#!/usr/bin/env bash
# Bulk download script for GSE221870
# Generated from Yeo Lab Publications Database
# Total files: 153

OUTDIR="GSE221870"
mkdir -p "$OUTDIR"
cd "$OUTDIR"

# --- GEO supplementary files ---
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE221nnn/GSE221870/suppl/GSE221870_RAW.tar" -O "GSE221870_RAW.tar"

# --- SRA run files ---
# Tip: use 'fasterq-dump' from SRA Toolkit for FASTQ conversion
#      with optional renaming to original submitted FASTQ names.
# Set to 1 to rename SRR outputs (e.g. SRR_1.fastq.gz -> sample_R1.fastq.gz)
RENAME_SRA_TO_ORIGINAL=1

_compress_if_exists() {
  local stem="$1"
  if [ -f "${stem}.fastq" ]; then
    gzip -f "${stem}.fastq"
    echo "${stem}.fastq.gz"
    return 0
  fi
  if [ -f "${stem}.fq" ]; then
    gzip -f "${stem}.fq"
    echo "${stem}.fq.gz"
    return 0
  fi
  return 1
}

# Option A: Download via SRA Toolkit (recommended)
fasterq-dump --split-files "SRR22909662"
gz1="$(_compress_if_exists 'SRR22909662_1' || true)"
gz2="$(_compress_if_exists 'SRR22909662_2' || true)"
gzs="$(_compress_if_exists 'SRR22909662' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "YWHAG_293T.XL2_IP.A03.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.merged.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909663"
gz1="$(_compress_if_exists 'SRR22909663_1' || true)"
gz2="$(_compress_if_exists 'SRR22909663_2' || true)"
gzs="$(_compress_if_exists 'SRR22909663' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "YWHAG_293T.XL2_input.NIL.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909664"
gz1="$(_compress_if_exists 'SRR22909664_1' || true)"
gz2="$(_compress_if_exists 'SRR22909664_2' || true)"
gzs="$(_compress_if_exists 'SRR22909664' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "YWHAG_293T.XL1_IP.A01.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.merged.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909665"
gz1="$(_compress_if_exists 'SRR22909665_1' || true)"
gz2="$(_compress_if_exists 'SRR22909665_2' || true)"
gzs="$(_compress_if_exists 'SRR22909665' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "YWHAG_293T.XL1_input.NIL.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909666"
gz1="$(_compress_if_exists 'SRR22909666_1' || true)"
gz2="$(_compress_if_exists 'SRR22909666_2' || true)"
gzs="$(_compress_if_exists 'SRR22909666' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "HSP90a_293T.13_XL2_IP.A04.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.merged.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909667"
gz1="$(_compress_if_exists 'SRR22909667_1' || true)"
gz2="$(_compress_if_exists 'SRR22909667_2' || true)"
gzs="$(_compress_if_exists 'SRR22909667' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "HSP90a_293T.13_XL2_input.NIL.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909668"
gz1="$(_compress_if_exists 'SRR22909668_1' || true)"
gz2="$(_compress_if_exists 'SRR22909668_2' || true)"
gzs="$(_compress_if_exists 'SRR22909668' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "HSP90a_293T.13_XL1_IP.C01.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.merged.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909669"
gz1="$(_compress_if_exists 'SRR22909669_1' || true)"
gz2="$(_compress_if_exists 'SRR22909669_2' || true)"
gzs="$(_compress_if_exists 'SRR22909669' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "HSP90a_293T.13_XL1_input.NIL.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909670"
gz1="$(_compress_if_exists 'SRR22909670_1' || true)"
gz2="$(_compress_if_exists 'SRR22909670_2' || true)"
gzs="$(_compress_if_exists 'SRR22909670' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "100_to_225_v5_CLIP1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909671"
gz1="$(_compress_if_exists 'SRR22909671_1' || true)"
gz2="$(_compress_if_exists 'SRR22909671_2' || true)"
gzs="$(_compress_if_exists 'SRR22909671' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "75_to_150_v5_CLIP1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909672"
gz1="$(_compress_if_exists 'SRR22909672_1' || true)"
gz2="$(_compress_if_exists 'SRR22909672_2' || true)"
gzs="$(_compress_if_exists 'SRR22909672' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "50_to_125_v5_CLIP1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909673"
gz1="$(_compress_if_exists 'SRR22909673_1' || true)"
gz2="$(_compress_if_exists 'SRR22909673_2' || true)"
gzs="$(_compress_if_exists 'SRR22909673' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "25_to_100_v5_CLIP1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909674"
gz1="$(_compress_if_exists 'SRR22909674_1' || true)"
gz2="$(_compress_if_exists 'SRR22909674_2' || true)"
gzs="$(_compress_if_exists 'SRR22909674' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "NR5A1_DomainDeleted_rep2_redo20211215.NR5A1_DD_INPUT2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909675"
gz1="$(_compress_if_exists 'SRR22909675_1' || true)"
