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GSE80039

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Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites [eCLIP - HepG2/K562 cells]

Organism: Homo sapiens
Platform: GPL16791
Samples: 63
Experiment Types:
Other
Submitted: Apr 07 2016
Last Updated: May 15 2019
Status: Public on Apr 07 2016
Contact: Gene,,Yeo (UCSD)

Relations

SubSeries of: GSE77634 BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA317675 SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP072994

Summary

RNA binding proteins (RBPs) play essential roles in cellular physiology by interacting with target RNAs. As defects in protein-RNA recognition lead to human disease, UV-crosslinking and immunoprecipitation (CLIP) of ribonuclear complexes followed by deep sequencing (-seq) is critical in constructing protein-RNA maps to expand our understanding of RBP function. However, current CLIP protocols are technically demanding and involve low complexity libraries that yield squandered sequencing of PCR duplicates and high experimental failure rates. To enable truly large-scale implementation of CLIP-seq, we have developed an enhanced CLIP methodology (eCLIP) that features a decrease of ~10 cycles of requisite amplification with a concomitant >60% decrease in discarded PCR duplicate reads, while maintaining the ability to identify RNA binding with single-nucleotide resolution. By simplifying the generation of paired IgG and size-matched input controls, eCLIP also dramatically improves specificity in discovery of authentic binding sites. To demonstrate that eCLIP enables large-scale and robust profiling of RBPs, 102 eCLIP experiments in biological duplicate for a diverse collection of 74 RBPs in HepG2 and K562 cells were completed (available at https://www.encodeproject.org). We establish that eCLIP is comparable in amplification and sample requirements to ChIP-seq, and enables integrative analysis of diverse RBPs to reveal factor-specific profiles, common artifacts for CLIP experiments and RNA-centric perspectives of RBP activity.

Overall Design

eCLIP-seq in HepG2 and K562 Cells

Analysis (33 steps)

View Data Processing
Processing steps for GSE80039
  1. Library strategy: eCLIP-seq
  2. Takes output from raw files.
  3. Run to trim off both 5’ and 3’ adapters on both reads.
  4. Command: quality-cutoff 6 -m 18 -a NNNNNAGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -g CTTCCGATCTACAAGTT -g CTTCCGATCTTGGTCCT -A AACTTGTAGATCGGA -A AGGACCAAGATCGGA -A ACTTGTAGATCGGAA -A GGACCAAGATCGGAA -A CTTGT AGATCGGAAG -A GACCAAGATCGGAAG -A TTGTAGATCGGAAGA -A ACCAAGATCGGAAGA -A TGTAGATCGGAAGAG -A CCAAGATCGGAAGAG -A GTAGATCGGAAGAGC -A CAAGATCGGAAGAGC -A TAGATCGGAAGAGCG -A AAGATCGGAAGAGCG -A AGATCGGAAGAGCGT -A GATCGGAAGAGCGTC -A ATCGGAAGAGCGTCG -A TCGGAAGAGCGTCGT -A CGGAAGAGCGTCGTG -A GGAAGAGCGTCGTGT -o /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.fastq.gz -p /full/path/to/files/file_R2.C01.fastq.gz.adapterTrim.fastq.gz /full/path/to/files/file_R1.C01.fastq.gz /full/path/to/files/file_R2.C01.fastq.gz > /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.metrics
  5. Takes output from cutadapt round 1.
  6. Run to trim off the 3’ adapters on read 2, to control for double ligation events.
  7. Command: cutadapt -f fastq --match-read-wildcards --times 1 -e 0.1 -O 5 --quality-cutoff 6 -m 18 -A AACTTGTAGATCGGA -A AGGACCAAGATCGGA -A ACTTGTAGATCGGAA -A GGACCAAGATCGGAA -A CTTGTAGATCGGAAG -A GACCAAGATCGGAAG -A TTGTAGATCGGAAGA -A ACCAAGATCGGAAGA -A TGTAGATCGGAAGAG -A CCAAGATCGGAAGAG -A GTAGATCGGAAGAGC -A CAAGATCGGAAGAGC -A TAGATCGGAAGAGCG -A AAGATCGGAAGAGCG -A AGATCGGAAGAGCGT -A GATCGGAAGAGCGTC -A ATCGGAAGAGCGTCG -A TCGGAAGAGCGTCGT -A CGGAAGAGCGTCGTG -A GGAAGAGCGTCGTGT -o /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.round2.fastq.gz -p /full/path/to/files/file_R2.C01.fastq.gz.adapterTrim.round2.fastq.gz /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.fastq.gz /full/path/to/files/file_R2.C01.fastq.gz.adapterTrim.fastq.gz > /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.round2.metrics
  8. Takes output from cutadapt round 2.
Showing first 8 steps.

Supplementary Files (1)

GSE80039_RAW.tar Download
GEO Samples (63)
GSM2111505 GSM2111506 GSM2111507 GSM2111508 GSM2111509 GSM2111510 GSM2111511 GSM2111512 GSM2111513 GSM2111514 GSM2111515 GSM2111516 GSM2111517 GSM2111518 GSM2111519 GSM2111520 GSM2111521 GSM2111522 GSM2111523 GSM2111524 GSM2111525 GSM2111526 GSM2111527 GSM2111528 GSM2111529 GSM2111530 GSM2111531 GSM2111532 GSM2111533 GSM2111534 GSM2111535 GSM2111536 GSM2111537 GSM2111538 GSM2111539 GSM2111540 GSM2111541 GSM2111542 GSM2111543 GSM2111544 GSM2111545 GSM2111546 GSM2111547 GSM2111548 GSM2111549 GSM2111550 GSM2111551 GSM2111552 GSM2111553 GSM2111554 GSM2111555 GSM2111556 GSM2111557 GSM2111558 GSM2111559 GSM2111560 GSM2111561 GSM2111562 GSM2111563 GSM2111564 GSM2111565 GSM2111566 GSM2111567

Dataset Citations (1)

Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP).
PMID 27018577 · 2016 · Nature methods
Eric L Van Nostrand, Gabriel A Pratt, Alexander A Shishkin, Chelsea Gelboin-Burkhart, Mark Y Fang, Balaji Sundararaman, Steven M Blue, Thai B Nguyen, Christine Surka, Keri Elkins, Rebecca Stanton, Frank Rigo, Mitchell Guttman, Gene W Yeo

SRA Experiments (63) and Runs (105)

