#!/usr/bin/env bash
# Bulk download script for GSE64078
# Generated from Yeo Lab Publications Database
# Total files: 120

OUTDIR="GSE64078"
mkdir -p "$OUTDIR"
cd "$OUTDIR"

# --- GEO supplementary files ---
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE64nnn/GSE64078/suppl/GSE64078_RAW.tar" -O "GSE64078_RAW.tar"

# --- SRA run files ---
# Tip: use 'fasterq-dump' from SRA Toolkit for FASTQ conversion
#      with optional renaming to original submitted FASTQ names.
# Set to 1 to rename SRR outputs (e.g. SRR_1.fastq.gz -> sample_R1.fastq.gz)
RENAME_SRA_TO_ORIGINAL=1

_compress_if_exists() {
  local stem="$1"
  if [ -f "${stem}.fastq" ]; then
    gzip -f "${stem}.fastq"
    echo "${stem}.fastq.gz"
    return 0
  fi
  if [ -f "${stem}.fq" ]; then
    gzip -f "${stem}.fq"
    echo "${stem}.fq.gz"
    return 0
  fi
  return 1
}

# Option A: Download via SRA Toolkit (recommended)
fasterq-dump --split-files "SRR1708193"
gz1="$(_compress_if_exists 'SRR1708193_1' || true)"
gz2="$(_compress_if_exists 'SRR1708193_2' || true)"
gzs="$(_compress_if_exists 'SRR1708193' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FLP-IN_parental_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708194"
gz1="$(_compress_if_exists 'SRR1708194_1' || true)"
gz2="$(_compress_if_exists 'SRR1708194_2' || true)"
gzs="$(_compress_if_exists 'SRR1708194' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FLP-IN_parental_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708195"
gz1="$(_compress_if_exists 'SRR1708195_1' || true)"
gz2="$(_compress_if_exists 'SRR1708195_2' || true)"
gzs="$(_compress_if_exists 'SRR1708195' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FLP-IN_parental_3.fastq.gz"
fi

fasterq-dump --split-files "SRR1708196"
gz1="$(_compress_if_exists 'SRR1708196_1' || true)"
gz2="$(_compress_if_exists 'SRR1708196_2' || true)"
gzs="$(_compress_if_exists 'SRR1708196' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FLP-IN_FUS-RNAi_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708197"
gz1="$(_compress_if_exists 'SRR1708197_1' || true)"
gz2="$(_compress_if_exists 'SRR1708197_2' || true)"
gzs="$(_compress_if_exists 'SRR1708197' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FLP-IN_FUS-RNAi_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708198"
gz1="$(_compress_if_exists 'SRR1708198_1' || true)"
gz2="$(_compress_if_exists 'SRR1708198_2' || true)"
gzs="$(_compress_if_exists 'SRR1708198' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FLP-IN_FUS-RNAi_3.fastq.gz"
fi

fasterq-dump --split-files "SRR1708199"
gz1="$(_compress_if_exists 'SRR1708199_1' || true)"
gz2="$(_compress_if_exists 'SRR1708199_2' || true)"
gzs="$(_compress_if_exists 'SRR1708199' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FLP-IN_WT-FUS_FUS-RNAi_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708200"
gz1="$(_compress_if_exists 'SRR1708200_1' || true)"
gz2="$(_compress_if_exists 'SRR1708200_2' || true)"
gzs="$(_compress_if_exists 'SRR1708200' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FLP-IN_WT-FUS_FUS-RNAi_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708201"
gz1="$(_compress_if_exists 'SRR1708201_1' || true)"
gz2="$(_compress_if_exists 'SRR1708201_2' || true)"
gzs="$(_compress_if_exists 'SRR1708201' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FLP-IN_WT-FUS_FUS-RNAi_3.fastq.gz"
fi

fasterq-dump --split-files "SRR1708202"
gz1="$(_compress_if_exists 'SRR1708202_1' || true)"
gz2="$(_compress_if_exists 'SRR1708202_2' || true)"
gzs="$(_compress_if_exists 'SRR1708202' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FLP-IN_R495X_FUS-RNAi_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708203"
gz1="$(_compress_if_exists 'SRR1708203_1' || true)"
gz2="$(_compress_if_exists 'SRR1708203_2' || true)"
gzs="$(_compress_if_exists 'SRR1708203' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FLP-IN_R495X_FUS-RNAi_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708204"
gz1="$(_compress_if_exists 'SRR1708204_1' || true)"
gz2="$(_compress_if_exists 'SRR1708204_2' || true)"
gzs="$(_compress_if_exists 'SRR1708204' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FLP-IN_R495X_FUS-RNAi_3.fastq.gz"
fi