gz2="$(_compress_if_exists 'SRR22909675_2' || true)"
gzs="$(_compress_if_exists 'SRR22909675' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "NR5A1_DomainDeleted_rep2_redo20211215.NR5A1_DD_CLIP2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909676"
gz1="$(_compress_if_exists 'SRR22909676_1' || true)"
gz2="$(_compress_if_exists 'SRR22909676_2' || true)"
gzs="$(_compress_if_exists 'SRR22909676' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "NR5A1_DomainDeleted_rep1_redo20211215.NR5A1_DD_INPUT1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909677"
gz1="$(_compress_if_exists 'SRR22909677_1' || true)"
gz2="$(_compress_if_exists 'SRR22909677_2' || true)"
gzs="$(_compress_if_exists 'SRR22909677' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "NR5A1_DomainDeleted_rep1_redo20211215.NR5A1_DD_CLIP1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909678"
gz1="$(_compress_if_exists 'SRR22909678_1' || true)"
gz2="$(_compress_if_exists 'SRR22909678_2' || true)"
gzs="$(_compress_if_exists 'SRR22909678' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "NR5A1.NR5A1_INPUT2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909679"
gz1="$(_compress_if_exists 'SRR22909679_1' || true)"
gz2="$(_compress_if_exists 'SRR22909679_2' || true)"
gzs="$(_compress_if_exists 'SRR22909679' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "NR5A1.NR5A1_INPUT1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909680"
gz1="$(_compress_if_exists 'SRR22909680_1' || true)"
gz2="$(_compress_if_exists 'SRR22909680_2' || true)"
gzs="$(_compress_if_exists 'SRR22909680' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "NR5A1.NR5A1_CLIP2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909681"
gz1="$(_compress_if_exists 'SRR22909681_1' || true)"
gz2="$(_compress_if_exists 'SRR22909681_2' || true)"
gzs="$(_compress_if_exists 'SRR22909681' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "NR5A1.NR5A1_CLIP1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909682"
gz1="$(_compress_if_exists 'SRR22909682_1' || true)"
gz2="$(_compress_if_exists 'SRR22909682_2' || true)"
gzs="$(_compress_if_exists 'SRR22909682' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "INO80B_DomainDeleted_rep2.INO80B_DD_INPUT2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909683"
gz1="$(_compress_if_exists 'SRR22909683_1' || true)"
gz2="$(_compress_if_exists 'SRR22909683_2' || true)"
gzs="$(_compress_if_exists 'SRR22909683' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "INO80B_DomainDeleted_rep2.INO80B_DD_CLIP2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909684"
gz1="$(_compress_if_exists 'SRR22909684_1' || true)"
gz2="$(_compress_if_exists 'SRR22909684_2' || true)"
gzs="$(_compress_if_exists 'SRR22909684' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "INO80B_DomainDeleted_rep1.INO80B_DD_INPUT1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909685"
gz1="$(_compress_if_exists 'SRR22909685_1' || true)"
gz2="$(_compress_if_exists 'SRR22909685_2' || true)"
gzs="$(_compress_if_exists 'SRR22909685' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "INO80B_DomainDeleted_rep1.INO80B_DD_CLIP1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909686"
gz1="$(_compress_if_exists 'SRR22909686_1' || true)"
gz2="$(_compress_if_exists 'SRR22909686_2' || true)"
gzs="$(_compress_if_exists 'SRR22909686' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "INO80B.INO80B_INPUT2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909687"
gz1="$(_compress_if_exists 'SRR22909687_1' || true)"
gz2="$(_compress_if_exists 'SRR22909687_2' || true)"
gzs="$(_compress_if_exists 'SRR22909687' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "INO80B.INO80B_INPUT1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909688"
gz1="$(_compress_if_exists 'SRR22909688_1' || true)"
gz2="$(_compress_if_exists 'SRR22909688_2' || true)"
gzs="$(_compress_if_exists 'SRR22909688' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "INO80B.INO80B_CLIP2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909689"
gz1="$(_compress_if_exists 'SRR22909689_1' || true)"
gz2="$(_compress_if_exists 'SRR22909689_2' || true)"
gzs="$(_compress_if_exists 'SRR22909689' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "INO80B.INO80B_CLIP1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909690"
gz1="$(_compress_if_exists 'SRR22909690_1' || true)"
gz2="$(_compress_if_exists 'SRR22909690_2' || true)"
gzs="$(_compress_if_exists 'SRR22909690' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "YWHAH_293T.pcDNA6_IP.A04.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.merged.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909691"
gz1="$(_compress_if_exists 'SRR22909691_1' || true)"
gz2="$(_compress_if_exists 'SRR22909691_2' || true)"
gzs="$(_compress_if_exists 'SRR22909691' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "YWHAH_293T.pcDNA6_input.NIL.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909692"
