#!/usr/bin/env bash
# Bulk download script for GSE155649
# Generated from Yeo Lab Publications Database
# Total files: 164

OUTDIR="GSE155649"
mkdir -p "$OUTDIR"
cd "$OUTDIR"

# --- GEO supplementary files ---
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155649/suppl/GSE155649_RAW.tar" -O "GSE155649_RAW.tar"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155649/suppl/GSE155649_SLBP_0_72hr_merged_a0_b0_e0.01.bed.gz" -O "GSE155649_SLBP_0_72hr_merged_a0_b0_e0.01.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155649/suppl/GSE155649_SLBP_0_72hr_merged_a0_b0_e0.01.fwd.sorted.rmdup.readfiltered.sorted.bw" -O "GSE155649_SLBP_0_72hr_merged_a0_b0_e0.01.fwd.sorted.rmdup.readfiltered.sorted.bw"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155649/suppl/GSE155649_SLBP_0_72hr_merged_a0_b0_e0.01.rev.sorted.rmdup.readfiltered.sorted.bw" -O "GSE155649_SLBP_0_72hr_merged_a0_b0_e0.01.rev.sorted.rmdup.readfiltered.sorted.bw"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155649/suppl/GSE155649_SLBP_1000_48hr_merged_a0_b0_e0.01.bed.gz" -O "GSE155649_SLBP_1000_48hr_merged_a0_b0_e0.01.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155649/suppl/GSE155649_SLBP_1000_48hr_merged_a0_b0_e0.01.fwd.sorted.rmdup.readfiltered.sorted.bw" -O "GSE155649_SLBP_1000_48hr_merged_a0_b0_e0.01.fwd.sorted.rmdup.readfiltered.sorted.bw"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155649/suppl/GSE155649_SLBP_1000_48hr_merged_a0_b0_e0.01.rev.sorted.rmdup.readfiltered.sorted.bw" -O "GSE155649_SLBP_1000_48hr_merged_a0_b0_e0.01.rev.sorted.rmdup.readfiltered.sorted.bw"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155649/suppl/GSE155649_SLBP_1000_72hr_merged_a0_b0_e0.01.bed.gz" -O "GSE155649_SLBP_1000_72hr_merged_a0_b0_e0.01.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155649/suppl/GSE155649_SLBP_1000_72hr_merged_a0_b0_e0.01.fwd.sorted.rmdup.readfiltered.sorted.bw" -O "GSE155649_SLBP_1000_72hr_merged_a0_b0_e0.01.fwd.sorted.rmdup.readfiltered.sorted.bw"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155649/suppl/GSE155649_SLBP_1000_72hr_merged_a0_b0_e0.01.rev.sorted.rmdup.readfiltered.sorted.bw" -O "GSE155649_SLBP_1000_72hr_merged_a0_b0_e0.01.rev.sorted.rmdup.readfiltered.sorted.bw"

# --- SRA run files ---
# Tip: use 'fasterq-dump' from SRA Toolkit for FASTQ conversion
#      with optional renaming to original submitted FASTQ names.
# Set to 1 to rename SRR outputs (e.g. SRR_1.fastq.gz -> sample_R1.fastq.gz)
RENAME_SRA_TO_ORIGINAL=1

_compress_if_exists() {
  local stem="$1"
  if [ -f "${stem}.fastq" ]; then
    gzip -f "${stem}.fastq"
    echo "${stem}.fastq.gz"
    return 0
  fi
  if [ -f "${stem}.fq" ]; then
    gzip -f "${stem}.fq"
    echo "${stem}.fq.gz"
    return 0
  fi
  return 1
}

