_reproducible_annotated_peaks.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157467/suppl/GSE157467_TDP43_ut_reproducible_annotated_peaks.bed.gz" -O "GSE157467_TDP43_ut_reproducible_annotated_peaks.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157467/suppl/GSE157467_TIA1_puro_annotated_peaks.bed.gz" -O "GSE157467_TIA1_puro_annotated_peaks.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157467/suppl/GSE157467_TIA1_ut_reproducible_annotated_peaks.bed.gz" -O "GSE157467_TIA1_ut_reproducible_annotated_peaks.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157467/suppl/GSE157467_deseq2_normalized_counts.txt.gz" -O "GSE157467_deseq2_normalized_counts.txt.gz"

# --- SRA run files ---
# Tip: use 'fasterq-dump' from SRA Toolkit for FASTQ conversion
#      with optional renaming to original submitted FASTQ names.
# Set to 1 to rename SRR outputs (e.g. SRR_1.fastq.gz -> sample_R1.fastq.gz)
RENAME_SRA_TO_ORIGINAL=1

_compress_if_exists() {
  local stem="$1"
  if [ -f "${stem}.fastq" ]; then
    gzip -f "${stem}.fastq"
    echo "${stem}.fastq.gz"
    return 0
  fi
  if [ -f "${stem}.fq" ]; then
    gzip -f "${stem}.fq"
    echo "${stem}.fq.gz"
    return 0
  fi
  return 1
}

# Option A: Download via SRA Toolkit (recommended)
fasterq-dump --split-files "SRR12588329"
gz1="$(_compress_if_exists 'SRR12588329_1' || true)"
gz2="$(_compress_if_exists 'SRR12588329_2' || true)"
gzs="$(_compress_if_exists 'SRR12588329' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVB_iPSC_cyto_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588330"
gz1="$(_compress_if_exists 'SRR12588330_1' || true)"
gz2="$(_compress_if_exists 'SRR12588330_2' || true)"
gzs="$(_compress_if_exists 'SRR12588330' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVB_iPSC_cyto_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588331"
gz1="$(_compress_if_exists 'SRR12588331_1' || true)"
gz2="$(_compress_if_exists 'SRR12588331_2' || true)"
gzs="$(_compress_if_exists 'SRR12588331' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVB_iPSC_insol_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588332"
gz1="$(_compress_if_exists 'SRR12588332_1' || true)"
gz2="$(_compress_if_exists 'SRR12588332_2' || true)"
gzs="$(_compress_if_exists 'SRR12588332' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVB_iPSC_insol_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588333"
gz1="$(_compress_if_exists 'SRR12588333_1' || true)"
gz2="$(_compress_if_exists 'SRR12588333_2' || true)"
gzs="$(_compress_if_exists 'SRR12588333' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVB_iPSC_nuclei_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588334"
gz1="$(_compress_if_exists 'SRR12588334_1' || true)"
gz2="$(_compress_if_exists 'SRR12588334_2' || true)"
gzs="$(_compress_if_exists 'SRR12588334' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVB_iPSC_nuclei_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588335"
gz1="$(_compress_if_exists 'SRR12588335_1' || true)"
gz2="$(_compress_if_exists 'SRR12588335_2' || true)"
gzs="$(_compress_if_exists 'SRR12588335' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVB_iPSC_total_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588336"
gz1="$(_compress_if_exists 'SRR12588336_1' || true)"
gz2="$(_compress_if_exists 'SRR12588336_2' || true)"
gzs="$(_compress_if_exists 'SRR12588336' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVB_iPSC_total_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588337"
gz1="$(_compress_if_exists 'SRR12588337_1' || true)"
gz2="$(_compress_if_exists 'SRR12588337_2' || true)"
gzs="$(_compress_if_exists 'SRR12588337' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "cyto_CR463_puro_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588338"
gz1="$(_compress_if_exists 'SRR12588338_1' || true)"
gz2="$(_compress_if_exists 'SRR12588338_2' || true)"
gzs="$(_compress_if_exists 'SRR12588338' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "cyto_CR463_puro_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588339"
gz1="$(_compress_if_exists 'SRR12588339_1' || true)"
gz2="$(_compress_if_exists 'SRR12588339_2' || true)"
gzs="$(_compress_if_exists 'SRR12588339' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "cyto_CR463_rec_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588340"
gz1="$(_compress_if_exists 'SRR12588340_1' || true)"
gz2="$(_compress_if_exists 'SRR12588340_2' || true)"
gzs="$(_compress_if_exists 'SRR12588340' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "cyto_CR463_rec_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588341"
gz1="$(_compress_if_exists 'SRR12588341_1' || true)"
gz2="$(_compress_if_exists 'SRR12588341_2' || true)"
gzs="$(_compress_if_exists 'SRR12588341' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "cyto_CR463_ut_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588342"
gz1="$(_compress_if_exists 'SRR12588342_1' || true)"
gz2="$(_compress_if_exists 'SRR12588342_2' || true)"
gzs="$(_compress_if_exists 'SRR12588342' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "cyto_CR463_ut_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588343"
gz1="$(_compress_if_exists 'SRR12588343_1' || true)"
gz2="$(_compress_if_exists 'SRR12588343_2' || true)"
gzs="$(_compress_if_exists 'SRR12588343' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "cyto_CR464_puro_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588344"
gz1="$(_compress_if_exists 'SRR12588344_1' || true)"
gz2="$(_compress_if_exists 'SRR12588344_2' || true)"
gzs="$(_compress_if_exists 'SRR12588344' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "cyto_CR464_puro_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588345"
gz1="$(_compress_if_exists 'SRR12588345_1' || true)"
gz2="$(_compress_if_exists 'SRR12588345_2' || true)"
gzs="$(_compress_if_exists 'SRR12588345' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "cyto_CR464_rec_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588346"
gz1="$(_compress_if_exists 'SRR12588346_1' || true)"
gz2="$(_compress_if_exists 'SRR12588346_2' || true)"
gzs="$(_compress_if_exists 'SRR12588346' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "cyto_CR464_rec_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588347"
gz1="$(_compress_if_exists 'SRR12588347_1' || true)"
gz2="$(_compress_if_exists 'SRR12588347_2' || true)"
gzs="$(_compress_if_exists 'SRR12588347' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "cyto_CR464_ut_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588348"
gz1="$(_compress_if_exists 'SRR12588348_1' || true)"
gz2="$(_compress_if_exists 'SRR12588348_2' || true)"
gzs="$(_compress_if_exists 'SRR12588348' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "cyto_CR464_ut_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588349"
gz1="$(_compress_if_exists 'SRR12588349_1' || true)"
gz2="$(_compress_if_exists 'SRR12588349_2' || true)"
gzs="$(_compress_if_exists 'SRR12588349' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_ESC_cyto_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588350"