gz1="$(_compress_if_exists 'SRR22909692_1' || true)"
gz2="$(_compress_if_exists 'SRR22909692_2' || true)"
gzs="$(_compress_if_exists 'SRR22909692' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "HSP90a_293T.pDEST_IP.A03.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.merged.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909693"
gz1="$(_compress_if_exists 'SRR22909693_1' || true)"
gz2="$(_compress_if_exists 'SRR22909693_2' || true)"
gzs="$(_compress_if_exists 'SRR22909693' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "HSP90a_293T.pDEST_input.NIL.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909694"
gz1="$(_compress_if_exists 'SRR22909694_1' || true)"
gz2="$(_compress_if_exists 'SRR22909694_2' || true)"
gzs="$(_compress_if_exists 'SRR22909694' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "YWHAZ_293T.XL2_IP.A04.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.merged.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909695"
gz1="$(_compress_if_exists 'SRR22909695_1' || true)"
gz2="$(_compress_if_exists 'SRR22909695_2' || true)"
gzs="$(_compress_if_exists 'SRR22909695' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "YWHAZ_293T.XL2_input.NIL.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909696"
gz1="$(_compress_if_exists 'SRR22909696_1' || true)"
gz2="$(_compress_if_exists 'SRR22909696_2' || true)"
gzs="$(_compress_if_exists 'SRR22909696' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "YWHAZ_293T.XL1_IP.A03.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.merged.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909697"
gz1="$(_compress_if_exists 'SRR22909697_1' || true)"
gz2="$(_compress_if_exists 'SRR22909697_2' || true)"
gzs="$(_compress_if_exists 'SRR22909697' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "YWHAZ_293T.XL1_input.NIL.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909698"
gz1="$(_compress_if_exists 'SRR22909698_1' || true)"
gz2="$(_compress_if_exists 'SRR22909698_2' || true)"
gzs="$(_compress_if_exists 'SRR22909698' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MCCC1_DD_rep3.MCCC1_INPUT3.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909699"
gz1="$(_compress_if_exists 'SRR22909699_1' || true)"
gz2="$(_compress_if_exists 'SRR22909699_2' || true)"
gzs="$(_compress_if_exists 'SRR22909699' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MCCC1_DD_rep3.MCCC1_CLIP3.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909700"
gz1="$(_compress_if_exists 'SRR22909700_1' || true)"
gz2="$(_compress_if_exists 'SRR22909700_2' || true)"
gzs="$(_compress_if_exists 'SRR22909700' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MCCC1_DD_rep2.MCCC1_INPUT2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909701"
gz1="$(_compress_if_exists 'SRR22909701_1' || true)"
gz2="$(_compress_if_exists 'SRR22909701_2' || true)"
gzs="$(_compress_if_exists 'SRR22909701' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MCCC1_DD_rep2.MCCC1_CLIP2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909702"
gz1="$(_compress_if_exists 'SRR22909702_1' || true)"
gz2="$(_compress_if_exists 'SRR22909702_2' || true)"
gzs="$(_compress_if_exists 'SRR22909702' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MCCC1_DD_rep1.MCCC1_INPUT1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909703"
gz1="$(_compress_if_exists 'SRR22909703_1' || true)"
gz2="$(_compress_if_exists 'SRR22909703_2' || true)"
gzs="$(_compress_if_exists 'SRR22909703' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MCCC1_DD_rep1.MCCC1_CLIP1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909704"
gz1="$(_compress_if_exists 'SRR22909704_1' || true)"
gz2="$(_compress_if_exists 'SRR22909704_2' || true)"
gzs="$(_compress_if_exists 'SRR22909704' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MCCC1_rep3.MCCC1_INPUT3.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909705"
gz1="$(_compress_if_exists 'SRR22909705_1' || true)"
gz2="$(_compress_if_exists 'SRR22909705_2' || true)"
gzs="$(_compress_if_exists 'SRR22909705' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MCCC1_rep3.MCCC1_CLIP3.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909706"
gz1="$(_compress_if_exists 'SRR22909706_1' || true)"
gz2="$(_compress_if_exists 'SRR22909706_2' || true)"
gzs="$(_compress_if_exists 'SRR22909706' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "YWHAE_293T.XL2_IP.C01.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.merged.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909707"
gz1="$(_compress_if_exists 'SRR22909707_1' || true)"
gz2="$(_compress_if_exists 'SRR22909707_2' || true)"
gzs="$(_compress_if_exists 'SRR22909707' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "YWHAE_293T.XL2_input.NIL.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909708"
gz1="$(_compress_if_exists 'SRR22909708_1' || true)"
gz2="$(_compress_if_exists 'SRR22909708_2' || true)"