Total: 56110 MB
SRX1686559 SRP072994 OTHER PAIRED
GSM2111505: ENCLB134VGD; Homo sapiens; OTHER
Sample: SRS1381543
BioProject: PRJNA317675
BioSample: SAMN04623054
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: XRCC6
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346257 9844392 964750416 348.87 311_CLIP_ATTCAGAA-ATAGAGGC_L001_R1.A01_311_01_XRCC6.randomer.fastq.gz… SRA
SRR3346258 3668300 359493400 134.68 311_CLIP_ATTCAGAA-ATAGAGGC_L001_R1.B06_311_01_XRCC6.randomer.fastq.gz… SRA
SRX1686560 SRP072994 OTHER PAIRED
GSM2111506: ENCLB097KHV; Homo sapiens; OTHER
Sample: SRS1381544
BioProject: PRJNA317675
BioSample: SAMN04623055
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: XRCC6
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346259 7570994 741957412 270.58 311_CLIP_ATTCAGAA-ATAGAGGC_L001_R1.C01_311_02_XRCC6.randomer.fastq.gz… SRA
SRR3346260 2253439 220837022 80.96 311_CLIP_ATTCAGAA-ATAGAGGC_L001_R1.D08fixed_311_02_XRCC6.randomer.fas… SRA
SRX1686561 SRP072994 OTHER PAIRED
GSM2111507: ENCSR044NGV; Homo sapiens; OTHER
Sample: SRS1381541
BioProject: PRJNA317675
BioSample: SAMN04623056
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346261 19348632 2031606360 760.63 311_INPUT_GAATTCGT-ATAGAGGC_L001_R1.unassigned.randomer.fastq.gz, 311… SRA
SRX1686562 SRP072994 OTHER PAIRED
GSM2111508: ENCLB909IOJ; Homo sapiens; OTHER
Sample: SRS1381542
BioProject: PRJNA317675
BioSample: SAMN04623057
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: DGCR8
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346262 7669946 759324654 275.28 383_CLIP_TCCGGAGA-TAATCTTA_L006_R1.A04_383_01_DGCR8.randomer.fastq.gz… SRA
SRR3346263 7951254 787174146 285.8 383_CLIP_TCCGGAGA-TAATCTTA_L006_R1.F05_383_01_DGCR8.randomer.fastq.gz… SRA
SRX1686563 SRP072994 OTHER PAIRED
GSM2111509: ENCLB026DPK; Homo sapiens; OTHER
Sample: SRS1381540
BioProject: PRJNA317675
BioSample: SAMN04623058
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: DGCR8
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346264 8177898 809611902 299.97 383_CLIP_TCCGGAGA-TAATCTTA_L006_R1.A03_383_02_DGCR8.randomer.fastq.gz… SRA
SRR3346265 3879373 384057927 141.12 383_CLIP_TCCGGAGA-TAATCTTA_L006_R1.G07_383_02_DGCR8.randomer.fastq.gz… SRA
SRX1686564 SRP072994 OTHER PAIRED
GSM2111510: ENCSR298SAD; Homo sapiens; OTHER
Sample: SRS1381539
BioProject: PRJNA317675
BioSample: SAMN04623059
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346266 12555369 1381090590 529.51 383_INPUT_TCCGGAGA-AGGCGAAG_L006_R1.unassigned.randomer.fastq.gz, 383… SRA
SRX1686565 SRP072994 OTHER PAIRED
GSM2111511: ENCLB155HIP; Homo sapiens; OTHER
Sample: SRS1381538
BioProject: PRJNA317675
BioSample: SAMN04623060
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: TNRC6A
antibody manufacturer: MBL International
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346267 10227709 1012543191 378.92 415_CLIP_GAATTCGT-ATAGAGGC_L006_R1.A03_415_01_TNRC6A.randomer.fastq.g… SRA
SRR3346268 2836822 280845378 102.72 415_CLIP_GAATTCGT-ATAGAGGC_L006_R1.G07_415_01_TNRC6A.randomer.fastq.g… SRA
SRX1686566 SRP072994 OTHER PAIRED
GSM2111512: ENCLB676CIS; Homo sapiens; OTHER
Sample: SRS1381537
BioProject: PRJNA317675
BioSample: SAMN04623061
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: TNRC6A
antibody manufacturer: MBL International
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346269 5343835 529039665 192.16 415_CLIP_GAATTCGT-ATAGAGGC_L006_R1.A04_415_02_TNRC6A.randomer.fastq.g… SRA
SRR3346270 4546563 450109737 166.47 415_CLIP_GAATTCGT-ATAGAGGC_L006_R1.F05_415_02_TNRC6A.randomer.fastq.g… SRA
SRX1686567 SRP072994 OTHER PAIRED
GSM2111513: ENCSR188OHK; Homo sapiens; OTHER
Sample: SRS1381536
BioProject: PRJNA317675
BioSample: SAMN04623062
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346271 17696656 1946632160 733.3 415_INPUT_ATTCAGAA-ATAGAGGC_L006_R1.unassigned.randomer.fastq.gz, 415… SRA
SRX1686568 SRP072994 OTHER PAIRED
GSM2111514: ENCLB156RWL; Homo sapiens; OTHER
Sample: SRS1381535
BioProject: PRJNA317675
BioSample: SAMN04623063
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: POLR2G
antibody manufacturer: Genetex
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346272 12917798 1459711174 471.86 417_CLIP_S55_L006_R1_001.A01_417_01_POLR2G.randomer.fastq.gz, 417_CLI… SRA
SRR3346273 12496419 1412095347 456.35 417_CLIP_S55_L006_R1_001.B06_417_01_POLR2G.randomer.fastq.gz, 417_CLI… SRA
SRX1686569 SRP072994 OTHER PAIRED
GSM2111515: ENCLB080PWY; Homo sapiens; OTHER
Sample: SRS1381534
BioProject: PRJNA317675
BioSample: SAMN04623064
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: POLR2G
antibody manufacturer: Genetex
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346274 15369573 1736761749 558.52 417_CLIP_S55_L006_R1_001.C01_417_02_POLR2G.randomer.fastq.gz, 417_CLI… SRA
SRR3346275 13685777 1546492801 496.36 417_CLIP_S55_L006_R1_001.D08fixed_417_02_POLR2G.randomer.fastq.gz, 41… SRA
SRX1686570 SRP072994 OTHER PAIRED
GSM2111516: ENCSR585TQT; Homo sapiens; OTHER
Sample: SRS1381533
BioProject: PRJNA317675
BioSample: SAMN04623065
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346276 27292799 3275135880 1112.78 417_INPUT_S56_L006_R1_001.unassigned.randomer.fastq.gz, 417_INPUT_S56… SRA
SRX1686571 SRP072994 OTHER PAIRED
GSM2111517: ENCLB689GWR; Homo sapiens; OTHER
Sample: SRS1381532
BioProject: PRJNA317675
BioSample: SAMN04623066
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: EWSR1
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346277 3087946 348937898 117.45 440_CLIP_TCCGGAGA-AGGCGAAG_L003_R1.A01_440_01_EWSR1.randomer.fastq.gz… SRA
SRR3346278 3125668 353200484 118.48 440_CLIP_TCCGGAGA-AGGCGAAG_L003_R1.B06_440_01_EWSR1.randomer.fastq.gz… SRA
SRX1686572 SRP072994 OTHER PAIRED
GSM2111518: ENCLB959KMS; Homo sapiens; OTHER
Sample: SRS1381531
BioProject: PRJNA317675
BioSample: SAMN04623067
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: EWSR1
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346279 2922150 330202950 110.44 440_CLIP_TCCGGAGA-AGGCGAAG_L003_R1.C01_440_02_EWSR1.randomer.fastq.gz… SRA
SRR3346280 2374600 268329800 90.53 440_CLIP_TCCGGAGA-AGGCGAAG_L003_R1.D08fixed_440_02_EWSR1.randomer.fas… SRA
SRX1686573 SRP072994 OTHER PAIRED
GSM2111519: ENCSR067UKU; Homo sapiens; OTHER
Sample: SRS1381530
BioProject: PRJNA317675
BioSample: SAMN04623068
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346281 16729002 2007480240 714.6 440_INPUT_ATTACTCG-TAATCTTA_L005_R1.unassigned.randomer.fastq.gz, 440… SRA
SRX1686574 SRP072994 OTHER PAIRED
GSM2111520: ENCLB175BHT; Homo sapiens; OTHER
Sample: SRS1381529
BioProject: PRJNA317675
BioSample: SAMN04623069
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: PUM2
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346282 9813335 1069653515 375.25 441_CLIP_CGCTCATT-TATAGCCT_L007_R1.A03_441_01_PUM2.randomer.fastq.gz,… SRA