# Option A: Download via SRA Toolkit (recommended)
fasterq-dump --split-files "SRR12382153"
gz1="$(_compress_if_exists 'SRR12382153_1' || true)"
gz2="$(_compress_if_exists 'SRR12382153_2' || true)"
gzs="$(_compress_if_exists 'SRR12382153' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ApoControl-0_S7_L001_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382154"
gz1="$(_compress_if_exists 'SRR12382154_1' || true)"
gz2="$(_compress_if_exists 'SRR12382154_2' || true)"
gzs="$(_compress_if_exists 'SRR12382154' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ApoControl-50_S14_L002_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382155"
gz1="$(_compress_if_exists 'SRR12382155_1' || true)"
gz2="$(_compress_if_exists 'SRR12382155_2' || true)"
gzs="$(_compress_if_exists 'SRR12382155' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ApoControl-1000_S21_L002_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382156"
gz1="$(_compress_if_exists 'SRR12382156_1' || true)"
gz2="$(_compress_if_exists 'SRR12382156_2' || true)"
gzs="$(_compress_if_exists 'SRR12382156' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample1_S23_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382157"
gz1="$(_compress_if_exists 'SRR12382157_1' || true)"
gz2="$(_compress_if_exists 'SRR12382157_2' || true)"
gzs="$(_compress_if_exists 'SRR12382157' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample2_S24_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382158"
gz1="$(_compress_if_exists 'SRR12382158_1' || true)"
gz2="$(_compress_if_exists 'SRR12382158_2' || true)"
gzs="$(_compress_if_exists 'SRR12382158' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_3_S57_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382159"
gz1="$(_compress_if_exists 'SRR12382159_1' || true)"
gz2="$(_compress_if_exists 'SRR12382159_2' || true)"
gzs="$(_compress_if_exists 'SRR12382159' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample4_S25_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382160"
gz1="$(_compress_if_exists 'SRR12382160_1' || true)"
gz2="$(_compress_if_exists 'SRR12382160_2' || true)"
gzs="$(_compress_if_exists 'SRR12382160' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample5_S26_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382161"
gz1="$(_compress_if_exists 'SRR12382161_1' || true)"
gz2="$(_compress_if_exists 'SRR12382161_2' || true)"
gzs="$(_compress_if_exists 'SRR12382161' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_6_S58_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382162"
gz1="$(_compress_if_exists 'SRR12382162_1' || true)"
gz2="$(_compress_if_exists 'SRR12382162_2' || true)"
gzs="$(_compress_if_exists 'SRR12382162' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample7_S27_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382163"
gz1="$(_compress_if_exists 'SRR12382163_1' || true)"
gz2="$(_compress_if_exists 'SRR12382163_2' || true)"
gzs="$(_compress_if_exists 'SRR12382163' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample8_S28_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382164"
gz1="$(_compress_if_exists 'SRR12382164_1' || true)"
gz2="$(_compress_if_exists 'SRR12382164_2' || true)"
gzs="$(_compress_if_exists 'SRR12382164' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_9_S59_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382165"
gz1="$(_compress_if_exists 'SRR12382165_1' || true)"
gz2="$(_compress_if_exists 'SRR12382165_2' || true)"
gzs="$(_compress_if_exists 'SRR12382165' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_10_S60_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382166"
gz1="$(_compress_if_exists 'SRR12382166_1' || true)"
gz2="$(_compress_if_exists 'SRR12382166_2' || true)"
gzs="$(_compress_if_exists 'SRR12382166' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample11_S29_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382167"
gz1="$(_compress_if_exists 'SRR12382167_1' || true)"
gz2="$(_compress_if_exists 'SRR12382167_2' || true)"
gzs="$(_compress_if_exists 'SRR12382167' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample12_S30_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382168"
gz1="$(_compress_if_exists 'SRR12382168_1' || true)"
gz2="$(_compress_if_exists 'SRR12382168_2' || true)"
gzs="$(_compress_if_exists 'SRR12382168' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample13_S31_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382169"
gz1="$(_compress_if_exists 'SRR12382169_1' || true)"
gz2="$(_compress_if_exists 'SRR12382169_2' || true)"
gzs="$(_compress_if_exists 'SRR12382169' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample14_S13_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382170"
gz1="$(_compress_if_exists 'SRR12382170_1' || true)"
gz2="$(_compress_if_exists 'SRR12382170_2' || true)"
gzs="$(_compress_if_exists 'SRR12382170' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Apobec_plusT_1_S30_L003_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382171"
gz1="$(_compress_if_exists 'SRR12382171_1' || true)"
gz2="$(_compress_if_exists 'SRR12382171_2' || true)"
gzs="$(_compress_if_exists 'SRR12382171' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Apobec_plusT_2_S31_L003_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382172"
gz1="$(_compress_if_exists 'SRR12382172_1' || true)"