gzs="$(_compress_if_exists 'SRR22909708' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "YWHAE_293T.XL1_IP.A01.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.merged.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909709"
gz1="$(_compress_if_exists 'SRR22909709_1' || true)"
gz2="$(_compress_if_exists 'SRR22909709_2' || true)"
gzs="$(_compress_if_exists 'SRR22909709' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "YWHAE_293T.XL1_input.NIL.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909710"
gz1="$(_compress_if_exists 'SRR22909710_1' || true)"
gz2="$(_compress_if_exists 'SRR22909710_2' || true)"
gzs="$(_compress_if_exists 'SRR22909710' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "YWHAH_293T.XL2_IP.C01.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.merged.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909711"
gz1="$(_compress_if_exists 'SRR22909711_1' || true)"
gz2="$(_compress_if_exists 'SRR22909711_2' || true)"
gzs="$(_compress_if_exists 'SRR22909711' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "YWHAH_293T.XL2_input.NIL.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909712"
gz1="$(_compress_if_exists 'SRR22909712_1' || true)"
gz2="$(_compress_if_exists 'SRR22909712_2' || true)"
gzs="$(_compress_if_exists 'SRR22909712' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "YWHAH_293T.XL1_IP.A04.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.merged.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909713"
gz1="$(_compress_if_exists 'SRR22909713_1' || true)"
gz2="$(_compress_if_exists 'SRR22909713_2' || true)"
gzs="$(_compress_if_exists 'SRR22909713' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "YWHAH_293T.XL1_input.NIL.r1.fqTrTr.sorted.STARUnmapped.out.sorted.STARAligned.outSo.rmDupSo.r2.bam.gz"
fi

fasterq-dump --split-files "SRR22909714"
gz1="$(_compress_if_exists 'SRR22909714_1' || true)"
gz2="$(_compress_if_exists 'SRR22909714_2' || true)"
gzs="$(_compress_if_exists 'SRR22909714' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "PIAS4_DomainDeleted_rep2.PIAS4_DD_INPUT2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909715"
gz1="$(_compress_if_exists 'SRR22909715_1' || true)"
gz2="$(_compress_if_exists 'SRR22909715_2' || true)"
gzs="$(_compress_if_exists 'SRR22909715' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "PIAS4_DomainDeleted_rep2.PIAS4_DD_CLIP2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909716"
gz1="$(_compress_if_exists 'SRR22909716_1' || true)"
gz2="$(_compress_if_exists 'SRR22909716_2' || true)"
gzs="$(_compress_if_exists 'SRR22909716' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "PIAS4_DomainDeleted_rep1.PIAS4_DD_INPUT1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909717"
gz1="$(_compress_if_exists 'SRR22909717_1' || true)"
gz2="$(_compress_if_exists 'SRR22909717_2' || true)"
gzs="$(_compress_if_exists 'SRR22909717' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "PIAS4_DomainDeleted_rep1.PIAS4_DD_CLIP1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909718"
gz1="$(_compress_if_exists 'SRR22909718_1' || true)"
gz2="$(_compress_if_exists 'SRR22909718_2' || true)"
gzs="$(_compress_if_exists 'SRR22909718' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "PIAS4.PIAS4_INPUT2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909719"
gz1="$(_compress_if_exists 'SRR22909719_1' || true)"
gz2="$(_compress_if_exists 'SRR22909719_2' || true)"
gzs="$(_compress_if_exists 'SRR22909719' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "PIAS4.PIAS4_INPUT1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909720"
gz1="$(_compress_if_exists 'SRR22909720_1' || true)"
gz2="$(_compress_if_exists 'SRR22909720_2' || true)"
gzs="$(_compress_if_exists 'SRR22909720' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "PIAS4.PIAS4_CLIP2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909721"
gz1="$(_compress_if_exists 'SRR22909721_1' || true)"
gz2="$(_compress_if_exists 'SRR22909721_2' || true)"
gzs="$(_compress_if_exists 'SRR22909721' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "PIAS4.PIAS4_CLIP1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909722"
gz1="$(_compress_if_exists 'SRR22909722_1' || true)"
gz2="$(_compress_if_exists 'SRR22909722_2' || true)"
gzs="$(_compress_if_exists 'SRR22909722' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MCCC1_rep2.MCCC1_INPUT2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909723"
gz1="$(_compress_if_exists 'SRR22909723_1' || true)"
gz2="$(_compress_if_exists 'SRR22909723_2' || true)"
gzs="$(_compress_if_exists 'SRR22909723' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MCCC1_rep2.MCCC1_CLIP2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909724"
gz1="$(_compress_if_exists 'SRR22909724_1' || true)"
gz2="$(_compress_if_exists 'SRR22909724_2' || true)"
gzs="$(_compress_if_exists 'SRR22909724' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MCCC1_rep1.MCCC1_INPUT1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909725"