SRR3346283 3791448 413267832 146.88 441_CLIP_CGCTCATT-TATAGCCT_L007_R1.G07_441_01_PUM2.randomer.fastq.gz,… SRA
SRX1686575 SRP072994 OTHER PAIRED
GSM2111521: ENCLB650JTP; Homo sapiens; OTHER
Sample: SRS1381528
BioProject: PRJNA317675
BioSample: SAMN04623070
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: PUM2
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346284 7107338 774699842 271.26 441_CLIP_CGCTCATT-TATAGCCT_L007_R1.A04_441_02_PUM2.randomer.fastq.gz,… SRA
SRR3346285 7936019 865026071 302.48 441_CLIP_CGCTCATT-TATAGCCT_L007_R1.F05_441_02_PUM2.randomer.fastq.gz,… SRA
SRX1686576 SRP072994 OTHER PAIRED
GSM2111522: ENCSR439GXW; Homo sapiens; OTHER
Sample: SRS1381526
BioProject: PRJNA317675
BioSample: SAMN04623071
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346286 30380213 3645625560 1289.45 441_INPUT_GAGATTCC-ATAGAGGC_L007_R1.unassigned.randomer.fastq.gz, 441… SRA
SRX1686577 SRP072994 OTHER PAIRED
GSM2111523: ENCLB850EER; Homo sapiens; OTHER
Sample: SRS1381527
BioProject: PRJNA317675
BioSample: SAMN04623072
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: GPKOW
antibody manufacturer: Genetex
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346287 9645128 1089899464 405.73 450_CLIP_GAGATTCC-ATAGAGGC_L004_R1.A01_450_01_GPKOW.randomer.fastq.gz… SRA
SRR3346288 8552279 966407527 360.31 450_CLIP_GAGATTCC-ATAGAGGC_L004_R1.B06_450_01_GPKOW.randomer.fastq.gz… SRA
SRX1686578 SRP072994 OTHER PAIRED
GSM2111524: ENCLB288CKF; Homo sapiens; OTHER
Sample: SRS1381525
BioProject: PRJNA317675
BioSample: SAMN04623073
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: GPKOW
antibody manufacturer: Genetex
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346289 10636953 1201975689 447.92 450_CLIP_GAGATTCC-ATAGAGGC_L004_R1.C01_450_02_GPKOW.randomer.fastq.gz… SRA
SRR3346290 7477955 845008915 312.76 450_CLIP_GAGATTCC-ATAGAGGC_L004_R1.D08fixed_450_02_GPKOW.randomer.fas… SRA
SRX1686579 SRP072994 OTHER PAIRED
GSM2111525: ENCSR393STP; Homo sapiens; OTHER
Sample: SRS1381524
BioProject: PRJNA317675
BioSample: SAMN04623074
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346291 26763515 3211621800 1219.9 450_INPUT_CGCTCATT-TATAGCCT_L004_R1.unassigned.randomer.fastq.gz, 450… SRA
SRX1686580 SRP072994 OTHER PAIRED
GSM2111526: ENCLB263TUG; Homo sapiens; OTHER
Sample: SRS1381523
BioProject: PRJNA317675
BioSample: SAMN04623075
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: NSUN2
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346292 9424392 1064956296 372.18 452_CLIP_GAGATTCC-GGCTCTGA_L005_R1.A01_452_01_NSUN2.randomer.fastq.gz… SRA
SRR3346293 9084273 1026522849 373.25 452_CLIP_GAGATTCC-GGCTCTGA_L005_R1.B06_452_01_NSUN2.randomer.fastq.gz… SRA
SRX1686581 SRP072994 OTHER PAIRED
GSM2111527: ENCLB541BNB; Homo sapiens; OTHER
Sample: SRS1381521
BioProject: PRJNA317675
BioSample: SAMN04623076
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: NSUN2
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346294 5587813 631422869 217.97 452_CLIP_GAGATTCC-GGCTCTGA_L005_R1.C01_452_02_NSUN2.randomer.fastq.gz… SRA
SRR3346295 7644494 863827822 310.99 452_CLIP_GAGATTCC-GGCTCTGA_L005_R1.D08fixed_452_02_NSUN2.randomer.fas… SRA
SRX1686582 SRP072994 OTHER PAIRED
GSM2111528: ENCSR595PFU; Homo sapiens; OTHER
Sample: SRS1381522
BioProject: PRJNA317675
BioSample: SAMN04623077
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346296 19730833 2367699960 864.27 452_INPUT_CGCTCATT-CCTATCCT_L005_R1.unassigned.randomer.fastq.gz, 452… SRA
SRX1686583 SRP072994 OTHER PAIRED
GSM2111529: ENCLB550OFF; Homo sapiens; OTHER
Sample: SRS1381520
BioProject: PRJNA317675
BioSample: SAMN04623080
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: FTO
antibody manufacturer: MBL International
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346297 9956949 1125135237 375.72 464_CLIP_GAGATTCC-TAATCTTA_L002_R1.C01_464_01_FTO.randomer.fastq.gz, … SRA
SRR3346298 9053838 1023083694 352.03 464_CLIP_GAGATTCC-TAATCTTA_L002_R1.D08fixed_464_01_FTO.randomer.fastq… SRA
SRX1686584 SRP072994 OTHER PAIRED
GSM2111530: ENCLB152QMP; Homo sapiens; OTHER
Sample: SRS1381518
BioProject: PRJNA317675
BioSample: SAMN04623081
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: FTO
antibody manufacturer: MBL International
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346299 7648487 864279031 288.8 464_CLIP_GAGATTCC-TAATCTTA_L002_R1.A01_464_02_FTO.randomer.fastq.gz, … SRA
SRR3346300 8395733 948717829 326.15 464_CLIP_GAGATTCC-TAATCTTA_L002_R1.B06_464_02_FTO.randomer.fastq.gz, … SRA
SRX1686585 SRP072994 OTHER PAIRED
GSM2111531: ENCSR575DKE; Homo sapiens; OTHER
Sample: SRS1381519
BioProject: PRJNA317675
BioSample: SAMN04623082
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346301 23650202 2838024240 1011.57 464_INPUT_CGCTCATT-AGGCGAAG_L002_R1.unassigned.randomer.fastq.gz, 464… SRA
SRX1686586 SRP072994 OTHER PAIRED
GSM2111532: ENCLB235NQC; Homo sapiens; OTHER
Sample: SRS1381517
BioProject: PRJNA317675
BioSample: SAMN04623083
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: UPF1
antibody manufacturer: MBL International
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346302 8623079 939915611 296.65 465_CLIP_CGCTCATT-TAATCTTA_L001_R1.A03_465_01_UPF1.randomer.fastq.gz,… SRA
SRR3346303 3656544 398563296 126.61 465_CLIP_CGCTCATT-TAATCTTA_L001_R1.G07_465_01_UPF1.randomer.fastq.gz,… SRA
SRX1686587 SRP072994 OTHER PAIRED
GSM2111533: ENCLB022FVI; Homo sapiens; OTHER
Sample: SRS1381516
BioProject: PRJNA317675
BioSample: SAMN04623084
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: UPF1
antibody manufacturer: MBL International
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346304 6730588 733634092 230.08 465_CLIP_CGCTCATT-TAATCTTA_L001_R1.A04_465_02_UPF1.randomer.fastq.gz,… SRA
SRR3346305 5822777 634682693 199.31 465_CLIP_CGCTCATT-TAATCTTA_L001_R1.F05_465_02_UPF1.randomer.fastq.gz,… SRA
SRX1686588 SRP072994 OTHER PAIRED
GSM2111534: ENCSR461LGW; Homo sapiens; OTHER
Sample: SRS1381514
BioProject: PRJNA317675
BioSample: SAMN04623085
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346306 14444795 1733375400 574.75 465_INPUT_GAGATTCC-AGGCGAAG_L001_R1.unassigned.randomer.fastq.gz, 465… SRA
SRX1686589 SRP072994 OTHER PAIRED
GSM2111535: ENCLB423YJJ; Homo sapiens; OTHER
Sample: SRS1381512
BioProject: PRJNA317675
BioSample: SAMN04623078
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: QKI
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346307 23496255 2655076815 873.58 466_CLIP_S25_L003_R1_001.A01_466_01_QKI.randomer.fastq.gz, 466_CLIP_S… SRA
SRR3346308 16218607 1832702591 602.97 466_CLIP_S25_L003_R1_001.B06_466_01_QKI.randomer.fastq.gz, 466_CLIP_S… SRA
SRX1686590 SRP072994 OTHER PAIRED
GSM2111536: ENCLB419TPX; Homo sapiens; OTHER
Sample: SRS1381513
BioProject: PRJNA317675
BioSample: SAMN04623079