gz2="$(_compress_if_exists 'SRR12382172_2' || true)"
gzs="$(_compress_if_exists 'SRR12382172' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Apobec-T_1_S28_L003_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382173"
gz1="$(_compress_if_exists 'SRR12382173_1' || true)"
gz2="$(_compress_if_exists 'SRR12382173_2' || true)"
gzs="$(_compress_if_exists 'SRR12382173' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Apobec-T_2_S29_L003_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382174"
gz1="$(_compress_if_exists 'SRR12382174_1' || true)"
gz2="$(_compress_if_exists 'SRR12382174_2' || true)"
gzs="$(_compress_if_exists 'SRR12382174' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "RBFOX2-0_S6_L001_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382175"
gz1="$(_compress_if_exists 'SRR12382175_1' || true)"
gz2="$(_compress_if_exists 'SRR12382175_2' || true)"
gzs="$(_compress_if_exists 'SRR12382175' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "RBFOX2-50_S13_L002_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382176"
gz1="$(_compress_if_exists 'SRR12382176_1' || true)"
gz2="$(_compress_if_exists 'SRR12382176_2' || true)"
gzs="$(_compress_if_exists 'SRR12382176' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "RBFOX2-1000_S20_L002_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382177"
gz1="$(_compress_if_exists 'SRR12382177_1' || true)"
gz2="$(_compress_if_exists 'SRR12382177_2' || true)"
gzs="$(_compress_if_exists 'SRR12382177' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample15_S14_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382178"
gz1="$(_compress_if_exists 'SRR12382178_1' || true)"
gz2="$(_compress_if_exists 'SRR12382178_2' || true)"
gzs="$(_compress_if_exists 'SRR12382178' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample16_S32_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382179"
gz1="$(_compress_if_exists 'SRR12382179_1' || true)"
gz2="$(_compress_if_exists 'SRR12382179_2' || true)"
gzs="$(_compress_if_exists 'SRR12382179' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample17_S15_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382180"
gz1="$(_compress_if_exists 'SRR12382180_1' || true)"
gz2="$(_compress_if_exists 'SRR12382180_2' || true)"
gzs="$(_compress_if_exists 'SRR12382180' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample18_S16_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382181"
gz1="$(_compress_if_exists 'SRR12382181_1' || true)"
gz2="$(_compress_if_exists 'SRR12382181_2' || true)"
gzs="$(_compress_if_exists 'SRR12382181' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample19_S17_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382182"
gz1="$(_compress_if_exists 'SRR12382182_1' || true)"
gz2="$(_compress_if_exists 'SRR12382182_2' || true)"
gzs="$(_compress_if_exists 'SRR12382182' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample20_S18_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382183"
gz1="$(_compress_if_exists 'SRR12382183_1' || true)"
gz2="$(_compress_if_exists 'SRR12382183_2' || true)"
gzs="$(_compress_if_exists 'SRR12382183' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample21_S33_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382184"
gz1="$(_compress_if_exists 'SRR12382184_1' || true)"
gz2="$(_compress_if_exists 'SRR12382184_2' || true)"
gzs="$(_compress_if_exists 'SRR12382184' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample22_S34_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382185"
gz1="$(_compress_if_exists 'SRR12382185_1' || true)"
gz2="$(_compress_if_exists 'SRR12382185_2' || true)"
gzs="$(_compress_if_exists 'SRR12382185' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample23_S35_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382186"
gz1="$(_compress_if_exists 'SRR12382186_1' || true)"
gz2="$(_compress_if_exists 'SRR12382186_2' || true)"
gzs="$(_compress_if_exists 'SRR12382186' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample24_S36_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382187"
gz1="$(_compress_if_exists 'SRR12382187_1' || true)"
gz2="$(_compress_if_exists 'SRR12382187_2' || true)"
gzs="$(_compress_if_exists 'SRR12382187' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample25_S19_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382188"
gz1="$(_compress_if_exists 'SRR12382188_1' || true)"
gz2="$(_compress_if_exists 'SRR12382188_2' || true)"
gzs="$(_compress_if_exists 'SRR12382188' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample26_S20_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382189"
gz1="$(_compress_if_exists 'SRR12382189_1' || true)"
gz2="$(_compress_if_exists 'SRR12382189_2' || true)"
gzs="$(_compress_if_exists 'SRR12382189' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample27_S37_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382190"
gz1="$(_compress_if_exists 'SRR12382190_1' || true)"
gz2="$(_compress_if_exists 'SRR12382190_2' || true)"
gzs="$(_compress_if_exists 'SRR12382190' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample28_S21_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382191"
gz1="$(_compress_if_exists 'SRR12382191_1' || true)"
gz2="$(_compress_if_exists 'SRR12382191_2' || true)"
gzs="$(_compress_if_exists 'SRR12382191' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "SLBP_0_72hr_A_merged_R1.fastq.gz"
fi