fasterq-dump --split-files "SRR1708205"
gz1="$(_compress_if_exists 'SRR1708205_1' || true)"
gz2="$(_compress_if_exists 'SRR1708205_2' || true)"
gzs="$(_compress_if_exists 'SRR1708205' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FLP-IN_R514G_FUS-RNAi_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708206"
gz1="$(_compress_if_exists 'SRR1708206_1' || true)"
gz2="$(_compress_if_exists 'SRR1708206_2' || true)"
gzs="$(_compress_if_exists 'SRR1708206' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FLP-IN_R514G_FUS-RNAi_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708207"
gz1="$(_compress_if_exists 'SRR1708207_1' || true)"
gz2="$(_compress_if_exists 'SRR1708207_2' || true)"
gzs="$(_compress_if_exists 'SRR1708207' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FLP-IN_R514G_FUS-RNAi_3.fastq.gz"
fi

fasterq-dump --split-files "SRR1708208"
gz1="$(_compress_if_exists 'SRR1708208_1' || true)"
gz2="$(_compress_if_exists 'SRR1708208_2' || true)"
gzs="$(_compress_if_exists 'SRR1708208' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FLP-IN_R521G_FUS-RNAi_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708209"
gz1="$(_compress_if_exists 'SRR1708209_1' || true)"
gz2="$(_compress_if_exists 'SRR1708209_2' || true)"
gzs="$(_compress_if_exists 'SRR1708209' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FLP-IN_R521G_FUS-RNAi_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708210"
gz1="$(_compress_if_exists 'SRR1708210_1' || true)"
gz2="$(_compress_if_exists 'SRR1708210_2' || true)"
gzs="$(_compress_if_exists 'SRR1708210' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FLP-IN_R521G_FUS-RNAi_3.fastq.gz"
fi

fasterq-dump --split-files "SRR1708211"
gz1="$(_compress_if_exists 'SRR1708211_1' || true)"
gz2="$(_compress_if_exists 'SRR1708211_2' || true)"
gzs="$(_compress_if_exists 'SRR1708211' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FLP-IN_P525L_FUS-RNAi_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708212"
gz1="$(_compress_if_exists 'SRR1708212_1' || true)"
gz2="$(_compress_if_exists 'SRR1708212_2' || true)"
gzs="$(_compress_if_exists 'SRR1708212' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FLP-IN_P525L_FUS-RNAi_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708213"
gz1="$(_compress_if_exists 'SRR1708213_1' || true)"
gz2="$(_compress_if_exists 'SRR1708213_2' || true)"
gzs="$(_compress_if_exists 'SRR1708213' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FLP-IN_P525L_FUS-RNAi_3.fastq.gz"
fi

