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GSE86035

GSE GEO
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SONAR discovers RNA binding proteins from analysis of large-scale protein-protein interactomes.

Organism: Homo sapiens
Platform: GPL20301
Samples: 17
Experiment Types:
Other
Submitted: Aug 25 2016
Last Updated: May 15 2019
Status: Public on Oct 06 2016
Contact: Gene,,Yeo (UCSD)

Relations

BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA340076 SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP082930

Summary

RNA metabolism is controlled by an expanding yet incomplete catalog of RNA binding proteins (RBPs), many of which lack characterized RNA binding domains. Approaches to expand the RBP repertoire to discover non-canonical RBPs are currently needed. Here, HaloTag fusion pull-down of twelve nuclear and cytoplasmic RBPs followed by quantitative mass-spectrometry (MS) demonstrates that proteins interacting with multiple RBPs in an RNA-dependent manner are enriched for RBPs. This motivated SONAR, a computational approach that predicts RNA binding activity by analyzing large-scale affinity precipitation-MS protein-protein interactomes. Without relying on sequence or structure information, SONAR identifies 1923 human, 489 fly and 745 yeast RBPs, including over 100 human candidate RBPs that contain zinc finger domains. Enhanced CLIP confirms RNA binding activity and identifies transcriptome-wide RNA binding sites for SONAR-predicted RBPs, revealing unexpected RNA binding activity for disease-relevant proteins and DNA binding proteins.

Overall Design

eCLIP-seq was performed in biological replicate for AIFM1, NUMA1, RANGAP1, RNF219, VIM, ZNF184. Each sample has a size-matched input control for analysis

Analysis (32 steps)

View Data Processing
Processing steps for GSE86035
  1. Takes output from raw files.
  2. Run to trim off both 5’ and 3’ adapters on both reads.
  3. Command: quality-cutoff 6 -m 18 -a NNNNNAGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -g CTTCCGATCTACAAGTT -g CTTCCGATCTTGGTCCT -A AACTTGTAGATCGGA -A AGGACCAAGATCGGA -A ACTTGTAGATCGGAA -A GGACCAAGATCGGAA -A CTTGT AGATCGGAAG -A GACCAAGATCGGAAG -A TTGTAGATCGGAAGA -A ACCAAGATCGGAAGA -A TGTAGATCGGAAGAG -A CCAAGATCGGAAGAG -A GTAGATCGGAAGAGC -A CAAGATCGGAAGAGC -A TAGATCGGAAGAGCG -A AAGATCGGAAGAGCG -A AGATCGGAAGAGCGT -A GATCGGAAGAGCGTC -A ATCGGAAGAGCGTCG -A TCGGAAGAGCGTCGT -A CGGAAGAGCGTCGTG -A GGAAGAGCGTCGTGT -o /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.fastq.gz -p /full/path/to/files/file_R2.C01.fastq.gz.adapterTrim.fastq.gz /full/path/to/files/file_R1.C01.fastq.gz /full/path/to/files/file_R2.C01.fastq.gz > /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.metrics
  4. Takes output from cutadapt round 1.
  5. Run to trim off the 3’ adapters on read 2, to control for double ligation events.
  6. Command: cutadapt -f fastq --match-read-wildcards --times 1 -e 0.1 -O 5 --quality-cutoff 6 -m 18 -A AACTTGTAGATCGGA -A AGGACCAAGATCGGA -A ACTTGTAGATCGGAA -A GGACCAAGATCGGAA -A CTTGTAGATCGGAAG -A GACCAAGATCGGAAG -A TTGTAGATCGGAAGA -A ACCAAGATCGGAAGA -A TGTAGATCGGAAGAG -A CCAAGATCGGAAGAG -A GTAGATCGGAAGAGC -A CAAGATCGGAAGAGC -A TAGATCGGAAGAGCG -A AAGATCGGAAGAGCG -A AGATCGGAAGAGCGT -A GATCGGAAGAGCGTC -A ATCGGAAGAGCGTCG -A TCGGAAGAGCGTCGT -A CGGAAGAGCGTCGTG -A GGAAGAGCGTCGTGT -o /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.round2.fastq.gz -p /full/path/to/files/file_R2.C01.fastq.gz.adapterTrim.round2.fastq.gz /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.fastq.gz /full/path/to/files/file_R2.C01.fastq.gz.adapterTrim.fastq.gz > /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.round2.metrics
  7. Takes output from cutadapt round 2.
  8. Maps to human specific version of RepBase used to remove repetitive elements, helps control for spurious artifacts from rRNA (& other) repetitive reads.
Showing first 8 steps.