fasterq-dump --split-files "SRR12382192"
gz1="$(_compress_if_exists 'SRR12382192_1' || true)"
gz2="$(_compress_if_exists 'SRR12382192_2' || true)"
gzs="$(_compress_if_exists 'SRR12382192' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "SLBP_0_72hr_B_merged_R1.fastq.gz"
fi

fasterq-dump --split-files "SRR12382193"
gz1="$(_compress_if_exists 'SRR12382193_1' || true)"
gz2="$(_compress_if_exists 'SRR12382193_2' || true)"
gzs="$(_compress_if_exists 'SRR12382193' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "SLBP_0_72hr_C_merged_R1.fastq.gz"
fi

fasterq-dump --split-files "SRR12382194"
gz1="$(_compress_if_exists 'SRR12382194_1' || true)"
gz2="$(_compress_if_exists 'SRR12382194_2' || true)"
gzs="$(_compress_if_exists 'SRR12382194' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "SLBP_1000_72hr_A_merged_R1.fastq.gz"
fi

fasterq-dump --split-files "SRR12382195"
gz1="$(_compress_if_exists 'SRR12382195_1' || true)"
gz2="$(_compress_if_exists 'SRR12382195_2' || true)"
gzs="$(_compress_if_exists 'SRR12382195' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "SLBP_1000_72hr_B_merged_R1.fastq.gz"
fi

fasterq-dump --split-files "SRR12382196"
gz1="$(_compress_if_exists 'SRR12382196_1' || true)"
gz2="$(_compress_if_exists 'SRR12382196_2' || true)"
gzs="$(_compress_if_exists 'SRR12382196' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "SLBP_1000_72hr_C_merged_R1.fastq.gz"
fi

fasterq-dump --split-files "SRR12382197"
gz1="$(_compress_if_exists 'SRR12382197_1' || true)"
gz2="$(_compress_if_exists 'SRR12382197_2' || true)"
gzs="$(_compress_if_exists 'SRR12382197' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "SLBP_0_48hr_A_merged_R1.fastq.gz"
fi

fasterq-dump --split-files "SRR12382198"
gz1="$(_compress_if_exists 'SRR12382198_1' || true)"
gz2="$(_compress_if_exists 'SRR12382198_2' || true)"
gzs="$(_compress_if_exists 'SRR12382198' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "SLBP_0_48hr_B_merged_R1.fastq.gz"
fi

fasterq-dump --split-files "SRR12382199"
gz1="$(_compress_if_exists 'SRR12382199_1' || true)"
gz2="$(_compress_if_exists 'SRR12382199_2' || true)"
gzs="$(_compress_if_exists 'SRR12382199' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "SLBP_0_48hr_C_merged_R1.fastq.gz"
fi