fasterq-dump --split-files "SRR1708214"
gz1="$(_compress_if_exists 'SRR1708214_1' || true)"
gz2="$(_compress_if_exists 'SRR1708214_2' || true)"
gzs="$(_compress_if_exists 'SRR1708214' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Fibroblasts_Ctrl-2_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708215"
gz1="$(_compress_if_exists 'SRR1708215_1' || true)"
gz2="$(_compress_if_exists 'SRR1708215_2' || true)"
gzs="$(_compress_if_exists 'SRR1708215' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Fibroblasts_Ctrl-2_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708216"
gz1="$(_compress_if_exists 'SRR1708216_1' || true)"
gz2="$(_compress_if_exists 'SRR1708216_2' || true)"
gzs="$(_compress_if_exists 'SRR1708216' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Fibroblasts_Ctrl-3_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708217"
gz1="$(_compress_if_exists 'SRR1708217_1' || true)"
gz2="$(_compress_if_exists 'SRR1708217_2' || true)"
gzs="$(_compress_if_exists 'SRR1708217' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Fibroblasts_Ctrl-3_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708218"
gz1="$(_compress_if_exists 'SRR1708218_1' || true)"
gz2="$(_compress_if_exists 'SRR1708218_2' || true)"
gzs="$(_compress_if_exists 'SRR1708218' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Fibroblasts_Ctrl-1_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708219"
gz1="$(_compress_if_exists 'SRR1708219_1' || true)"
gz2="$(_compress_if_exists 'SRR1708219_2' || true)"
gzs="$(_compress_if_exists 'SRR1708219' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Fibroblasts_Ctrl-1_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708220"
gz1="$(_compress_if_exists 'SRR1708220_1' || true)"
gz2="$(_compress_if_exists 'SRR1708220_2' || true)"
gzs="$(_compress_if_exists 'SRR1708220' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Fibroblast_R521G_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708221"
gz1="$(_compress_if_exists 'SRR1708221_1' || true)"
gz2="$(_compress_if_exists 'SRR1708221_2' || true)"
gzs="$(_compress_if_exists 'SRR1708221' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Fibroblast_R521G_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708222"
gz1="$(_compress_if_exists 'SRR1708222_1' || true)"
gz2="$(_compress_if_exists 'SRR1708222_2' || true)"
gzs="$(_compress_if_exists 'SRR1708222' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Fibroblast_H517Q_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708223"
gz1="$(_compress_if_exists 'SRR1708223_1' || true)"
gz2="$(_compress_if_exists 'SRR1708223_2' || true)"
gzs="$(_compress_if_exists 'SRR1708223' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Fibroblast_H517Q_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708224"
gz1="$(_compress_if_exists 'SRR1708224_1' || true)"
gz2="$(_compress_if_exists 'SRR1708224_2' || true)"
gzs="$(_compress_if_exists 'SRR1708224' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Fibroblast_M511nfs_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708225"
gz1="$(_compress_if_exists 'SRR1708225_1' || true)"
gz2="$(_compress_if_exists 'SRR1708225_2' || true)"
gzs="$(_compress_if_exists 'SRR1708225' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Fibroblast_M511nfs_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708226"
gz1="$(_compress_if_exists 'SRR1708226_1' || true)"
gz2="$(_compress_if_exists 'SRR1708226_2' || true)"
gzs="$(_compress_if_exists 'SRR1708226' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Fibroblasts_Ctrl-2_notreat_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708227"
gz1="$(_compress_if_exists 'SRR1708227_1' || true)"
gz2="$(_compress_if_exists 'SRR1708227_2' || true)"
gzs="$(_compress_if_exists 'SRR1708227' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Fibroblasts_Ctrl-2_notreat_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708228"
gz1="$(_compress_if_exists 'SRR1708228_1' || true)"
gz2="$(_compress_if_exists 'SRR1708228_2' || true)"
gzs="$(_compress_if_exists 'SRR1708228' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Fibroblasts_Ctrl-2_sham-siRNA_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708229"
gz1="$(_compress_if_exists 'SRR1708229_1' || true)"
gz2="$(_compress_if_exists 'SRR1708229_2' || true)"
gzs="$(_compress_if_exists 'SRR1708229' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Fibroblasts_Ctrl-2_sham-siRNA_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708230"
gz1="$(_compress_if_exists 'SRR1708230_1' || true)"
gz2="$(_compress_if_exists 'SRR1708230_2' || true)"
gzs="$(_compress_if_exists 'SRR1708230' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Fibroblasts_Ctrl-2_FUS-siRNA_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708231"
gz1="$(_compress_if_exists 'SRR1708231_1' || true)"
gz2="$(_compress_if_exists 'SRR1708231_2' || true)"
gzs="$(_compress_if_exists 'SRR1708231' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Fibroblasts_Ctrl-2_FUS-siRNA_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708232"
gz1="$(_compress_if_exists 'SRR1708232_1' || true)"
gz2="$(_compress_if_exists 'SRR1708232_2' || true)"
gzs="$(_compress_if_exists 'SRR1708232' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Fibroblasts_Ctrl-2_SMN-siRNA_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708233"
gz1="$(_compress_if_exists 'SRR1708233_1' || true)"
gz2="$(_compress_if_exists 'SRR1708233_2' || true)"
gzs="$(_compress_if_exists 'SRR1708233' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Fibroblasts_Ctrl-2_SMN-siRNA_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708234"
gz1="$(_compress_if_exists 'SRR1708234_1' || true)"
gz2="$(_compress_if_exists 'SRR1708234_2' || true)"
gzs="$(_compress_if_exists 'SRR1708234' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Fibroblasts_Ctrl-1_notreat_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708235"
gz1="$(_compress_if_exists 'SRR1708235_1' || true)"
gz2="$(_compress_if_exists 'SRR1708235_2' || true)"
gzs="$(_compress_if_exists 'SRR1708235' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Fibroblasts_Ctrl-1_notreat_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708236"
gz1="$(_compress_if_exists 'SRR1708236_1' || true)"
gz2="$(_compress_if_exists 'SRR1708236_2' || true)"
gzs="$(_compress_if_exists 'SRR1708236' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Fibroblasts_Ctrl-1_sham-siRNA_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708237"
gz1="$(_compress_if_exists 'SRR1708237_1' || true)"
gz2="$(_compress_if_exists 'SRR1708237_2' || true)"
gzs="$(_compress_if_exists 'SRR1708237' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Fibroblasts_Ctrl-1_sham-siRNA_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708238"
gz1="$(_compress_if_exists 'SRR1708238_1' || true)"
gz2="$(_compress_if_exists 'SRR1708238_2' || true)"
gzs="$(_compress_if_exists 'SRR1708238' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Fibroblasts_Ctrl-1_FUS-siRNA_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708239"
gz1="$(_compress_if_exists 'SRR1708239_1' || true)"
gz2="$(_compress_if_exists 'SRR1708239_2' || true)"
gzs="$(_compress_if_exists 'SRR1708239' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Fibroblasts_Ctrl-1_FUS-siRNA_2.fastq.gz"
fi