gz1="$(_compress_if_exists 'SRR12588350_1' || true)"
gz2="$(_compress_if_exists 'SRR12588350_2' || true)"
gzs="$(_compress_if_exists 'SRR12588350' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_ESC_cyto_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588351"
gz1="$(_compress_if_exists 'SRR12588351_1' || true)"
gz2="$(_compress_if_exists 'SRR12588351_2' || true)"
gzs="$(_compress_if_exists 'SRR12588351' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_ESC_insol_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588352"
gz1="$(_compress_if_exists 'SRR12588352_1' || true)"
gz2="$(_compress_if_exists 'SRR12588352_2' || true)"
gzs="$(_compress_if_exists 'SRR12588352' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_ESC_insol_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588353"
gz1="$(_compress_if_exists 'SRR12588353_1' || true)"
gz2="$(_compress_if_exists 'SRR12588353_2' || true)"
gzs="$(_compress_if_exists 'SRR12588353' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_ESC_nuclei_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588354"
gz1="$(_compress_if_exists 'SRR12588354_1' || true)"
gz2="$(_compress_if_exists 'SRR12588354_2' || true)"
gzs="$(_compress_if_exists 'SRR12588354' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_ESC_nuclei_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588355"
gz1="$(_compress_if_exists 'SRR12588355_1' || true)"
gz2="$(_compress_if_exists 'SRR12588355_2' || true)"
gzs="$(_compress_if_exists 'SRR12588355' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_ESC_total_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588356"
gz1="$(_compress_if_exists 'SRR12588356_1' || true)"
gz2="$(_compress_if_exists 'SRR12588356_2' || true)"
gzs="$(_compress_if_exists 'SRR12588356' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_ESC_total_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588357"
gz1="$(_compress_if_exists 'SRR12588357_1' || true)"
gz2="$(_compress_if_exists 'SRR12588357_2' || true)"
gzs="$(_compress_if_exists 'SRR12588357' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_puro1_cyto_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588358"
gz1="$(_compress_if_exists 'SRR12588358_1' || true)"
gz2="$(_compress_if_exists 'SRR12588358_2' || true)"
gzs="$(_compress_if_exists 'SRR12588358' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_puro1_insol_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588359"
gz1="$(_compress_if_exists 'SRR12588359_1' || true)"
gz2="$(_compress_if_exists 'SRR12588359_2' || true)"
gzs="$(_compress_if_exists 'SRR12588359' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_puro1_nucl_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588360"
gz1="$(_compress_if_exists 'SRR12588360_1' || true)"
gz2="$(_compress_if_exists 'SRR12588360_2' || true)"
gzs="$(_compress_if_exists 'SRR12588360' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_puro1_total_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588361"
gz1="$(_compress_if_exists 'SRR12588361_1' || true)"
gz2="$(_compress_if_exists 'SRR12588361_2' || true)"
gzs="$(_compress_if_exists 'SRR12588361' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_puro_cyto_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588362"
gz1="$(_compress_if_exists 'SRR12588362_1' || true)"
gz2="$(_compress_if_exists 'SRR12588362_2' || true)"
gzs="$(_compress_if_exists 'SRR12588362' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_puro_insol_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588363"
gz1="$(_compress_if_exists 'SRR12588363_1' || true)"
gz2="$(_compress_if_exists 'SRR12588363_2' || true)"
gzs="$(_compress_if_exists 'SRR12588363' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_puro_nucl_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588364"
gz1="$(_compress_if_exists 'SRR12588364_1' || true)"
gz2="$(_compress_if_exists 'SRR12588364_2' || true)"
gzs="$(_compress_if_exists 'SRR12588364' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_puro_total_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588365"
gz1="$(_compress_if_exists 'SRR12588365_1' || true)"
gz2="$(_compress_if_exists 'SRR12588365_2' || true)"
gzs="$(_compress_if_exists 'SRR12588365' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_rec_cyto_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588366"
gz1="$(_compress_if_exists 'SRR12588366_1' || true)"
gz2="$(_compress_if_exists 'SRR12588366_2' || true)"
gzs="$(_compress_if_exists 'SRR12588366' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_rec_cyto_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588367"
gz1="$(_compress_if_exists 'SRR12588367_1' || true)"
gz2="$(_compress_if_exists 'SRR12588367_2' || true)"
gzs="$(_compress_if_exists 'SRR12588367' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_rec_insol_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588368"
gz1="$(_compress_if_exists 'SRR12588368_1' || true)"
gz2="$(_compress_if_exists 'SRR12588368_2' || true)"
gzs="$(_compress_if_exists 'SRR12588368' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_rec_insol_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588369"
gz1="$(_compress_if_exists 'SRR12588369_1' || true)"
gz2="$(_compress_if_exists 'SRR12588369_2' || true)"
gzs="$(_compress_if_exists 'SRR12588369' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_rec_nucl_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588370"
gz1="$(_compress_if_exists 'SRR12588370_1' || true)"
gz2="$(_compress_if_exists 'SRR12588370_2' || true)"
gzs="$(_compress_if_exists 'SRR12588370' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_rec_nucl_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588371"
gz1="$(_compress_if_exists 'SRR12588371_1' || true)"
gz2="$(_compress_if_exists 'SRR12588371_2' || true)"
gzs="$(_compress_if_exists 'SRR12588371' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_rec_total_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588372"
gz1="$(_compress_if_exists 'SRR12588372_1' || true)"
gz2="$(_compress_if_exists 'SRR12588372_2' || true)"
gzs="$(_compress_if_exists 'SRR12588372' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_rec_total_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588373"
gz1="$(_compress_if_exists 'SRR12588373_1' || true)"
gz2="$(_compress_if_exists 'SRR12588373_2' || true)"
gzs="$(_compress_if_exists 'SRR12588373' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_ut_cyto_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588374"
gz1="$(_compress_if_exists 'SRR12588374_1' || true)"
gz2="$(_compress_if_exists 'SRR12588374_2' || true)"
gzs="$(_compress_if_exists 'SRR12588374' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_ut_cyto_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588375"
gz1="$(_compress_if_exists 'SRR12588375_1' || true)"
gz2="$(_compress_if_exists 'SRR12588375_2' || true)"
gzs="$(_compress_if_exists 'SRR12588375' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_ut_insol_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588376"