gz1="$(_compress_if_exists 'SRR22909725_1' || true)"
gz2="$(_compress_if_exists 'SRR22909725_2' || true)"
gzs="$(_compress_if_exists 'SRR22909725' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MCCC1_rep1.MCCC1_CLIP1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909726"
gz1="$(_compress_if_exists 'SRR22909726_1' || true)"
gz2="$(_compress_if_exists 'SRR22909726_2' || true)"
gzs="$(_compress_if_exists 'SRR22909726' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ACTN3_DD_rep3.ACTN3_INPUT3.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909727"
gz1="$(_compress_if_exists 'SRR22909727_1' || true)"
gz2="$(_compress_if_exists 'SRR22909727_2' || true)"
gzs="$(_compress_if_exists 'SRR22909727' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ACTN3_DD_rep3.ACTN3_CLIP3.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909728"
gz1="$(_compress_if_exists 'SRR22909728_1' || true)"
gz2="$(_compress_if_exists 'SRR22909728_2' || true)"
gzs="$(_compress_if_exists 'SRR22909728' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ACTN3_DD_rep2.ACTN3_INPUT2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909729"
gz1="$(_compress_if_exists 'SRR22909729_1' || true)"
gz2="$(_compress_if_exists 'SRR22909729_2' || true)"
gzs="$(_compress_if_exists 'SRR22909729' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ACTN3_DD_rep2.ACTN3_CLIP2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909730"
gz1="$(_compress_if_exists 'SRR22909730_1' || true)"
gz2="$(_compress_if_exists 'SRR22909730_2' || true)"
gzs="$(_compress_if_exists 'SRR22909730' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ACTN3_DD_rep1.ACTN3_INPUT1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909731"
gz1="$(_compress_if_exists 'SRR22909731_1' || true)"
gz2="$(_compress_if_exists 'SRR22909731_2' || true)"
gzs="$(_compress_if_exists 'SRR22909731' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ACTN3_DD_rep1.ACTN3_CLIP1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909732"
gz1="$(_compress_if_exists 'SRR22909732_1' || true)"
gz2="$(_compress_if_exists 'SRR22909732_2' || true)"
gzs="$(_compress_if_exists 'SRR22909732' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ACTN3_rep3.ACTN3_INPUT3.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909733"
gz1="$(_compress_if_exists 'SRR22909733_1' || true)"
gz2="$(_compress_if_exists 'SRR22909733_2' || true)"
gzs="$(_compress_if_exists 'SRR22909733' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ACTN3_rep3.ACTN3_CLIP3.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909734"
gz1="$(_compress_if_exists 'SRR22909734_1' || true)"
gz2="$(_compress_if_exists 'SRR22909734_2' || true)"
gzs="$(_compress_if_exists 'SRR22909734' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ACTN3_rep2.ACTN3_INPUT2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909735"
gz1="$(_compress_if_exists 'SRR22909735_1' || true)"
gz2="$(_compress_if_exists 'SRR22909735_2' || true)"
gzs="$(_compress_if_exists 'SRR22909735' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ACTN3_rep2.ACTN3_CLIP2.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909736"
gz1="$(_compress_if_exists 'SRR22909736_1' || true)"
gz2="$(_compress_if_exists 'SRR22909736_2' || true)"
gzs="$(_compress_if_exists 'SRR22909736' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ACTN3_rep1.ACTN3_INPUT1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi

fasterq-dump --split-files "SRR22909737"
gz1="$(_compress_if_exists 'SRR22909737_1' || true)"
gz2="$(_compress_if_exists 'SRR22909737_2' || true)"
gzs="$(_compress_if_exists 'SRR22909737' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "ACTN3_rep1.ACTN3_CLIP1.umi.r1.fq.genome_mappedSoSo.rmDupSo.bam.gz"
fi


# Option B: Direct download (larger .sra files)
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909662/SRR22909662"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909663/SRR22909663"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909664/SRR22909664"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909665/SRR22909665"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909666/SRR22909666"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909667/SRR22909667"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909668/SRR22909668"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909669/SRR22909669"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909670/SRR22909670"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909671/SRR22909671"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909672/SRR22909672"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909673/SRR22909673"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909674/SRR22909674"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909675/SRR22909675"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909676/SRR22909676"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