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: QKI
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346309 13961019 1577595147 521.45 466_CLIP_S25_L003_R1_001.C01_466_02_QKI.randomer.fastq.gz, 466_CLIP_S… SRA
SRR3346310 10099069 1141194797 376.61 466_CLIP_S25_L003_R1_001.D08fixed_466_02_QKI.randomer.fastq.gz, 466_C… SRA
SRX1686591 SRP072994 OTHER PAIRED
GSM2111537: ENCSR615AAW; Homo sapiens; OTHER
Sample: SRS1381515
BioProject: PRJNA317675
BioSample: SAMN04623086
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346311 25595931 3071511720 1047.14 466_INPUT_S26_L003_R1_001.unassigned.randomer.fastq.gz, 466_INPUT_S26… SRA
SRX1686592 SRP072994 OTHER PAIRED
GSM2111538: ENCLB004PMM; Homo sapiens; OTHER
Sample: SRS1381511
BioProject: PRJNA317675
BioSample: SAMN04623087
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: NCBP2
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346312 15866519 1729450571 582.83 477_CLIP_S49_L006_R1_001.A03_477_01_NCBP2.randomer.fastq.gz, 477_CLIP… SRA
SRR3346313 5458346 594959714 199.99 477_CLIP_S49_L006_R1_001.G07_477_01_NCBP2.randomer.fastq.gz, 477_CLIP… SRA
SRX1686593 SRP072994 OTHER PAIRED
GSM2111539: ENCLB278TOU; Homo sapiens; OTHER
Sample: SRS1381573
BioProject: PRJNA317675
BioSample: SAMN04623088
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: NCBP2
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346314 15935683 1736989447 580.88 477_CLIP_S49_L006_R1_001.A04_477_02_NCBP2.randomer.fastq.gz, 477_CLIP… SRA
SRR3346315 14399525 1569548225 525.04 477_CLIP_S49_L006_R1_001.F05_477_02_NCBP2.randomer.fastq.gz, 477_CLIP… SRA
SRX1686594 SRP072994 OTHER PAIRED
GSM2111540: ENCSR257OYO; Homo sapiens; OTHER
Sample: SRS1381572
BioProject: PRJNA317675
BioSample: SAMN04623089
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346316 24094030 2891283600 1002.92 477_INPUT_S50_L006_R1_001.unassigned.randomer.fastq.gz, 477_INPUT_S50… SRA
SRX1686595 SRP072994 OTHER PAIRED
GSM2111541: ENCLB238JYQ; Homo sapiens; OTHER
Sample: SRS1381571
BioProject: PRJNA317675
BioSample: SAMN04623090
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: QKI
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346317 18198421 1983627889 661.66 478_CLIP_S51_L006_R1_001.A04_478_01_QKI.randomer.fastq.gz, 478_CLIP_S… SRA
SRR3346318 19247293 2097954937 699.37 478_CLIP_S51_L006_R1_001.F05_478_01_QKI.randomer.fastq.gz, 478_CLIP_S… SRA
SRX1686596 SRP072994 OTHER PAIRED
GSM2111542: ENCLB436FYS; Homo sapiens; OTHER
Sample: SRS1381570
BioProject: PRJNA317675
BioSample: SAMN04623091
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: QKI
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346319 30314184 3304246056 1101.31 478_CLIP_S51_L006_R1_001.A03_478_02_QKI.randomer.fastq.gz, 478_CLIP_S… SRA
SRR3346320 9230871 1006164939 333.27 478_CLIP_S51_L006_R1_001.G07_478_02_QKI.randomer.fastq.gz, 478_CLIP_S… SRA
SRX1686597 SRP072994 OTHER PAIRED
GSM2111543: ENCSR130TOJ; Homo sapiens; OTHER
Sample: SRS1381569
BioProject: PRJNA317675
BioSample: SAMN04623092
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346321 22948658 2753838960 945.48 478_INPUT_S52_L006_R1_001.unassigned.randomer.fastq.gz, 478_INPUT_S52… SRA
SRX1686598 SRP072994 OTHER PAIRED
GSM2111544: ENCLB472AWB; Homo sapiens; OTHER
Sample: SRS1381568
BioProject: PRJNA317675
BioSample: SAMN04623093
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: XRCC6
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346322 17255452 1949866076 664.84 480_CLIP_S60_L007_R1_001.A01_480_01_XRCC6.randomer.fastq.gz, 480_CLIP… SRA
SRR3346323 18095226 2044760538 694.4 480_CLIP_S60_L007_R1_001.B06_480_01_XRCC6.randomer.fastq.gz, 480_CLIP… SRA
SRX1686599 SRP072994 OTHER PAIRED
GSM2111545: ENCLB874IKE; Homo sapiens; OTHER
Sample: SRS1381567
BioProject: PRJNA317675
BioSample: SAMN04623094
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: XRCC6
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346324 18244819 2061664547 700.19 480_CLIP_S60_L007_R1_001.C01_480_02_XRCC6.randomer.fastq.gz, 480_CLIP… SRA
SRR3346325 13282345 1500904985 507.37 480_CLIP_S60_L007_R1_001.D08fixed_480_02_XRCC6.randomer.fastq.gz, 480… SRA
SRX1686600 SRP072994 OTHER PAIRED
GSM2111546: ENCSR687HHB; Homo sapiens; OTHER
Sample: SRS1381566
BioProject: PRJNA317675
BioSample: SAMN04623095
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346326 31634980 3796197600 1333.18 480_INPUT_S61_L007_R1_001.unassigned.randomer.fastq.gz, 480_INPUT_S61… SRA
SRX1686601 SRP072994 OTHER PAIRED
GSM2111547: ENCLB778RFV; Homo sapiens; OTHER
Sample: SRS1381565
BioProject: PRJNA317675
BioSample: SAMN04623096
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: DROSHA
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346327 14296346 1615487098 556.24 481_CLIP_S62_L007_R1_001.A01_481_01_DROSHA.randomer.fastq.gz, 481_CLI… SRA
SRR3346328 13900658 1570774354 539.83 481_CLIP_S62_L007_R1_001.B06_481_01_DROSHA.randomer.fastq.gz, 481_CLI… SRA
SRX1686602 SRP072994 OTHER PAIRED
GSM2111548: ENCLB893EAL; Homo sapiens; OTHER
Sample: SRS1381564
BioProject: PRJNA317675
BioSample: SAMN04623097
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: DROSHA
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346329 17410746 1967414298 677.17 481_CLIP_S62_L007_R1_001.C01_481_02_DROSHA.randomer.fastq.gz, 481_CLI… SRA
SRR3346330 12702966 1435435158 492.28 481_CLIP_S62_L007_R1_001.D08fixed_481_02_DROSHA.randomer.fastq.gz, 48… SRA
SRX1686603 SRP072994 OTHER PAIRED
GSM2111549: ENCSR828NSY; Homo sapiens; OTHER
Sample: SRS1381563
BioProject: PRJNA317675
BioSample: SAMN04623098
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346331 35213691 4225642920 1457.49 481_INPUT_S63_L007_R1_001.unassigned.randomer.fastq.gz, 481_INPUT_S63… SRA
SRX1686604 SRP072994 OTHER PAIRED
GSM2111550: ENCLB123NMA; Homo sapiens; OTHER
Sample: SRS1381562
BioProject: PRJNA317675
BioSample: SAMN04623099
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: POLR2G
antibody manufacturer: Genetex
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346332 8500371 960541923 313.19 484_CLIP_S6_L001_R1_001.A01_484_01_POLR2G.randomer.fastq.gz, 484_CLIP… SRA
SRR3346333 10872983 1228647079 399.66 484_CLIP_S6_L001_R1_001.B06_484_01_POLR2G.randomer.fastq.gz, 484_CLIP… SRA
SRX1686605 SRP072994 OTHER PAIRED
GSM2111551: ENCLB195YGJ; Homo sapiens; OTHER
Sample: SRS1381561
BioProject: PRJNA317675
BioSample: SAMN04623100
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: POLR2G
antibody manufacturer: Genetex
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346334 10312213 1165280069 380.43 484_CLIP_S6_L001_R1_001.C01_484_02_POLR2G.randomer.fastq.gz, 484_CLIP… SRA
SRR3346335 9118376 1030376488 335.26 484_CLIP_S6_L001_R1_001.D08fixed_484_02_POLR2G.randomer.fastq.gz, 484… SRA
SRX1686606 SRP072994 OTHER PAIRED
GSM2111552: ENCSR129SCO; Homo sapiens; OTHER
Sample: SRS1381560