gz1="$(_compress_if_exists 'SRR12588376_1' || true)"
gz2="$(_compress_if_exists 'SRR12588376_2' || true)"
gzs="$(_compress_if_exists 'SRR12588376' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_ut_insol_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588377"
gz1="$(_compress_if_exists 'SRR12588377_1' || true)"
gz2="$(_compress_if_exists 'SRR12588377_2' || true)"
gzs="$(_compress_if_exists 'SRR12588377' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_ut_nucl_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588378"
gz1="$(_compress_if_exists 'SRR12588378_1' || true)"
gz2="$(_compress_if_exists 'SRR12588378_2' || true)"
gzs="$(_compress_if_exists 'SRR12588378' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_ut_nucl_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588379"
gz1="$(_compress_if_exists 'SRR12588379_1' || true)"
gz2="$(_compress_if_exists 'SRR12588379_2' || true)"
gzs="$(_compress_if_exists 'SRR12588379' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_ut_total_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588380"
gz1="$(_compress_if_exists 'SRR12588380_1' || true)"
gz2="$(_compress_if_exists 'SRR12588380_2' || true)"
gzs="$(_compress_if_exists 'SRR12588380' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H1_ut_total_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588381"
gz1="$(_compress_if_exists 'SRR12588381_1' || true)"
gz2="$(_compress_if_exists 'SRR12588381_2' || true)"
gzs="$(_compress_if_exists 'SRR12588381' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H9_ESC_cyto_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588382"
gz1="$(_compress_if_exists 'SRR12588382_1' || true)"
gz2="$(_compress_if_exists 'SRR12588382_2' || true)"
gzs="$(_compress_if_exists 'SRR12588382' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H9_ESC_insol_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588383"
gz1="$(_compress_if_exists 'SRR12588383_1' || true)"
gz2="$(_compress_if_exists 'SRR12588383_2' || true)"
gzs="$(_compress_if_exists 'SRR12588383' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H9_ESC_nuclei_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588384"
gz1="$(_compress_if_exists 'SRR12588384_1' || true)"
gz2="$(_compress_if_exists 'SRR12588384_2' || true)"
gzs="$(_compress_if_exists 'SRR12588384' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "H9_ESC_total_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588385"
gz1="$(_compress_if_exists 'SRR12588385_1' || true)"
gz2="$(_compress_if_exists 'SRR12588385_2' || true)"
gzs="$(_compress_if_exists 'SRR12588385' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "insol_CR463_puro_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588386"
gz1="$(_compress_if_exists 'SRR12588386_1' || true)"
gz2="$(_compress_if_exists 'SRR12588386_2' || true)"
gzs="$(_compress_if_exists 'SRR12588386' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "insol_CR463_puro_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588387"
gz1="$(_compress_if_exists 'SRR12588387_1' || true)"
gz2="$(_compress_if_exists 'SRR12588387_2' || true)"
gzs="$(_compress_if_exists 'SRR12588387' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "insol_CR463_rec_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588388"
gz1="$(_compress_if_exists 'SRR12588388_1' || true)"
gz2="$(_compress_if_exists 'SRR12588388_2' || true)"
gzs="$(_compress_if_exists 'SRR12588388' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "insol_CR463_rec_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588389"
gz1="$(_compress_if_exists 'SRR12588389_1' || true)"
gz2="$(_compress_if_exists 'SRR12588389_2' || true)"
gzs="$(_compress_if_exists 'SRR12588389' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "insol_CR463_ut_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588390"
gz1="$(_compress_if_exists 'SRR12588390_1' || true)"
gz2="$(_compress_if_exists 'SRR12588390_2' || true)"
gzs="$(_compress_if_exists 'SRR12588390' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "insol_CR463_ut_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588391"
gz1="$(_compress_if_exists 'SRR12588391_1' || true)"
gz2="$(_compress_if_exists 'SRR12588391_2' || true)"
gzs="$(_compress_if_exists 'SRR12588391' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "insol_CR464_puro_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588392"
gz1="$(_compress_if_exists 'SRR12588392_1' || true)"
gz2="$(_compress_if_exists 'SRR12588392_2' || true)"
gzs="$(_compress_if_exists 'SRR12588392' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "insol_CR464_puro_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588393"
gz1="$(_compress_if_exists 'SRR12588393_1' || true)"
gz2="$(_compress_if_exists 'SRR12588393_2' || true)"
gzs="$(_compress_if_exists 'SRR12588393' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "insol_CR464_rec_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588394"
gz1="$(_compress_if_exists 'SRR12588394_1' || true)"
gz2="$(_compress_if_exists 'SRR12588394_2' || true)"
gzs="$(_compress_if_exists 'SRR12588394' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "insol_CR464_rec_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588395"
gz1="$(_compress_if_exists 'SRR12588395_1' || true)"
gz2="$(_compress_if_exists 'SRR12588395_2' || true)"
gzs="$(_compress_if_exists 'SRR12588395' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "insol_CR464_ut_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588396"
gz1="$(_compress_if_exists 'SRR12588396_1' || true)"
gz2="$(_compress_if_exists 'SRR12588396_2' || true)"
gzs="$(_compress_if_exists 'SRR12588396' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "insol_CR464_ut_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588397"
gz1="$(_compress_if_exists 'SRR12588397_1' || true)"
gz2="$(_compress_if_exists 'SRR12588397_2' || true)"
gzs="$(_compress_if_exists 'SRR12588397' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Kin2-4_puro_cyto_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588398"
gz1="$(_compress_if_exists 'SRR12588398_1' || true)"
gz2="$(_compress_if_exists 'SRR12588398_2' || true)"
gzs="$(_compress_if_exists 'SRR12588398' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Kin2-4_puro_cyto_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588399"
gz1="$(_compress_if_exists 'SRR12588399_1' || true)"
gz2="$(_compress_if_exists 'SRR12588399_2' || true)"
gzs="$(_compress_if_exists 'SRR12588399' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Kin2-4_puro_insol_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588400"
gz1="$(_compress_if_exists 'SRR12588400_1' || true)"
gz2="$(_compress_if_exists 'SRR12588400_2' || true)"
gzs="$(_compress_if_exists 'SRR12588400' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Kin2-4_puro_insol_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588401"
gz1="$(_compress_if_exists 'SRR12588401_1' || true)"
gz2="$(_compress_if_exists 'SRR12588401_2' || true)"