fasterq-dump --split-files "SRR1708240"
gz1="$(_compress_if_exists 'SRR1708240_1' || true)"
gz2="$(_compress_if_exists 'SRR1708240_2' || true)"
gzs="$(_compress_if_exists 'SRR1708240' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Fibroblasts_Ctrl-1_SMN-siRNA_1.fastq.gz"
fi

fasterq-dump --split-files "SRR1708241"
gz1="$(_compress_if_exists 'SRR1708241_1' || true)"
gz2="$(_compress_if_exists 'SRR1708241_2' || true)"
gzs="$(_compress_if_exists 'SRR1708241' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Fibroblasts_Ctrl-1_SMN-siRNA_2.fastq.gz"
fi


# Option B: Direct download (larger .sra files)
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708193/SRR1708193"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708194/SRR1708194"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708195/SRR1708195"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708196/SRR1708196"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708197/SRR1708197"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708198/SRR1708198"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708199/SRR1708199"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708200/SRR1708200"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708201/SRR1708201"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708202/SRR1708202"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708203/SRR1708203"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708204/SRR1708204"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708205/SRR1708205"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708206/SRR1708206"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708207/SRR1708207"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708208/SRR1708208"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708209/SRR1708209"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708210/SRR1708210"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708211/SRR1708211"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708212/SRR1708212"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708213/SRR1708213"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708214/SRR1708214"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708215/SRR1708215"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708216/SRR1708216"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708217/SRR1708217"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708218/SRR1708218"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708219/SRR1708219"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708220/SRR1708220"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708221/SRR1708221"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708222/SRR1708222"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708223/SRR1708223"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708224/SRR1708224"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708225/SRR1708225"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708226/SRR1708226"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708227/SRR1708227"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708228/SRR1708228"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708229/SRR1708229"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708230/SRR1708230"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708231/SRR1708231"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708232/SRR1708232"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708233/SRR1708233"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708234/SRR1708234"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708235/SRR1708235"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708236/SRR1708236"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708237/SRR1708237"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708238/SRR1708238"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708239/SRR1708239"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708240/SRR1708240"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708241/SRR1708241"

# --- Additional data files ---
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708222/SRR1708222"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708223/SRR1708223"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708224/SRR1708224"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708225/SRR1708225"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708220/SRR1708220"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708221/SRR1708221"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708218/SRR1708218"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708219/SRR1708219"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708238/SRR1708238"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708239/SRR1708239"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708234/SRR1708234"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708235/SRR1708235"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR001/708/SRR1708236/SRR1708236.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708236/SRR1708236"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708237/SRR1708237"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708240/SRR1708240"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708241/SRR1708241"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708214/SRR1708214"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708215/SRR1708215"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708230/SRR1708230"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708231/SRR1708231"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708226/SRR1708226"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708227/SRR1708227"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708228/SRR1708228"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708229/SRR1708229"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708232/SRR1708232"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708233/SRR1708233"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708216/SRR1708216"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708217/SRR1708217"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR001/708/SRR1708196/SRR1708196.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708196/SRR1708196"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708197/SRR1708197"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708198/SRR1708198"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708211/SRR1708211"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708212/SRR1708212"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708213/SRR1708213"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708193/SRR1708193"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708194/SRR1708194"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708195/SRR1708195"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708202/SRR1708202"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708203/SRR1708203"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708204/SRR1708204"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708205/SRR1708205"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708206/SRR1708206"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708207/SRR1708207"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708208/SRR1708208"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708209/SRR1708209"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708210/SRR1708210"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708199/SRR1708199"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708200/SRR1708200"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708201/SRR1708201"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708193/SRR1708193"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708194/SRR1708194"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708195/SRR1708195"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708197/SRR1708197"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708199/SRR1708199"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708200/SRR1708200"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708201/SRR1708201"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708202/SRR1708202"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708206/SRR1708206"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708207/SRR1708207"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708209/SRR1708209"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708210/SRR1708210"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708214/SRR1708214"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708219/SRR1708219"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708221/SRR1708221"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708223/SRR1708223"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708228/SRR1708228"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708231/SRR1708231"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1708233/SRR1708233"

echo "Download complete. Files saved to $OUTDIR"