BioProject: PRJNA317675
BioSample: SAMN04623101
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346336 20257094 2430851280 816.87 484_INPUT_S7_L001_R1_001.unassigned.randomer.fastq.gz, 484_INPUT_S7_L… SRA
SRX1686607 SRP072994 OTHER PAIRED
GSM2111553: ENCLB933GRD; Homo sapiens; OTHER
Sample: SRS1381559
BioProject: PRJNA317675
BioSample: SAMN04623102
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: DDX3X
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346337 13668460 1489862140 484.06 492_CLIP_S11_L002_R1_001.A04_492_01_DDX3X.randomer.fastq.gz, 492_CLIP… SRA
SRR3346338 13670626 1490098234 483.37 492_CLIP_S11_L002_R1_001.F05_492_01_DDX3X.randomer.fastq.gz, 492_CLIP… SRA
SRX1686608 SRP072994 OTHER PAIRED
GSM2111554: ENCLB436IZW; Homo sapiens; OTHER
Sample: SRS1381558
BioProject: PRJNA317675
BioSample: SAMN04623103
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: DDX3X
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346339 18510931 2017691479 653.56 492_CLIP_S11_L002_R1_001.A03_492_02_DDX3X.randomer.fastq.gz, 492_CLIP… SRA
SRR3346340 7182297 782870373 253.34 492_CLIP_S11_L002_R1_001.G07_492_02_DDX3X.randomer.fastq.gz, 492_CLIP… SRA
SRX1686609 SRP072994 OTHER PAIRED
GSM2111555: ENCSR090VXV; Homo sapiens; OTHER
Sample: SRS1381557
BioProject: PRJNA317675
BioSample: SAMN04623104
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346341 29456187 3534742440 1187.85 492_INPUT_S12_L002_R1_001.unassigned.randomer.fastq.gz, 492_INPUT_S12… SRA
SRX1686610 SRP072994 OTHER PAIRED
GSM2111556: ENCLB371PGL; Homo sapiens; OTHER
Sample: SRS1381556
BioProject: PRJNA317675
BioSample: SAMN04623105
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: RBM22
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346342 16211024 1767001616 576.44 494_CLIP_S19_L003_R1_001.A03_494_01_RBM22.randomer.fastq.gz, 494_CLIP… SRA
SRR3346343 7594173 827764857 269.43 494_CLIP_S19_L003_R1_001.G07_494_01_RBM22.randomer.fastq.gz, 494_CLIP… SRA
SRX1686611 SRP072994 OTHER PAIRED
GSM2111557: ENCLB019FNY; Homo sapiens; OTHER
Sample: SRS1381555
BioProject: PRJNA317675
BioSample: SAMN04623106
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: RBM22
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346344 16021083 1746298047 566.06 494_CLIP_S19_L003_R1_001.A04_494_02_RBM22.randomer.fastq.gz, 494_CLIP… SRA
SRR3346345 18355660 2000766940 649.07 494_CLIP_S19_L003_R1_001.F05_494_02_RBM22.randomer.fastq.gz, 494_CLIP… SRA
SRX1686612 SRP072994 OTHER PAIRED
GSM2111558: ENCSR775UPS; Homo sapiens; OTHER
Sample: SRS1381554
BioProject: PRJNA317675
BioSample: SAMN04623107
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346346 36262724 4351526880 1450.13 494_INPUT_S20_L003_R1_001.unassigned.randomer.fastq.gz, 494_INPUT_S20… SRA
SRX1686613 SRP072994 OTHER PAIRED
GSM2111559: ENCLB238HOU; Homo sapiens; OTHER
Sample: SRS1381553
BioProject: PRJNA317675
BioSample: SAMN04623108
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: PPIG
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346347 15030233 1638295397 529.83 495_CLIP_S21_L003_R1_001.A04_495_01_PPIG.randomer.fastq.gz, 495_CLIP_… SRA
SRR3346348 13838651 1508412959 488.04 495_CLIP_S21_L003_R1_001.F05_495_01_PPIG.randomer.fastq.gz, 495_CLIP_… SRA
SRX1686614 SRP072994 OTHER PAIRED
GSM2111560: ENCLB483UDN; Homo sapiens; OTHER
Sample: SRS1381552
BioProject: PRJNA317675
BioSample: SAMN04623109
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: PPIG
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346349 15031781 1638464129 528.33 495_CLIP_S21_L003_R1_001.A03_495_02_PPIG.randomer.fastq.gz, 495_CLIP_… SRA
SRR3346350 11230284 1224100956 393.93 495_CLIP_S21_L003_R1_001.G07_495_02_PPIG.randomer.fastq.gz, 495_CLIP_… SRA
SRX1686615 SRP072994 OTHER PAIRED
GSM2111561: ENCSR445LJH; Homo sapiens; OTHER
Sample: SRS1381551
BioProject: PRJNA317675
BioSample: SAMN04623110
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
cell line: HepG2
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346351 26646719 3197606280 1064.2 495_INPUT_S22_L003_R1_001.unassigned.randomer.fastq.gz, 495_INPUT_S22… SRA
SRX1686616 SRP072994 OTHER PAIRED
GSM2111562: ENCLB203AIU; Homo sapiens; OTHER
Sample: SRS1381548
BioProject: PRJNA317675
BioSample: SAMN04623111
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: SF3B1
antibody manufacturer: Abcam
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346352 19335476 2107566884 709.56 506_CLIP_S64_L007_R1_001.A03_506_01_SF3B1.randomer.fastq.gz, 506_CLIP… SRA
SRR3346353 6565074 715593066 240.67 506_CLIP_S64_L007_R1_001.G07_506_01_SF3B1.randomer.fastq.gz, 506_CLIP… SRA
SRX1686617 SRP072994 OTHER PAIRED
GSM2111563: ENCLB354LPS; Homo sapiens; OTHER
Sample: SRS1381550
BioProject: PRJNA317675
BioSample: SAMN04623112
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: SF3B1
antibody manufacturer: Abcam
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346354 12098257 1318710013 441.93 506_CLIP_S64_L007_R1_001.A04_506_02_SF3B1.randomer.fastq.gz, 506_CLIP… SRA
SRR3346355 13058746 1423403314 476.34 506_CLIP_S64_L007_R1_001.F05_506_02_SF3B1.randomer.fastq.gz, 506_CLIP… SRA
SRX1686618 SRP072994 OTHER PAIRED
GSM2111564: ENCSR496UBM; Homo sapiens; OTHER
Sample: SRS1381549
BioProject: PRJNA317675
BioSample: SAMN04623113
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346356 32774233 3932907960 1375.92 506_INPUT_S65_L007_R1_001.unassigned.randomer.fastq.gz, 506_INPUT_S65… SRA
SRX1686619 SRP072994 OTHER PAIRED
GSM2111565: ENCLB679DRC; Homo sapiens; OTHER
Sample: SRS1381546
BioProject: PRJNA317675
BioSample: SAMN04623114
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: BUD13
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346357 15602081 1763035153 579.66 508_CLIP_S31_L004_R1_001.A01_508_01_BUD13.randomer.fastq.gz, 508_CLIP… SRA
SRR3346358 12765249 1442473137 472.7 508_CLIP_S31_L004_R1_001.B06_508_01_BUD13.randomer.fastq.gz, 508_CLIP… SRA
SRX1686620 SRP072994 OTHER PAIRED
GSM2111566: ENCLB612WYL; Homo sapiens; OTHER
Sample: SRS1381547
BioProject: PRJNA317675
BioSample: SAMN04623115
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: BUD13
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3346359 17048512 1926481856 632.73 508_CLIP_S31_L004_R1_001.C01_508_02_BUD13.randomer.fastq.gz, 508_CLIP… SRA
SRR3346360 11454154 1294319402 423.73 508_CLIP_S31_L004_R1_001.D08fixed_508_02_BUD13.randomer.fastq.gz, 508… SRA
SRX1686621 SRP072994 OTHER PAIRED
GSM2111567: ENCSR736LKF; Homo sapiens; OTHER
Sample: SRS1381545
BioProject: PRJNA317675
BioSample: SAMN04623116
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
cell line: K562
antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
K562
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3346361 30811149 3697337880 1256.03 508_INPUT_S32_L004_R1_001.unassigned.randomer.fastq.gz, 508_INPUT_S32… SRA