gzs="$(_compress_if_exists 'SRR12588401' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Kin2-4_puro_nucl_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588402"
gz1="$(_compress_if_exists 'SRR12588402_1' || true)"
gz2="$(_compress_if_exists 'SRR12588402_2' || true)"
gzs="$(_compress_if_exists 'SRR12588402' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Kin2-4_puro_nucl_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588403"
gz1="$(_compress_if_exists 'SRR12588403_1' || true)"
gz2="$(_compress_if_exists 'SRR12588403_2' || true)"
gzs="$(_compress_if_exists 'SRR12588403' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Kin2-4_puro_total_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588404"
gz1="$(_compress_if_exists 'SRR12588404_1' || true)"
gz2="$(_compress_if_exists 'SRR12588404_2' || true)"
gzs="$(_compress_if_exists 'SRR12588404' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Kin2-4_puro_total_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588405"
gz1="$(_compress_if_exists 'SRR12588405_1' || true)"
gz2="$(_compress_if_exists 'SRR12588405_2' || true)"
gzs="$(_compress_if_exists 'SRR12588405' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Kin2-4_ut_cyto_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588406"
gz1="$(_compress_if_exists 'SRR12588406_1' || true)"
gz2="$(_compress_if_exists 'SRR12588406_2' || true)"
gzs="$(_compress_if_exists 'SRR12588406' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Kin2-4_ut_cyto_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588407"
gz1="$(_compress_if_exists 'SRR12588407_1' || true)"
gz2="$(_compress_if_exists 'SRR12588407_2' || true)"
gzs="$(_compress_if_exists 'SRR12588407' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Kin2-4_ut_insol_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588408"
gz1="$(_compress_if_exists 'SRR12588408_1' || true)"
gz2="$(_compress_if_exists 'SRR12588408_2' || true)"
gzs="$(_compress_if_exists 'SRR12588408' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Kin2-4_ut_insol_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588409"
gz1="$(_compress_if_exists 'SRR12588409_1' || true)"
gz2="$(_compress_if_exists 'SRR12588409_2' || true)"
gzs="$(_compress_if_exists 'SRR12588409' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Kin2-4_ut_nucl_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588410"
gz1="$(_compress_if_exists 'SRR12588410_1' || true)"
gz2="$(_compress_if_exists 'SRR12588410_2' || true)"
gzs="$(_compress_if_exists 'SRR12588410' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Kin2-4_ut_nucl_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588411"
gz1="$(_compress_if_exists 'SRR12588411_1' || true)"
gz2="$(_compress_if_exists 'SRR12588411_2' || true)"
gzs="$(_compress_if_exists 'SRR12588411' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Kin2-4_ut_total_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588412"
gz1="$(_compress_if_exists 'SRR12588412_1' || true)"
gz2="$(_compress_if_exists 'SRR12588412_2' || true)"
gzs="$(_compress_if_exists 'SRR12588412' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Kin2-4_ut_total_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588413"
gz1="$(_compress_if_exists 'SRR12588413_1' || true)"
gz2="$(_compress_if_exists 'SRR12588413_2' || true)"
gzs="$(_compress_if_exists 'SRR12588413' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "nuc_CR463_puro_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588414"
gz1="$(_compress_if_exists 'SRR12588414_1' || true)"
gz2="$(_compress_if_exists 'SRR12588414_2' || true)"
gzs="$(_compress_if_exists 'SRR12588414' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "nuc_CR463_puro_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588415"
gz1="$(_compress_if_exists 'SRR12588415_1' || true)"
gz2="$(_compress_if_exists 'SRR12588415_2' || true)"
gzs="$(_compress_if_exists 'SRR12588415' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "nuc_CR463_rec_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588416"
gz1="$(_compress_if_exists 'SRR12588416_1' || true)"
gz2="$(_compress_if_exists 'SRR12588416_2' || true)"
gzs="$(_compress_if_exists 'SRR12588416' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "nuc_CR463_rec_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588417"
gz1="$(_compress_if_exists 'SRR12588417_1' || true)"
gz2="$(_compress_if_exists 'SRR12588417_2' || true)"
gzs="$(_compress_if_exists 'SRR12588417' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "nuc_CR463_ut_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588418"
gz1="$(_compress_if_exists 'SRR12588418_1' || true)"
gz2="$(_compress_if_exists 'SRR12588418_2' || true)"
gzs="$(_compress_if_exists 'SRR12588418' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "nuc_CR463_ut_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588419"
gz1="$(_compress_if_exists 'SRR12588419_1' || true)"
gz2="$(_compress_if_exists 'SRR12588419_2' || true)"
gzs="$(_compress_if_exists 'SRR12588419' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "nuc_CR464_puro_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588420"
gz1="$(_compress_if_exists 'SRR12588420_1' || true)"
gz2="$(_compress_if_exists 'SRR12588420_2' || true)"
gzs="$(_compress_if_exists 'SRR12588420' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "nuc_CR464_puro_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588421"
gz1="$(_compress_if_exists 'SRR12588421_1' || true)"
gz2="$(_compress_if_exists 'SRR12588421_2' || true)"
gzs="$(_compress_if_exists 'SRR12588421' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "nuc_CR464_rec_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588422"
gz1="$(_compress_if_exists 'SRR12588422_1' || true)"
gz2="$(_compress_if_exists 'SRR12588422_2' || true)"
gzs="$(_compress_if_exists 'SRR12588422' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "nuc_CR464_rec_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588423"
gz1="$(_compress_if_exists 'SRR12588423_1' || true)"
gz2="$(_compress_if_exists 'SRR12588423_2' || true)"
gzs="$(_compress_if_exists 'SRR12588423' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "nuc_CR464_ut_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588424"
gz1="$(_compress_if_exists 'SRR12588424_1' || true)"
gz2="$(_compress_if_exists 'SRR12588424_2' || true)"
gzs="$(_compress_if_exists 'SRR12588424' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "nuc_CR464_ut_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588425"
gz1="$(_compress_if_exists 'SRR12588425_1' || true)"
gz2="$(_compress_if_exists 'SRR12588425_2' || true)"
gzs="$(_compress_if_exists 'SRR12588425' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "total_CR463_puro_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588426"
gz1="$(_compress_if_exists 'SRR12588426_1' || true)"
gz2="$(_compress_if_exists 'SRR12588426_2' || true)"
gzs="$(_compress_if_exists 'SRR12588426' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "total_CR463_puro_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588427"