Supplementary Files (1)

GSE86035_RAW.tar Download
GEO Samples (17)
GSM2291979 GSM2291980 GSM2291981 GSM2291982 GSM2291983 GSM2291984 GSM2291985 GSM2291986 GSM2291987 GSM2291988 GSM2291989 GSM2291990 GSM2291991 GSM2291992 GSM2291993 GSM2291994 GSM2291995

Dataset Citations (1)

SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes.
PMID 27720645 · 2016 · Molecular cell
Kristopher W Brannan, Wenhao Jin, Stephanie C Huelga, Charles A S Banks, Joshua M Gilmore, Laurence Florens, Michael P Washburn, Eric L Van Nostrand, Gabriel A Pratt, Marie K Schwinn, Danette L Daniels, Gene W Yeo

SRA Experiments (17) and Runs (28)

Total: 9835 MB
SRX2052808 SRP082930 RIP-Seq PAIRED
GSM2291979: AIFM_eCLIP_Replicate1; Homo sapiens; RIP-Seq
Sample: SRS1644920
BioProject: PRJNA340076
BioSample: SAMN05631172
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: AIFM_eCLIP_Replicate1
antibody: AIFM
antibody manufacturer: Bethyl
antibody catalog: A302-782A
cell line: 293T
Original files (1)
AIFM_eCLIP_Replicate1
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR4063765 4026626 394609348 131.57 KB2_293_CLIP_AIFM_1_IP_TCCGGAGA-TATAGCCT_L008_R1.A01_KB2_AIFM_1_AIFM1… SRA
SRR4063766 3888015 381025470 130.76 KB2_293_CLIP_AIFM_1_IP_TCCGGAGA-TATAGCCT_L008_R1.B06_KB2_AIFM_1_AIFM1… SRA
SRX2052809 SRP082930 RIP-Seq PAIRED
GSM2291980: AIFM_eCLIP_Replicate2; Homo sapiens; RIP-Seq
Sample: SRS1644905
BioProject: PRJNA340076
BioSample: SAMN05631171
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: AIFM_eCLIP_Replicate2
antibody: AIFM
antibody manufacturer: Bethyl
antibody catalog: A302-782A
cell line: 293T
Original files (1)
AIFM_eCLIP_Replicate2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR4063767 10333989 1012730922 342.98 KB3_293_CLIP_AIFM_2_IP_TCCGGAGA-ATAGAGGC_L008_R1.C01_KB3_AIFM_2_AIFM1… SRA
SRR4063768 7838299 768153302 261.64 KB3_293_CLIP_AIFM_2_IP_TCCGGAGA-ATAGAGGC_L008_R1.D08fixed_KB3_AIFM_2_… SRA
SRX2052810 SRP082930 RIP-Seq PAIRED
GSM2291981: RNF219_Input; Homo sapiens; RIP-Seq
Sample: SRS1644921
BioProject: PRJNA340076
BioSample: SAMN05631170
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: RNF219_Input
antibody: null
cell line: 293T
Original files (1)
RNF219_Input
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4063769 17865347 1875861435 656.71 KB5_293_CLIP_RNF219_1_input_ATTACTCG-AGGCGAAG_L008_R1.unassigned.rand… SRA
SRX2052811 SRP082930 RIP-Seq PAIRED
GSM2291982: RANGAP_eCLIP_Replicate1; Homo sapiens; RIP-Seq
Sample: SRS1644906
BioProject: PRJNA340076
BioSample: SAMN05631169
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: RANGAP_eCLIP_Replicate1