Linked Publications (1)

Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP).
Nature methods · 2016

Data Files (212)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— 311_CLIP_ATTCAGAA-ATAGAGGC_L001_R1.A01_311_01_XRCC6.ra… OTHER 348.9 MB link
— 311_CLIP_ATTCAGAA-ATAGAGGC_L001_R1.B06_311_01_XRCC6.ra… OTHER 134.7 MB link
— 311_CLIP_ATTCAGAA-ATAGAGGC_L001_R1.C01_311_02_XRCC6.ra… OTHER 270.6 MB link
— 311_CLIP_ATTCAGAA-ATAGAGGC_L001_R1.D08fixed_311_02_XRC… OTHER 81.0 MB link
— 311_INPUT_GAATTCGT-ATAGAGGC_L001_R1.unassigned.randome… OTHER 760.6 MB link
— 383_CLIP_TCCGGAGA-TAATCTTA_L006_R1.A03_383_02_DGCR8.ra… OTHER 300.0 MB link
— 383_CLIP_TCCGGAGA-TAATCTTA_L006_R1.A04_383_01_DGCR8.ra… OTHER 275.3 MB link
— 383_CLIP_TCCGGAGA-TAATCTTA_L006_R1.F05_383_01_DGCR8.ra… OTHER 285.8 MB link
— 383_CLIP_TCCGGAGA-TAATCTTA_L006_R1.G07_383_02_DGCR8.ra… OTHER 141.1 MB link
— 383_INPUT_TCCGGAGA-AGGCGAAG_L006_R1.unassigned.randome… OTHER 529.5 MB link
— 415_CLIP_GAATTCGT-ATAGAGGC_L006_R1.A03_415_01_TNRC6A.r… OTHER 378.9 MB link
— 415_CLIP_GAATTCGT-ATAGAGGC_L006_R1.A04_415_02_TNRC6A.r… OTHER 192.2 MB link
— 415_CLIP_GAATTCGT-ATAGAGGC_L006_R1.F05_415_02_TNRC6A.r… OTHER 166.5 MB link
— 415_CLIP_GAATTCGT-ATAGAGGC_L006_R1.G07_415_01_TNRC6A.r… OTHER 102.7 MB link
— 415_INPUT_ATTCAGAA-ATAGAGGC_L006_R1.unassigned.randome… OTHER 733.3 MB link
— 417_CLIP_S55_L006_R1_001.A01_417_01_POLR2G.randomer.fa… OTHER 471.9 MB link
— 417_CLIP_S55_L006_R1_001.B06_417_01_POLR2G.randomer.fa… OTHER 456.3 MB link
— 417_CLIP_S55_L006_R1_001.C01_417_02_POLR2G.randomer.fa… OTHER 558.5 MB link
— 417_CLIP_S55_L006_R1_001.D08fixed_417_02_POLR2G.random… OTHER 496.4 MB link
— 417_INPUT_S56_L006_R1_001.unassigned.randomer.fastq.gz OTHER 1.1 GB link
— 440_CLIP_TCCGGAGA-AGGCGAAG_L003_R1.A01_440_01_EWSR1.ra… OTHER 117.4 MB link
— 440_CLIP_TCCGGAGA-AGGCGAAG_L003_R1.B06_440_01_EWSR1.ra… OTHER 118.5 MB link
— 440_CLIP_TCCGGAGA-AGGCGAAG_L003_R1.C01_440_02_EWSR1.ra… OTHER 110.4 MB link
— 440_CLIP_TCCGGAGA-AGGCGAAG_L003_R1.D08fixed_440_02_EWS… OTHER 90.5 MB link
— 440_INPUT_ATTACTCG-TAATCTTA_L005_R1.unassigned.randome… OTHER 714.6 MB link
— 441_CLIP_CGCTCATT-TATAGCCT_L007_R1.A03_441_01_PUM2.ran… OTHER 375.2 MB link
— 441_CLIP_CGCTCATT-TATAGCCT_L007_R1.A04_441_02_PUM2.ran… OTHER 271.3 MB link
— 441_CLIP_CGCTCATT-TATAGCCT_L007_R1.F05_441_02_PUM2.ran… OTHER 302.5 MB link
— 441_CLIP_CGCTCATT-TATAGCCT_L007_R1.G07_441_01_PUM2.ran… OTHER 146.9 MB link
— 441_INPUT_GAGATTCC-ATAGAGGC_L007_R1.unassigned.randome… OTHER 1.3 GB link
— 450_CLIP_GAGATTCC-ATAGAGGC_L004_R1.A01_450_01_GPKOW.ra… OTHER 405.7 MB link
— 450_CLIP_GAGATTCC-ATAGAGGC_L004_R1.B06_450_01_GPKOW.ra… OTHER 360.3 MB link
— 450_CLIP_GAGATTCC-ATAGAGGC_L004_R1.C01_450_02_GPKOW.ra… OTHER 447.9 MB link
— 450_CLIP_GAGATTCC-ATAGAGGC_L004_R1.D08fixed_450_02_GPK… OTHER 312.8 MB link
— 450_INPUT_CGCTCATT-TATAGCCT_L004_R1.unassigned.randome… OTHER 1.2 GB link
— 452_CLIP_GAGATTCC-GGCTCTGA_L005_R1.A01_452_01_NSUN2.ra… OTHER 372.2 MB link
— 452_CLIP_GAGATTCC-GGCTCTGA_L005_R1.B06_452_01_NSUN2.ra… OTHER 373.2 MB link
— 452_CLIP_GAGATTCC-GGCTCTGA_L005_R1.C01_452_02_NSUN2.ra… OTHER 218.0 MB link
— 452_CLIP_GAGATTCC-GGCTCTGA_L005_R1.D08fixed_452_02_NSU… OTHER 311.0 MB link
— 452_INPUT_CGCTCATT-CCTATCCT_L005_R1.unassigned.randome… OTHER 864.3 MB link
— 464_CLIP_GAGATTCC-TAATCTTA_L002_R1.A01_464_02_FTO.rand… OTHER 288.8 MB link
— 464_CLIP_GAGATTCC-TAATCTTA_L002_R1.B06_464_02_FTO.rand… OTHER 326.1 MB link
— 464_CLIP_GAGATTCC-TAATCTTA_L002_R1.C01_464_01_FTO.rand… OTHER 375.7 MB link
— 464_CLIP_GAGATTCC-TAATCTTA_L002_R1.D08fixed_464_01_FTO… OTHER 352.0 MB link
— 464_INPUT_CGCTCATT-AGGCGAAG_L002_R1.unassigned.randome… OTHER 1011.6 MB link
— 465_CLIP_CGCTCATT-TAATCTTA_L001_R1.A03_465_01_UPF1.ran… OTHER 296.6 MB link
— 465_CLIP_CGCTCATT-TAATCTTA_L001_R1.A04_465_02_UPF1.ran… OTHER 230.1 MB link
— 465_CLIP_CGCTCATT-TAATCTTA_L001_R1.F05_465_02_UPF1.ran… OTHER 199.3 MB link
— 465_CLIP_CGCTCATT-TAATCTTA_L001_R1.G07_465_01_UPF1.ran… OTHER 126.6 MB link
— 465_INPUT_GAGATTCC-AGGCGAAG_L001_R1.unassigned.randome… OTHER 574.8 MB link
— 466_CLIP_S25_L003_R1_001.A01_466_01_QKI.randomer.fastq… OTHER 873.6 MB link
— 466_CLIP_S25_L003_R1_001.B06_466_01_QKI.randomer.fastq… OTHER 603.0 MB link
— 466_CLIP_S25_L003_R1_001.C01_466_02_QKI.randomer.fastq… OTHER 521.4 MB link
— 466_CLIP_S25_L003_R1_001.D08fixed_466_02_QKI.randomer.… OTHER 376.6 MB link