gz1="$(_compress_if_exists 'SRR12588427_1' || true)"
gz2="$(_compress_if_exists 'SRR12588427_2' || true)"
gzs="$(_compress_if_exists 'SRR12588427' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "total_CR463_rec_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588428"
gz1="$(_compress_if_exists 'SRR12588428_1' || true)"
gz2="$(_compress_if_exists 'SRR12588428_2' || true)"
gzs="$(_compress_if_exists 'SRR12588428' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "total_CR463_rec_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588429"
gz1="$(_compress_if_exists 'SRR12588429_1' || true)"
gz2="$(_compress_if_exists 'SRR12588429_2' || true)"
gzs="$(_compress_if_exists 'SRR12588429' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "total_CR463_ut_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588430"
gz1="$(_compress_if_exists 'SRR12588430_1' || true)"
gz2="$(_compress_if_exists 'SRR12588430_2' || true)"
gzs="$(_compress_if_exists 'SRR12588430' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "total_CR463_ut_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588431"
gz1="$(_compress_if_exists 'SRR12588431_1' || true)"
gz2="$(_compress_if_exists 'SRR12588431_2' || true)"
gzs="$(_compress_if_exists 'SRR12588431' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "total_CR464_puro_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588432"
gz1="$(_compress_if_exists 'SRR12588432_1' || true)"
gz2="$(_compress_if_exists 'SRR12588432_2' || true)"
gzs="$(_compress_if_exists 'SRR12588432' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "total_CR464_puro_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588433"
gz1="$(_compress_if_exists 'SRR12588433_1' || true)"
gz2="$(_compress_if_exists 'SRR12588433_2' || true)"
gzs="$(_compress_if_exists 'SRR12588433' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "total_CR464_rec_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588434"
gz1="$(_compress_if_exists 'SRR12588434_1' || true)"
gz2="$(_compress_if_exists 'SRR12588434_2' || true)"
gzs="$(_compress_if_exists 'SRR12588434' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "total_CR464_rec_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588435"
gz1="$(_compress_if_exists 'SRR12588435_1' || true)"
gz2="$(_compress_if_exists 'SRR12588435_2' || true)"
gzs="$(_compress_if_exists 'SRR12588435' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "total_CR464_ut_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588436"
gz1="$(_compress_if_exists 'SRR12588436_1' || true)"
gz2="$(_compress_if_exists 'SRR12588436_2' || true)"
gzs="$(_compress_if_exists 'SRR12588436' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "total_CR464_ut_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588437"
gz1="$(_compress_if_exists 'SRR12588437_1' || true)"
gz2="$(_compress_if_exists 'SRR12588437_2' || true)"
gzs="$(_compress_if_exists 'SRR12588437' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVB_TDP43_puro_input_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588438"
gz1="$(_compress_if_exists 'SRR12588438_1' || true)"
gz2="$(_compress_if_exists 'SRR12588438_2' || true)"
gzs="$(_compress_if_exists 'SRR12588438' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVB_TDP43_puro_input_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588439"
gz1="$(_compress_if_exists 'SRR12588439_1' || true)"
gz2="$(_compress_if_exists 'SRR12588439_2' || true)"
gzs="$(_compress_if_exists 'SRR12588439' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVB_TDP43_puro_IP_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588440"
gz1="$(_compress_if_exists 'SRR12588440_1' || true)"
gz2="$(_compress_if_exists 'SRR12588440_2' || true)"
gzs="$(_compress_if_exists 'SRR12588440' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVB_TDP43_puro_IP_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588441"
gz1="$(_compress_if_exists 'SRR12588441_1' || true)"
gz2="$(_compress_if_exists 'SRR12588441_2' || true)"
gzs="$(_compress_if_exists 'SRR12588441' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVB_TDP43_ut_input_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588442"
gz1="$(_compress_if_exists 'SRR12588442_1' || true)"
gz2="$(_compress_if_exists 'SRR12588442_2' || true)"
gzs="$(_compress_if_exists 'SRR12588442' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVB_TDP43_ut_input_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588443"
gz1="$(_compress_if_exists 'SRR12588443_1' || true)"
gz2="$(_compress_if_exists 'SRR12588443_2' || true)"
gzs="$(_compress_if_exists 'SRR12588443' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVB_TDP43_ut_IP_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588444"
gz1="$(_compress_if_exists 'SRR12588444_1' || true)"
gz2="$(_compress_if_exists 'SRR12588444_2' || true)"
gzs="$(_compress_if_exists 'SRR12588444' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVB_TDP43_ut_IP_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588445"
gz1="$(_compress_if_exists 'SRR12588445_1' || true)"
gz2="$(_compress_if_exists 'SRR12588445_2' || true)"
gzs="$(_compress_if_exists 'SRR12588445' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVC_G3BP_puro_input_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588446"
gz1="$(_compress_if_exists 'SRR12588446_1' || true)"
gz2="$(_compress_if_exists 'SRR12588446_2' || true)"
gzs="$(_compress_if_exists 'SRR12588446' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVC_G3BP_puro_input_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588447"
gz1="$(_compress_if_exists 'SRR12588447_1' || true)"
gz2="$(_compress_if_exists 'SRR12588447_2' || true)"
gzs="$(_compress_if_exists 'SRR12588447' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVC_G3BP_puro_IP_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588448"
gz1="$(_compress_if_exists 'SRR12588448_1' || true)"
gz2="$(_compress_if_exists 'SRR12588448_2' || true)"
gzs="$(_compress_if_exists 'SRR12588448' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVC_G3BP_puro_IP_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588449"
gz1="$(_compress_if_exists 'SRR12588449_1' || true)"
gz2="$(_compress_if_exists 'SRR12588449_2' || true)"
gzs="$(_compress_if_exists 'SRR12588449' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVC_G3BP_ut_input_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588450"
gz1="$(_compress_if_exists 'SRR12588450_1' || true)"
gz2="$(_compress_if_exists 'SRR12588450_2' || true)"
gzs="$(_compress_if_exists 'SRR12588450' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVC_G3BP_ut_input_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588451"
gz1="$(_compress_if_exists 'SRR12588451_1' || true)"
gz2="$(_compress_if_exists 'SRR12588451_2' || true)"
gzs="$(_compress_if_exists 'SRR12588451' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVC_G3BP_ut_IP_rep1.fastq.gz"
fi

fasterq-dump --split-files "SRR12588452"
gz1="$(_compress_if_exists 'SRR12588452_1' || true)"
gz2="$(_compress_if_exists 'SRR12588452_2' || true)"