antibody: RANGAP1
antibody manufacturer: Bethyl
antibody catalog: A302-026A
cell line: 293T
Original files (1)
RANGAP_eCLIP_Replicate1
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR4063770 6870105 673270290 219.47 KB6_293_CLIP_RANGAP_3_IP_CGCTCATT-TATAGCCT_L008_R1.C01_KB6_RANGAP_3_R… SRA
SRR4063771 7012019 687177862 230.13 KB6_293_CLIP_RANGAP_3_IP_CGCTCATT-TATAGCCT_L008_R1.D08fixed_KB6_RANGA… SRA
SRX2052812 SRP082930 RIP-Seq PAIRED
GSM2291983: RANGAP_eCLIP_Replicate2; Homo sapiens; RIP-Seq
Sample: SRS1644909
BioProject: PRJNA340076
BioSample: SAMN05631168
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: RANGAP_eCLIP_Replicate2
antibody: RANGAP1
antibody manufacturer: Bethyl
antibody catalog: A302-026A
cell line: 293T
Original files (1)
RANGAP_eCLIP_Replicate2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR4063772 7152470 700942060 229.14 KB7_293_CLIP_RANGAP_4_IP_CGCTCATT-TAATCTTA_L008_R1.C01_KB7_RANGAP_4_R… SRA
SRR4063773 5292435 518658630 175.25 KB7_293_CLIP_RANGAP_4_IP_CGCTCATT-TAATCTTA_L008_R1.D08fixed_KB7_RANGA… SRA
SRX2052813 SRP082930 RIP-Seq PAIRED
GSM2291984: RANGAP_input; Homo sapiens; RIP-Seq
Sample: SRS1644911
BioProject: PRJNA340076
BioSample: SAMN05631167
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: RANGAP_input
antibody: null
cell line: 293T
Original files (1)
RANGAP_input
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4063774 19396533 2036635965 704.33 KB8_293_CLIP_RANGAP_2_input_ATTCAGAA-CCTATCCT_L008_R1.unassigned.rand… SRA
SRX2052814 SRP082930 RIP-Seq PAIRED
GSM2291985: NUMA_eCLIP_Replicate1; Homo sapiens; RIP-Seq
Sample: SRS1644907
BioProject: PRJNA340076
BioSample: SAMN05631166
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: NUMA_eCLIP_Replicate1
antibody: NUMA1
antibody manufacturer: Bethyl
antibody catalog: A301-510A
cell line: 293T
Original files (1)
NUMA_eCLIP_Replicate1
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR4063775 4276827 419129046 139.54 KB9_293_CLIP_NUMA_1_IP_GAATTCGT-GGCTCTGA_L008_R1.A01_KB9_NUMA_1_NUMA1… SRA
SRR4063776 6528985 639840530 219.8 KB9_293_CLIP_NUMA_1_IP_GAATTCGT-GGCTCTGA_L008_R1.B06_KB9_NUMA_1_NUMA1… SRA
SRX2052815 SRP082930 RIP-Seq PAIRED
GSM2291986: NUMA_eCLIP_Replicate2; Homo sapiens; RIP-Seq
Sample: SRS1644910
BioProject: PRJNA340076
BioSample: SAMN05631182
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: NUMA_eCLIP_Replicate2
antibody: NUMA1
antibody manufacturer: Bethyl
antibody catalog: A301-510A
cell line: 293T
Original files (1)