fasterq-dump --split-files "SRR12382200"
gz1="$(_compress_if_exists 'SRR12382200_1' || true)"
gz2="$(_compress_if_exists 'SRR12382200_2' || true)"
gzs="$(_compress_if_exists 'SRR12382200' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Tia1_0ng_1_S40_L003_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382201"
gz1="$(_compress_if_exists 'SRR12382201_1' || true)"
gz2="$(_compress_if_exists 'SRR12382201_2' || true)"
gzs="$(_compress_if_exists 'SRR12382201' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Tia1_0ng_2_S41_L003_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382202"
gz1="$(_compress_if_exists 'SRR12382202_1' || true)"
gz2="$(_compress_if_exists 'SRR12382202_2' || true)"
gzs="$(_compress_if_exists 'SRR12382202' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Tia1_50ng_1_S42_L003_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382203"
gz1="$(_compress_if_exists 'SRR12382203_1' || true)"
gz2="$(_compress_if_exists 'SRR12382203_2' || true)"
gzs="$(_compress_if_exists 'SRR12382203' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Tia1_50ng_2_S13_L001_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382204"
gz1="$(_compress_if_exists 'SRR12382204_1' || true)"
gz2="$(_compress_if_exists 'SRR12382204_2' || true)"
gzs="$(_compress_if_exists 'SRR12382204' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Tia1_1000ng_1_S14_L001_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382205"
gz1="$(_compress_if_exists 'SRR12382205_1' || true)"
gz2="$(_compress_if_exists 'SRR12382205_2' || true)"
gzs="$(_compress_if_exists 'SRR12382205' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Tia1_1000ng_2_S27_L002_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382206"
gz1="$(_compress_if_exists 'SRR12382206_1' || true)"
gz2="$(_compress_if_exists 'SRR12382206_2' || true)"
gzs="$(_compress_if_exists 'SRR12382206' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "RPS2-0_S4_L001_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382207"
gz1="$(_compress_if_exists 'SRR12382207_1' || true)"
gz2="$(_compress_if_exists 'SRR12382207_2' || true)"
gzs="$(_compress_if_exists 'SRR12382207' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "RPS2-50_S11_L001_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382208"
gz1="$(_compress_if_exists 'SRR12382208_1' || true)"
gz2="$(_compress_if_exists 'SRR12382208_2' || true)"
gzs="$(_compress_if_exists 'SRR12382208' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "RPS2-1000_S18_L002_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382209"
gz1="$(_compress_if_exists 'SRR12382209_1' || true)"
gz2="$(_compress_if_exists 'SRR12382209_2' || true)"
gzs="$(_compress_if_exists 'SRR12382209' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample29_S38_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382210"
gz1="$(_compress_if_exists 'SRR12382210_1' || true)"
gz2="$(_compress_if_exists 'SRR12382210_2' || true)"
gzs="$(_compress_if_exists 'SRR12382210' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample30_S39_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382211"
gz1="$(_compress_if_exists 'SRR12382211_1' || true)"
gz2="$(_compress_if_exists 'SRR12382211_2' || true)"
gzs="$(_compress_if_exists 'SRR12382211' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample31_S40_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382212"
gz1="$(_compress_if_exists 'SRR12382212_1' || true)"
gz2="$(_compress_if_exists 'SRR12382212_2' || true)"
gzs="$(_compress_if_exists 'SRR12382212' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample32_S22_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382213"
gz1="$(_compress_if_exists 'SRR12382213_1' || true)"
gz2="$(_compress_if_exists 'SRR12382213_2' || true)"
gzs="$(_compress_if_exists 'SRR12382213' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_33_S61_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382214"
gz1="$(_compress_if_exists 'SRR12382214_1' || true)"
gz2="$(_compress_if_exists 'SRR12382214_2' || true)"
gzs="$(_compress_if_exists 'SRR12382214' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_34_S62_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382215"
gz1="$(_compress_if_exists 'SRR12382215_1' || true)"
gz2="$(_compress_if_exists 'SRR12382215_2' || true)"
gzs="$(_compress_if_exists 'SRR12382215' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_35_S63_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382216"
gz1="$(_compress_if_exists 'SRR12382216_1' || true)"
gz2="$(_compress_if_exists 'SRR12382216_2' || true)"
gzs="$(_compress_if_exists 'SRR12382216' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_36_S64_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382217"
gz1="$(_compress_if_exists 'SRR12382217_1' || true)"
gz2="$(_compress_if_exists 'SRR12382217_2' || true)"
gzs="$(_compress_if_exists 'SRR12382217' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_37_S65_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382218"
gz1="$(_compress_if_exists 'SRR12382218_1' || true)"
gz2="$(_compress_if_exists 'SRR12382218_2' || true)"
gzs="$(_compress_if_exists 'SRR12382218' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_38_S66_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382219"
gz1="$(_compress_if_exists 'SRR12382219_1' || true)"
gz2="$(_compress_if_exists 'SRR12382219_2' || true)"
gzs="$(_compress_if_exists 'SRR12382219' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_39_S67_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382220"
gz1="$(_compress_if_exists 'SRR12382220_1' || true)"
gz2="$(_compress_if_exists 'SRR12382220_2' || true)"
gzs="$(_compress_if_exists 'SRR12382220' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_40_S68_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382221"
gz1="$(_compress_if_exists 'SRR12382221_1' || true)"
gz2="$(_compress_if_exists 'SRR12382221_2' || true)"
gzs="$(_compress_if_exists 'SRR12382221' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample41_S41_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382222"
gz1="$(_compress_if_exists 'SRR12382222_1' || true)"
gz2="$(_compress_if_exists 'SRR12382222_2' || true)"
gzs="$(_compress_if_exists 'SRR12382222' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "Sample42_S42_merged.fastq.gz"
fi

