GSE19138
GSE GEOComprehensive discovery of endogenous Argonaute binding sites in C. elegans
Organism:
6239
Platform:
GPL200
Samples:
6
Experiment Types:
Expression profiling by array
Submitted:
Nov 23 2009
Last Updated:
Jul 06 2016
Status:
Public on Nov 24 2009
Contact:
Gene,,Yeo (UCSD)
Relations
BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA120681
Summary
Comprehensive discovery of endogenous Argonaute binding sites in C. elegans
Overall Design
Total RNA were extracted from whole alg-1(gk214) (alg-1(-)) and N2 (wildtype) worms and used to compare the expression profiles of genes that were targeted by ALG-1 protein.
Analysis (1 step)
View Data Processing
Processing steps for GSE19138
- C. elegans GeneChip arrays were analyzed by using affymetrix power tools (command line arguments apt-probeset-summarize -a rma-sketch -a plier-mm-sketch -d Celegans.CDF)
Supplementary Files (1)
GSE19138_RAW.tar
Download
Dataset Citations (1)
Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans.
PMID 20062054
· 2010
· Nature structural & molecular biology
Dimitrios G Zisoulis, Michael T Lovci, Melissa L Wilbert, Kasey R Hutt, Tiffany Y Liang, Amy E Pasquinelli, Gene W Yeo
Linked Publications (1)
Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans.
Nature structural & molecular biology · 2010