— 466_INPUT_S26_L003_R1_001.unassigned.randomer.fastq.gz OTHER 1.0 GB link
— 477_CLIP_S49_L006_R1_001.A03_477_01_NCBP2.randomer.fas… OTHER 582.8 MB link
— 477_CLIP_S49_L006_R1_001.A04_477_02_NCBP2.randomer.fas… OTHER 580.9 MB link
— 477_CLIP_S49_L006_R1_001.F05_477_02_NCBP2.randomer.fas… OTHER 525.0 MB link
— 477_CLIP_S49_L006_R1_001.G07_477_01_NCBP2.randomer.fas… OTHER 200.0 MB link
— 477_INPUT_S50_L006_R1_001.unassigned.randomer.fastq.gz OTHER 1002.9 MB link
— 478_CLIP_S51_L006_R1_001.A03_478_02_QKI.randomer.fastq… OTHER 1.1 GB link
— 478_CLIP_S51_L006_R1_001.A04_478_01_QKI.randomer.fastq… OTHER 661.7 MB link
— 478_CLIP_S51_L006_R1_001.F05_478_01_QKI.randomer.fastq… OTHER 699.4 MB link
— 478_CLIP_S51_L006_R1_001.G07_478_02_QKI.randomer.fastq… OTHER 333.3 MB link
— 478_INPUT_S52_L006_R1_001.unassigned.randomer.fastq.gz OTHER 945.5 MB link
— 480_CLIP_S60_L007_R1_001.A01_480_01_XRCC6.randomer.fas… OTHER 664.8 MB link
— 480_CLIP_S60_L007_R1_001.B06_480_01_XRCC6.randomer.fas… OTHER 694.4 MB link
— 480_CLIP_S60_L007_R1_001.C01_480_02_XRCC6.randomer.fas… OTHER 700.2 MB link
— 480_CLIP_S60_L007_R1_001.D08fixed_480_02_XRCC6.randome… OTHER 507.4 MB link
— 480_INPUT_S61_L007_R1_001.unassigned.randomer.fastq.gz OTHER 1.3 GB link
— 481_CLIP_S62_L007_R1_001.A01_481_01_DROSHA.randomer.fa… OTHER 556.2 MB link
— 481_CLIP_S62_L007_R1_001.B06_481_01_DROSHA.randomer.fa… OTHER 539.8 MB link
— 481_CLIP_S62_L007_R1_001.C01_481_02_DROSHA.randomer.fa… OTHER 677.2 MB link
— 481_CLIP_S62_L007_R1_001.D08fixed_481_02_DROSHA.random… OTHER 492.3 MB link
— 481_INPUT_S63_L007_R1_001.unassigned.randomer.fastq.gz OTHER 1.4 GB link
— 484_CLIP_S6_L001_R1_001.A01_484_01_POLR2G.randomer.fas… OTHER 313.2 MB link
— 484_CLIP_S6_L001_R1_001.B06_484_01_POLR2G.randomer.fas… OTHER 399.7 MB link
— 484_CLIP_S6_L001_R1_001.C01_484_02_POLR2G.randomer.fas… OTHER 380.4 MB link
— 484_CLIP_S6_L001_R1_001.D08fixed_484_02_POLR2G.randome… OTHER 335.3 MB link
— 484_CLIP_S6_L001_R2_001.C01_484_02_POLR2G.randomer.fas… OTHER 380.4 MB link
— 484_INPUT_S7_L001_R1_001.unassigned.randomer.fastq.gz OTHER 816.9 MB link
— 492_CLIP_S11_L002_R1_001.A03_492_02_DDX3X.randomer.fas… OTHER 653.6 MB link
— 492_CLIP_S11_L002_R1_001.A04_492_01_DDX3X.randomer.fas… OTHER 484.1 MB link
— 492_CLIP_S11_L002_R1_001.F05_492_01_DDX3X.randomer.fas… OTHER 483.4 MB link
— 492_CLIP_S11_L002_R1_001.G07_492_02_DDX3X.randomer.fas… OTHER 253.3 MB link
— 492_INPUT_S12_L002_R1_001.unassigned.randomer.fastq.gz OTHER 1.2 GB link
— 494_CLIP_S19_L003_R1_001.A03_494_01_RBM22.randomer.fas… OTHER 576.4 MB link
— 494_CLIP_S19_L003_R1_001.A04_494_02_RBM22.randomer.fas… OTHER 566.1 MB link
— 494_CLIP_S19_L003_R1_001.F05_494_02_RBM22.randomer.fas… OTHER 649.1 MB link
— 494_CLIP_S19_L003_R1_001.G07_494_01_RBM22.randomer.fas… OTHER 269.4 MB link
— 494_INPUT_S20_L003_R1_001.unassigned.randomer.fastq.gz OTHER 1.4 GB link
— 495_CLIP_S21_L003_R1_001.A03_495_02_PPIG.randomer.fast… OTHER 528.3 MB link
— 495_CLIP_S21_L003_R1_001.A04_495_01_PPIG.randomer.fast… OTHER 529.8 MB link
— 495_CLIP_S21_L003_R1_001.F05_495_01_PPIG.randomer.fast… OTHER 488.0 MB link
— 495_CLIP_S21_L003_R1_001.G07_495_02_PPIG.randomer.fast… OTHER 393.9 MB link
— 495_INPUT_S22_L003_R1_001.unassigned.randomer.fastq.gz OTHER 1.0 GB link
— 506_CLIP_S64_L007_R1_001.A03_506_01_SF3B1.randomer.fas… OTHER 709.6 MB link
— 506_CLIP_S64_L007_R1_001.A04_506_02_SF3B1.randomer.fas… OTHER 441.9 MB link
— 506_CLIP_S64_L007_R1_001.F05_506_02_SF3B1.randomer.fas… OTHER 476.3 MB link
— 506_CLIP_S64_L007_R1_001.G07_506_01_SF3B1.randomer.fas… OTHER 240.7 MB link
— 506_CLIP_S64_L007_R2_001.G07_506_01_SF3B1.randomer.fas… OTHER 240.7 MB link
— 506_INPUT_S65_L007_R1_001.unassigned.randomer.fastq.gz OTHER 1.3 GB link
— 508_CLIP_S31_L004_R1_001.A01_508_01_BUD13.randomer.fas… OTHER 579.7 MB link
— 508_CLIP_S31_L004_R1_001.B06_508_01_BUD13.randomer.fas… OTHER 472.7 MB link
— 508_CLIP_S31_L004_R1_001.C01_508_02_BUD13.randomer.fas… OTHER 632.7 MB link
— 508_CLIP_S31_L004_R1_001.D08fixed_508_02_BUD13.randome… OTHER 423.7 MB link
— 508_INPUT_S32_L004_R1_001.unassigned.randomer.fastq.gz OTHER 1.2 GB link
— SRR3346257_GSM2111505 OTHER 348.0 MB link
— SRR3346258_GSM2111505 OTHER 134.0 MB link
— SRR3346259_GSM2111506 OTHER 270.0 MB link
— SRR3346260_GSM2111506 OTHER 80.0 MB link
— SRR3346261_GSM2111507 OTHER 760.0 MB link