gzs="$(_compress_if_exists 'SRR12588452' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "CVC_G3BP_ut_IP_rep2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588453"
gz1="$(_compress_if_exists 'SRR12588453_1' || true)"
gz2="$(_compress_if_exists 'SRR12588453_2' || true)"
gzs="$(_compress_if_exists 'SRR12588453' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TIA1_MN_input_rep1_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TIA1_MN_input_rep1_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588454"
gz1="$(_compress_if_exists 'SRR12588454_1' || true)"
gz2="$(_compress_if_exists 'SRR12588454_2' || true)"
gzs="$(_compress_if_exists 'SRR12588454' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TIA1_MN_input_rep2_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TIA1_MN_input_rep2_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588455"
gz1="$(_compress_if_exists 'SRR12588455_1' || true)"
gz2="$(_compress_if_exists 'SRR12588455_2' || true)"
gzs="$(_compress_if_exists 'SRR12588455' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TIA1_MN_IP_rep1_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TIA1_MN_IP_rep1_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588456"
gz1="$(_compress_if_exists 'SRR12588456_1' || true)"
gz2="$(_compress_if_exists 'SRR12588456_2' || true)"
gzs="$(_compress_if_exists 'SRR12588456' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TIA1_MN_IP_rep2_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TIA1_MN_IP_rep2_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588457"
gz1="$(_compress_if_exists 'SRR12588457_1' || true)"
gz2="$(_compress_if_exists 'SRR12588457_2' || true)"
gzs="$(_compress_if_exists 'SRR12588457' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TIA1_Stressed_MN_input_rep1_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TIA1_Stressed_MN_input_rep1_R2.fastq.gz"
fi

fasterq-dump --split-files "SRR12588458"
gz1="$(_compress_if_exists 'SRR12588458_1' || true)"
gz2="$(_compress_if_exists 'SRR12588458_2' || true)"
gzs="$(_compress_if_exists 'SRR12588458' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TIA1_Stressed_MN_IP_rep1_R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "TIA1_Stressed_MN_IP_rep1_R2.fastq.gz"
fi


# Option B: Direct download (larger .sra files)
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588329/SRR12588329"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588330/SRR12588330"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588331/SRR12588331"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588332/SRR12588332"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588333/SRR12588333"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588334/SRR12588334"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588335/SRR12588335"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588336/SRR12588336"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588337/SRR12588337"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588338/SRR12588338"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588339/SRR12588339"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588340/SRR12588340"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588341/SRR12588341"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588342/SRR12588342"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588343/SRR12588343"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588344/SRR12588344"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588345/SRR12588345"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588346/SRR12588346"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588347/SRR12588347"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588348/SRR12588348"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588349/SRR12588349"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588350/SRR12588350"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588351/SRR12588351"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588352/SRR12588352"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588353/SRR12588353"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588354/SRR12588354"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588355/SRR12588355"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588356/SRR12588356"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588357/SRR12588357"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588358/SRR12588358"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588359/SRR12588359"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588360/SRR12588360"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588361/SRR12588361"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588362/SRR12588362"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588363/SRR12588363"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588364/SRR12588364"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588365/SRR12588365"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588366/SRR12588366"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588367/SRR12588367"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588368/SRR12588368"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588369/SRR12588369"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588370/SRR12588370"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588371/SRR12588371"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588372/SRR12588372"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588373/SRR12588373"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588374/SRR12588374"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588375/SRR12588375"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588376/SRR12588376"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588377/SRR12588377"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588378/SRR12588378"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588379/SRR12588379"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588380/SRR12588380"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588381/SRR12588381"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588382/SRR12588382"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588383/SRR12588383"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588384/SRR12588384"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588385/SRR12588385"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588386/SRR12588386"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588387/SRR12588387"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588388/SRR12588388"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588389/SRR12588389"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588390/SRR12588390"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588391/SRR12588391"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588392/SRR12588392"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588393/SRR12588393"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