NUMA_eCLIP_Replicate2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR4063777 3364846 329754908 108.47 KB10_293_CLIP_NUMA_2_IP_ATTACTCG-CCTATCCT_L008_R1.A01_KB10_NUMA_2_NUM… SRA
SRR4063778 5713902 559962396 191.75 KB10_293_CLIP_NUMA_2_IP_ATTACTCG-CCTATCCT_L008_R1.B06_KB10_NUMA_2_NUM… SRA
SRX2052816 SRP082930 RIP-Seq PAIRED
GSM2291987: NUMA_input; Homo sapiens; RIP-Seq
Sample: SRS1644916
BioProject: PRJNA340076
BioSample: SAMN05631181
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: NUMA_input
antibody: null
cell line: 293T
Original files (1)
NUMA_input
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4063779 17854574 1874730270 652.7 KB11_293_CLIP_NUMA_1_input_TCCGGAGA-AGGCGAAG_L008_R1.unassigned.rando… SRA
SRX2052817 SRP082930 RIP-Seq PAIRED
GSM2291988: AIFM_input; Homo sapiens; RIP-Seq
Sample: SRS1644915
BioProject: PRJNA340076
BioSample: SAMN05631180
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: AIFM_input
antibody: null
cell line: 293T
Original files (1)
AIFM_input
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4063780 10276666 1079049930 377.3 KB12_293_CLIP_AIFM_1_IP_ATTACTCG-CCTATCCT_L006_R1.unassigned.randomer… SRA
SRX2052818 SRP082930 RIP-Seq PAIRED
GSM2291989: RNF219_eCLIP_Replicate1; Homo sapiens; RIP-Seq
Sample: SRS1644908
BioProject: PRJNA340076
BioSample: SAMN05631179
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: RNF219_eCLIP_Replicate1
antibody: RNF219
antibody manufacturer: Bethyl
antibody catalog: A302-540A
cell line: 293T
Original files (1)
RNF219_eCLIP_Replicate1
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR4063781 3756224 368109952 136.23 KB16_293_CLIP_RNF219_3_GAATTCGT-AGGCGAAG_L007_R1.C01_KB16_RNF219_3_RN… SRA
SRR4063782 4779894 468429612 178.26 KB16_293_CLIP_RNF219_3_GAATTCGT-AGGCGAAG_L007_R1.D08fixed_KB16_RNF219… SRA
SRX2052819 SRP082930 RIP-Seq PAIRED
GSM2291990: VIM_eCLIP_Replicate1; Homo sapiens; RIP-Seq
Sample: SRS1644912
BioProject: PRJNA340076
BioSample: SAMN05631178
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: VIM_eCLIP_Replicate1
antibody: VIM
antibody manufacturer: Bethyl
antibody catalog: A301-620A
cell line: 293T
Original files (1)
VIM_eCLIP_Replicate1
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR4063783 5934801 581610498 215.76 KB20_293_CLIP_VIM_1_GAATTCGT-ATAGAGGC_L007_R1.C01_KB20_VIM_1_VIM.rand… SRA
SRR4063784 2398278 235031244 89.33 KB20_293_CLIP_VIM_1_GAATTCGT-ATAGAGGC_L007_R1.D08fixed_KB20_VIM_1_VIM… SRA
SRX2052820 SRP082930 RIP-Seq PAIRED
GSM2291991: VIM_eCLIP_Replicate2; Homo sapiens; RIP-Seq
Sample: SRS1644913
BioProject: PRJNA340076
BioSample: SAMN05631177
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: VIM_eCLIP_Replicate2