fasterq-dump --split-files "SRR12382223"
gz1="$(_compress_if_exists 'SRR12382223_1' || true)"
gz2="$(_compress_if_exists 'SRR12382223_2' || true)"
gzs="$(_compress_if_exists 'SRR12382223' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "RPS3-0_S5_L001_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382225"
gz1="$(_compress_if_exists 'SRR12382225_1' || true)"
gz2="$(_compress_if_exists 'SRR12382225_2' || true)"
gzs="$(_compress_if_exists 'SRR12382225' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "RPS3-1000_S19_L002_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382226"
gz1="$(_compress_if_exists 'SRR12382226_1' || true)"
gz2="$(_compress_if_exists 'SRR12382226_2' || true)"
gzs="$(_compress_if_exists 'SRR12382226' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TI_55_S13_L001_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382227"
gz1="$(_compress_if_exists 'SRR12382227_1' || true)"
gz2="$(_compress_if_exists 'SRR12382227_2' || true)"
gzs="$(_compress_if_exists 'SRR12382227' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TI_56_S14_L001_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382228"
gz1="$(_compress_if_exists 'SRR12382228_1' || true)"
gz2="$(_compress_if_exists 'SRR12382228_2' || true)"
gzs="$(_compress_if_exists 'SRR12382228' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TI_58_S15_L001_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12382229"
gz1="$(_compress_if_exists 'SRR12382229_1' || true)"
gz2="$(_compress_if_exists 'SRR12382229_2' || true)"
gzs="$(_compress_if_exists 'SRR12382229' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TI_59_S16_L001_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12774694"
gz1="$(_compress_if_exists 'SRR12774694_1' || true)"
gz2="$(_compress_if_exists 'SRR12774694_2' || true)"
gzs="$(_compress_if_exists 'SRR12774694' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "TI_8_S6_L001_R1_001.fastq.gz"
fi