588394/SRR12588394"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588395/SRR12588395"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588396/SRR12588396"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588397/SRR12588397"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588398/SRR12588398"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588399/SRR12588399"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588400/SRR12588400"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588401/SRR12588401"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588402/SRR12588402"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588403/SRR12588403"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588404/SRR12588404"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588405/SRR12588405"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588406/SRR12588406"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588407/SRR12588407"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588408/SRR12588408"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588409/SRR12588409"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588410/SRR12588410"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588411/SRR12588411"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588412/SRR12588412"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588413/SRR12588413"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588414/SRR12588414"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588415/SRR12588415"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588416/SRR12588416"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588417/SRR12588417"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588418/SRR12588418"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588419/SRR12588419"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588420/SRR12588420"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588421/SRR12588421"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588422/SRR12588422"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588423/SRR12588423"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588424/SRR12588424"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588425/SRR12588425"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588426/SRR12588426"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588427/SRR12588427"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588428/SRR12588428"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588429/SRR12588429"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588430/SRR12588430"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588431/SRR12588431"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588432/SRR12588432"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588433/SRR12588433"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588434/SRR12588434"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588435/SRR12588435"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588436/SRR12588436"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588437/SRR12588437"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588438/SRR12588438"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588439/SRR12588439"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588440/SRR12588440"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588441/SRR12588441"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588442/SRR12588442"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588443/SRR12588443"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588444/SRR12588444"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588445/SRR12588445"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588446/SRR12588446"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588447/SRR12588447"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588448/SRR12588448"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588449/SRR12588449"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588450/SRR12588450"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588451/SRR12588451"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588452/SRR12588452"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588453/SRR12588453"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588454/SRR12588454"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588455/SRR12588455"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588456/SRR12588456"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588457/SRR12588457"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588458/SRR12588458"

# --- Additional data files ---
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588437/SRR12588437"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588438/SRR12588438"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588439/SRR12588439"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588440/SRR12588440"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588441/SRR12588441"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588442/SRR12588442"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588443/SRR12588443"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588444/SRR12588444"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588445/SRR12588445"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588446/SRR12588446"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588447/SRR12588447"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588448/SRR12588448"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588449/SRR12588449"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588450/SRR12588450"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588451/SRR12588451"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588452/SRR12588452"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588453/SRR12588453"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588454/SRR12588454"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588455/SRR12588455"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588456/SRR12588456"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588457/SRR12588457"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588458/SRR12588458"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588329/SRR12588329"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588330/SRR12588330"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588331/SRR12588331"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588332/SRR12588332"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588333/SRR12588333"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588334/SRR12588334"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588335/SRR12588335"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588336/SRR12588336"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588337/SRR12588337"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588338/SRR12588338"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588339/SRR12588339