909677/SRR22909677"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909678/SRR22909678"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909679/SRR22909679"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909680/SRR22909680"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909681/SRR22909681"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909682/SRR22909682"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909683/SRR22909683"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909684/SRR22909684"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909685/SRR22909685"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909686/SRR22909686"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909687/SRR22909687"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909688/SRR22909688"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909689/SRR22909689"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909690/SRR22909690"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909691/SRR22909691"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909692/SRR22909692"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909693/SRR22909693"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909694/SRR22909694"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909695/SRR22909695"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909696/SRR22909696"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909697/SRR22909697"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909698/SRR22909698"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909699/SRR22909699"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909700/SRR22909700"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909701/SRR22909701"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909702/SRR22909702"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909703/SRR22909703"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909704/SRR22909704"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909705/SRR22909705"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909706/SRR22909706"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909707/SRR22909707"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909708/SRR22909708"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909709/SRR22909709"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909710/SRR22909710"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909711/SRR22909711"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909712/SRR22909712"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909713/SRR22909713"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909714/SRR22909714"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909715/SRR22909715"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909716/SRR22909716"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909717/SRR22909717"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909718/SRR22909718"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909719/SRR22909719"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909720/SRR22909720"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909721/SRR22909721"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909722/SRR22909722"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909723/SRR22909723"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909724/SRR22909724"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909725/SRR22909725"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909726/SRR22909726"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909727/SRR22909727"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909728/SRR22909728"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909729/SRR22909729"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909730/SRR22909730"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909731/SRR22909731"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909732/SRR22909732"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909733/SRR22909733"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909734/SRR22909734"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909735/SRR22909735"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909736/SRR22909736"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909737/SRR22909737"