antibody: VIM
antibody manufacturer: Bethyl
antibody catalog: A301-620A
cell line: 293T
Original files (1)
VIM_eCLIP_Replicate2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR4063785 6987417 684766866 256.42 KB21_293_CLIP_VIM_2_CGCTCATT-ATAGAGGC_L007_R1.C01_KB21P_VIM_2_VIM.ran… SRA
SRR4063786 2980882 292126436 112.04 KB21_293_CLIP_VIM_2_CGCTCATT-ATAGAGGC_L007_R1.D08fixed_KB21P_VIM_2_VI… SRA
SRX2052821 SRP082930 RIP-Seq PAIRED
GSM2291992: VIM_input; Homo sapiens; RIP-Seq
Sample: SRS1644914
BioProject: PRJNA340076
BioSample: SAMN05631176
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: VIM_input
antibody: null
cell line: 293T
Original files (1)
VIM_input
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4063787 17093709 1794839445 682.35 KB22_293_CLIP_VIM_input_CGCTCATT-TAATCTTA_L007_R1.unassigned.randomer… SRA
SRX2052822 SRP082930 RIP-Seq PAIRED
GSM2291993: ZNF184_input; Homo sapiens; RIP-Seq
Sample: SRS1644917
BioProject: PRJNA340076
BioSample: SAMN05631175
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: ZNF184_input
antibody: null
cell line: 293T
Original files (1)
ZNF184_input
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4063788 31801837 3816220440 1300.01 KB23_293_INPUT_ZNF184_S70_L008_R1_001.unassigned.randomer.fastq.gz, K… SRA
SRX2052823 SRP082930 RIP-Seq PAIRED
GSM2291994: ZNF184_eCLIP_Replicate1; Homo sapiens; RIP-Seq
Sample: SRS1644918
BioProject: PRJNA340076
BioSample: SAMN05631174
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: ZNF184_eCLIP_Replicate1
antibody: ZNF184
antibody manufacturer: Bethyl
antibody catalog: A303-738A
cell line: 293T
Original files (1)
ZNF184_eCLIP_Replicate1
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR4063789 11641687 1315510631 433.86 KB24_293_CLIP_ZNF184_S71_L008_R1_001.A01_KB24_ZNF184_1_ZNF184.randome… SRA
SRR4063790 14784828 1670685564 551.0 KB24_293_CLIP_ZNF184_S71_L008_R1_001.B06_KB24_ZNF184_1_ZNF184.randome… SRA
SRX2052824 SRP082930 RIP-Seq PAIRED
GSM2291995: ZNF184_eCLIP_Replicate2; Homo sapiens; RIP-Seq
Sample: SRS1644919
BioProject: PRJNA340076
BioSample: SAMN05631173
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: ZNF184_eCLIP_Replicate2
antibody: ZNF184
antibody manufacturer: Bethyl
antibody catalog: A303-738A
cell line: 293T
Original files (1)
ZNF184_eCLIP_Replicate2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR4063791 20656654 2334201902 770.49 KB25_293_CLIP_ZNF184_S72_L008_R1_001.C01_KB25_ZNF184_2_ZNF184.randome… SRA
SRR4063792 9062864 1024103632 337.86 KB25_293_CLIP_ZNF184_S72_L008_R1_001.D08fixed_KB25_ZNF184_2_ZNF184.ra… SRA