"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588340/SRR12588340"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588341/SRR12588341"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588342/SRR12588342"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588343/SRR12588343"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588344/SRR12588344"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588345/SRR12588345"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588346/SRR12588346"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588347/SRR12588347"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588348/SRR12588348"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588349/SRR12588349"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588350/SRR12588350"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588351/SRR12588351"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588352/SRR12588352"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588353/SRR12588353"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588354/SRR12588354"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588355/SRR12588355"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588356/SRR12588356"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588357/SRR12588357"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588358/SRR12588358"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588359/SRR12588359"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588360/SRR12588360"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588361/SRR12588361"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588362/SRR12588362"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588363/SRR12588363"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588364/SRR12588364"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588365/SRR12588365"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588366/SRR12588366"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588367/SRR12588367"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588368/SRR12588368"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588369/SRR12588369"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588370/SRR12588370"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588371/SRR12588371"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588372/SRR12588372"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588373/SRR12588373"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588374/SRR12588374"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588375/SRR12588375"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588376/SRR12588376"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588377/SRR12588377"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588378/SRR12588378"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588379/SRR12588379"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588380/SRR12588380"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588381/SRR12588381"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588382/SRR12588382"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588383/SRR12588383"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588384/SRR12588384"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588385/SRR12588385"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588386/SRR12588386"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588387/SRR12588387"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588388/SRR12588388"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588389/SRR12588389"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588390/SRR12588390"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588391/SRR12588391"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588392/SRR12588392"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588393/SRR12588393"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588394/SRR12588394"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588395/SRR12588395"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588396/SRR12588396"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588397/SRR12588397"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588398/SRR12588398"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588399/SRR12588399"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588400/SRR12588400"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588401/SRR12588401"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588402/SRR12588402"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588403/SRR12588403"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588404/SRR12588404"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588405/SRR12588405"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588406/SRR12588406"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588407/SRR12588407"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588408/SRR12588408"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588409/SRR12588409"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588410/SRR12588410"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588411/SRR12588411"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588412/SRR12588412"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588413/SRR12588413"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588414/SRR12588414"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588415/SRR12588415"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588416/SRR12588416"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588417/SRR12588417"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588418/SRR12588418"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588419/SRR12588419"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588420/SRR12588420"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588421/SRR12588421"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588422/SRR12588422"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588423/SRR12588423"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588424/SRR12588424"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588425/SRR12588425"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588426/SRR12588426"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588427/SRR12588427"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588428/SRR12588428"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588429/SRR12588429"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588430/SRR12588430"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588431/SRR12588431"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588432/SRR12588432"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588433/SRR12588433"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588434/SRR12588434"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588435/SRR12588435"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12588436/SRR12588436"

echo "Download complete. Files saved to $OUTDIR"