# Option B: Direct download (larger .sra files)
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382153/SRR12382153"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382154/SRR12382154"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382155/SRR12382155"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382156/SRR12382156"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382157/SRR12382157"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382158/SRR12382158"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382159/SRR12382159"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382160/SRR12382160"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382161/SRR12382161"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382162/SRR12382162"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382163/SRR12382163"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382164/SRR12382164"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382165/SRR12382165"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382166/SRR12382166"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382167/SRR12382167"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382168/SRR12382168"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382169/SRR12382169"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382170/SRR12382170"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382171/SRR12382171"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382172/SRR12382172"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382173/SRR12382173"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382174/SRR12382174"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382175/SRR12382175"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382176/SRR12382176"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382177/SRR12382177"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382178/SRR12382178"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382179/SRR12382179"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382180/SRR12382180"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382181/SRR12382181"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382182/SRR12382182"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382183/SRR12382183"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382184/SRR12382184"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382185/SRR12382185"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382186/SRR12382186"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382187/SRR12382187"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382188/SRR12382188"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382189/SRR12382189"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382190/SRR12382190"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382191/SRR12382191"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382192/SRR12382192"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382193/SRR12382193"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382194/SRR12382194"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382195/SRR12382195"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382196/SRR12382196"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382197/SRR12382197"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382198/SRR12382198"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382199/SRR12382199"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382200/SRR12382200"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382201/SRR12382201"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382202/SRR12382202"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382203/SRR12382203"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382204/SRR12382204"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382205/SRR12382205"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382206/SRR12382206"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382207/SRR12382207"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382208/SRR12382208"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382209/SRR12382209"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382210/SRR12382210"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382211/SRR12382211"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382212/SRR12382212"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382213/SRR12382213"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382214/SRR12382214"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382215/SRR12382215"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382216/SRR12382216"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382217/SRR12382217"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382218/SRR12382218"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382219/SRR12382219"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382220/SRR12382220"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382221/SRR12382221"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382222/SRR12382222"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382223/SRR12382223"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382225/SRR12382225"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382226/SRR12382226"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382227/SRR12382227"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382228/SRR12382228"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382229/SRR12382229"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12774694/SRR12774694"

# --- Additional data files ---
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382170/SRR12382170"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382171/SRR12382171"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382172/SRR12382172"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382173/SRR12382173"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382153/SRR12382153"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382155/SRR12382155"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382154/SRR12382154"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382174/SRR12382174"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382176/SRR12382176"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382175/SRR12382175"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382206/SRR12382206"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382208/SRR12382208"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382207/SRR12382207"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382223/SRR12382223"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382225/SRR12382225"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382165/SRR12382165"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382166/SRR12382166"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382167/SRR12382167"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382168/SRR12382168"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382169/SRR12382169"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382177/SRR12382177"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382178/SRR12382178"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382179/SRR12382179"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382180/SRR12382180"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382181/SRR12382181"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382156/SRR12382156"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382182/SRR12382182"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382183/SRR12382183"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382184/SRR12382184"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382185/SRR12382185"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382186/SRR12382186"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382187/SRR12382187"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382188/SRR12382188"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382189/SRR12382189"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382190/SRR12382190"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382209/SRR12382209"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382157/SRR12382157"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382210/SRR12382210"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382211/SRR12382211"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382212/SRR12382212"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382213/SRR12382213"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382214/SRR12382214"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382215/SRR12382215"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382216/SRR12382216"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382217/SRR12382217"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382218/SRR12382218"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382219/SRR12382219"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382158/SRR12382158"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382220/SRR12382220"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382221/SRR12382221"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382222/SRR12382222"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382159/SRR12382159"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382160/SRR12382160"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382161/SRR12382161"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382162/SRR12382162"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382163/SRR12382163"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382164/SRR12382164"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382197/SRR12382197"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382198/SRR12382198"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382199/SRR12382199"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382191/SRR12382191"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382192/SRR12382192"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382193/SRR12382193"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382194/SRR12382194"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382195/SRR12382195"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382196/SRR12382196"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382226/SRR12382226"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382227/SRR12382227"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382228/SRR12382228"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382229/SRR12382229"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382200/SRR12382200"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382201/SRR12382201"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382204/SRR12382204"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382205/SRR12382205"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382202/SRR12382202"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12382203/SRR12382203"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12774694/SRR12774694"

echo "Download complete. Files saved to $OUTDIR"