— SRR3346262_GSM2111508 OTHER 275.0 MB link
— SRR3346263_GSM2111508 OTHER 285.0 MB link
— SRR3346264_GSM2111509 OTHER 299.0 MB link
— SRR3346265_GSM2111509 OTHER 141.0 MB link
— SRR3346266_GSM2111510 OTHER 529.0 MB link
— SRR3346267_GSM2111511 OTHER 378.0 MB link
— SRR3346268_GSM2111511 OTHER 102.0 MB link
— SRR3346269_GSM2111512 OTHER 192.0 MB link
— SRR3346270_GSM2111512 OTHER 166.0 MB link
— SRR3346271_GSM2111513 OTHER 733.0 MB link
— SRR3346272_GSM2111514 OTHER 471.0 MB link
— SRR3346273_GSM2111514 OTHER 456.0 MB link
— SRR3346274_GSM2111515 OTHER 558.0 MB link
— SRR3346275_GSM2111515 OTHER 496.0 MB link
— SRR3346276_GSM2111516 OTHER 1.1 GB link
— SRR3346277_GSM2111517 OTHER 117.0 MB link
— SRR3346278_GSM2111517 OTHER 118.0 MB link
— SRR3346279_GSM2111518 OTHER 110.0 MB link
— SRR3346280_GSM2111518 OTHER 90.0 MB link
— SRR3346281_GSM2111519 OTHER 714.0 MB link
— SRR3346282_GSM2111520 OTHER 375.0 MB link
— SRR3346283_GSM2111520 OTHER 146.0 MB link
— SRR3346284_GSM2111521 OTHER 271.0 MB link
— SRR3346285_GSM2111521 OTHER 302.0 MB link
— SRR3346286_GSM2111522 OTHER 1.3 GB link
— SRR3346287_GSM2111523 OTHER 405.0 MB link
— SRR3346288_GSM2111523 OTHER 360.0 MB link
— SRR3346289_GSM2111524 OTHER 447.0 MB link
— SRR3346290_GSM2111524 OTHER 312.0 MB link
— SRR3346291_GSM2111525 OTHER 1.2 GB link
— SRR3346292_GSM2111526 OTHER 372.0 MB link
— SRR3346293_GSM2111526 OTHER 373.0 MB link
— SRR3346294_GSM2111527 OTHER 217.0 MB link
— SRR3346295_GSM2111527 OTHER 310.0 MB link
— SRR3346296_GSM2111528 OTHER 864.0 MB link
— SRR3346297_GSM2111529 OTHER 375.0 MB link
— SRR3346298_GSM2111529 OTHER 352.0 MB link
— SRR3346299_GSM2111530 OTHER 288.0 MB link
— SRR3346300_GSM2111530 OTHER 326.0 MB link
— SRR3346301_GSM2111531 OTHER 1011.0 MB link
— SRR3346302_GSM2111532 OTHER 296.0 MB link
— SRR3346303_GSM2111532 OTHER 126.0 MB link
— SRR3346304_GSM2111533 OTHER 230.0 MB link
— SRR3346305_GSM2111533 OTHER 199.0 MB link
— SRR3346306_GSM2111534 OTHER 574.0 MB link
— SRR3346307_GSM2111535 OTHER 873.0 MB link
— SRR3346308_GSM2111535 OTHER 602.0 MB link
— SRR3346309_GSM2111536 OTHER 521.0 MB link
— SRR3346310_GSM2111536 OTHER 376.0 MB link
— SRR3346311_GSM2111537 OTHER 1.0 GB link
— SRR3346312_GSM2111538 OTHER 582.0 MB link
— SRR3346313_GSM2111538 OTHER 199.0 MB link
— SRR3346314_GSM2111539 OTHER 580.0 MB link
— SRR3346315_GSM2111539 OTHER 525.0 MB link
— SRR3346316_GSM2111540 OTHER 1002.0 MB link
— SRR3346317_GSM2111541 OTHER 661.0 MB link
— SRR3346318_GSM2111541 OTHER 699.0 MB link
— SRR3346319_GSM2111542 OTHER 1.1 GB link
— SRR3346320_GSM2111542 OTHER 333.0 MB link
— SRR3346321_GSM2111543 OTHER 945.0 MB link
— SRR3346322_GSM2111544 OTHER 664.0 MB link
— SRR3346323_GSM2111544 OTHER 694.0 MB link
— SRR3346324_GSM2111545 OTHER 700.0 MB link
— SRR3346325_GSM2111545 OTHER 507.0 MB link
— SRR3346326_GSM2111546 OTHER 1.3 GB link
— SRR3346327_GSM2111547 OTHER 556.0 MB link
— SRR3346328_GSM2111547 OTHER 539.0 MB link
— SRR3346329_GSM2111548 OTHER 677.0 MB link
— SRR3346330_GSM2111548 OTHER 492.0 MB link
— SRR3346331_GSM2111549 OTHER 1.4 GB link
— SRR3346332_GSM2111550 OTHER 313.0 MB link
— SRR3346333_GSM2111550 OTHER 399.0 MB link
— SRR3346334_GSM2111551 OTHER 380.0 MB link
— SRR3346335_GSM2111551 OTHER 335.0 MB link
— SRR3346336_GSM2111552 OTHER 816.0 MB link
— SRR3346337_GSM2111553 OTHER 484.0 MB link
— SRR3346338_GSM2111553 OTHER 483.0 MB link
— SRR3346339_GSM2111554 OTHER 653.0 MB link
— SRR3346340_GSM2111554 OTHER 253.0 MB link
— SRR3346341_GSM2111555 OTHER 1.2 GB link
— SRR3346342_GSM2111556 OTHER 576.0 MB link
— SRR3346343_GSM2111556 OTHER 269.0 MB link
— SRR3346344_GSM2111557 OTHER 566.0 MB link
— SRR3346345_GSM2111557 OTHER 649.0 MB link
— SRR3346346_GSM2111558 OTHER 1.4 GB link
— SRR3346347_GSM2111559 OTHER 529.0 MB link
— SRR3346348_GSM2111559 OTHER 488.0 MB link
— SRR3346349_GSM2111560 OTHER 528.0 MB link
— SRR3346350_GSM2111560 OTHER 393.0 MB link
— SRR3346351_GSM2111561 OTHER 1.0 GB link
— SRR3346352_GSM2111562 OTHER 709.0 MB link
— SRR3346353_GSM2111562 OTHER 240.0 MB link
— SRR3346354_GSM2111563 OTHER 441.0 MB link
— SRR3346355_GSM2111563 OTHER 476.0 MB link
— SRR3346356_GSM2111564 OTHER 1.3 GB link
— SRR3346357_GSM2111565 OTHER 579.0 MB link
— SRR3346358_GSM2111565 OTHER 472.0 MB link
— SRR3346359_GSM2111566 OTHER 632.0 MB link
— SRR3346360_GSM2111566 OTHER 423.0 MB link
— SRR3346361_GSM2111567 OTHER 1.2 GB link