# --- Additional data files ---
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909670/SRR22909670"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909673/SRR22909673"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909672/SRR22909672"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909671/SRR22909671"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909731/SRR22909731"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909730/SRR22909730"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909729/SRR22909729"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909728/SRR22909728"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909727/SRR22909727"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909726/SRR22909726"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909737/SRR22909737"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909736/SRR22909736"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909735/SRR22909735"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909734/SRR22909734"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909733/SRR22909733"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909732/SRR22909732"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909669/SRR22909669"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909668/SRR22909668"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909667/SRR22909667"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909666/SRR22909666"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909693/SRR22909693"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909692/SRR22909692"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909685/SRR22909685"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909684/SRR22909684"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909683/SRR22909683"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909682/SRR22909682"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909689/SRR22909689"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909688/SRR22909688"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909687/SRR22909687"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909686/SRR22909686"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909703/SRR22909703"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909702/SRR22909702"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909701/SRR22909701"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909700/SRR22909700"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909699/SRR22909699"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909698/SRR22909698"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909725/SRR22909725"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909724/SRR22909724"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909723/SRR22909723"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909722/SRR22909722"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909705/SRR22909705"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909704/SRR22909704"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909677/SRR22909677"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909676/SRR22909676"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909675/SRR22909675"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909674/SRR22909674"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909681/SRR22909681"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909680/SRR22909680"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909679/SRR22909679"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909678/SRR22909678"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909717/SRR22909717"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909716/SRR22909716"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909715/SRR22909715"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909714/SRR22909714"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909721/SRR22909721"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909720/SRR22909720"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909719/SRR22909719"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909718/SRR22909718"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909709/SRR22909709"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909708/SRR22909708"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909707/SRR22909707"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909706/SRR22909706"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909665/SRR22909665"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909664/SRR22909664"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909663/SRR22909663"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909662/SRR22909662"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909691/SRR22909691"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909690/SRR22909690"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909713/SRR22909713"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909712/SRR22909712"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909711/SRR22909711"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909710/SRR22909710"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909697/SRR22909697"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909696/SRR22909696"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909695/SRR22909695"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR22909694/SRR22909694"

echo "Download complete. Files saved to $OUTDIR"