Linked Publications (1)

SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes.
Molecular cell · 2016

Potentially Related Publications (1)

This accession was text-mined from the PMC full text of these publications. It may be referenced for comparison or reused from another study rather than generated for them.

SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes.
Molecular cell · 2016

Data Files (60)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— KB10_293_CLIP_NUMA_2_IP_ATTACTCG-CCTATCCT_L008_R1.A01_… RIP-Seq 108.5 MB link
— KB10_293_CLIP_NUMA_2_IP_ATTACTCG-CCTATCCT_L008_R1.B06_… RIP-Seq 191.8 MB link
— KB10_293_CLIP_NUMA_2_IP_ATTACTCG-CCTATCCT_L008_R2.B06_… RIP-Seq 191.8 MB link
— KB11_293_CLIP_NUMA_1_input_TCCGGAGA-AGGCGAAG_L008_R1.u… RIP-Seq 652.7 MB link
— KB12_293_CLIP_AIFM_1_IP_ATTACTCG-CCTATCCT_L006_R1.unas… RIP-Seq 377.3 MB link
— KB16_293_CLIP_RNF219_3_GAATTCGT-AGGCGAAG_L007_R1.C01_K… RIP-Seq 136.2 MB link
— KB16_293_CLIP_RNF219_3_GAATTCGT-AGGCGAAG_L007_R1.D08fi… RIP-Seq 178.3 MB link
— KB20_293_CLIP_VIM_1_GAATTCGT-ATAGAGGC_L007_R1.C01_KB20… RIP-Seq 215.8 MB link
— KB20_293_CLIP_VIM_1_GAATTCGT-ATAGAGGC_L007_R1.D08fixed… RIP-Seq 89.3 MB link
— KB21_293_CLIP_VIM_2_CGCTCATT-ATAGAGGC_L007_R1.C01_KB21… RIP-Seq 256.4 MB link
— KB21_293_CLIP_VIM_2_CGCTCATT-ATAGAGGC_L007_R1.D08fixed… RIP-Seq 112.0 MB link
— KB22_293_CLIP_VIM_input_CGCTCATT-TAATCTTA_L007_R1.unas… RIP-Seq 682.3 MB link
— KB2_293_CLIP_AIFM_1_IP_TCCGGAGA-TATAGCCT_L008_R1.A01_K… RIP-Seq 131.6 MB link
— KB2_293_CLIP_AIFM_1_IP_TCCGGAGA-TATAGCCT_L008_R1.B06_K… RIP-Seq 130.8 MB link
— KB23_293_INPUT_ZNF184_S70_L008_R1_001.unassigned.rando… RIP-Seq 1.3 GB link
— KB24_293_CLIP_ZNF184_S71_L008_R1_001.A01_KB24_ZNF184_1… RIP-Seq 433.9 MB link
— KB24_293_CLIP_ZNF184_S71_L008_R1_001.B06_KB24_ZNF184_1… RIP-Seq 551.0 MB link
— KB25_293_CLIP_ZNF184_S72_L008_R1_001.C01_KB25_ZNF184_2… RIP-Seq 770.5 MB link
— KB25_293_CLIP_ZNF184_S72_L008_R1_001.D08fixed_KB25_ZNF… RIP-Seq 337.9 MB link
— KB3_293_CLIP_AIFM_2_IP_TCCGGAGA-ATAGAGGC_L008_R1.C01_K… RIP-Seq 343.0 MB link
— KB3_293_CLIP_AIFM_2_IP_TCCGGAGA-ATAGAGGC_L008_R1.D08fi… RIP-Seq 261.6 MB link
— KB5_293_CLIP_RNF219_1_input_ATTACTCG-AGGCGAAG_L008_R1.… RIP-Seq 656.7 MB link
— KB6_293_CLIP_RANGAP_3_IP_CGCTCATT-TATAGCCT_L008_R1.C01… RIP-Seq 219.5 MB link
— KB6_293_CLIP_RANGAP_3_IP_CGCTCATT-TATAGCCT_L008_R1.D08… RIP-Seq 230.1 MB link
— KB7_293_CLIP_RANGAP_4_IP_CGCTCATT-TAATCTTA_L008_R1.C01… RIP-Seq 229.1 MB link
— KB7_293_CLIP_RANGAP_4_IP_CGCTCATT-TAATCTTA_L008_R1.D08… RIP-Seq 175.2 MB link
— KB7_293_CLIP_RANGAP_4_IP_CGCTCATT-TAATCTTA_L008_R2.C01… RIP-Seq 229.1 MB link
— KB8_293_CLIP_RANGAP_2_input_ATTCAGAA-CCTATCCT_L008_R1.… RIP-Seq 704.3 MB link
— KB9_293_CLIP_NUMA_1_IP_GAATTCGT-GGCTCTGA_L008_R1.A01_K… RIP-Seq 139.5 MB link
— KB9_293_CLIP_NUMA_1_IP_GAATTCGT-GGCTCTGA_L008_R1.B06_K… RIP-Seq 219.8 MB link
— SRR4063765_GSM2291979 RIP-Seq 131.0 MB link
— SRR4063766_GSM2291979 RIP-Seq 130.0 MB link
— SRR4063767_GSM2291980 RIP-Seq 342.0 MB link
— SRR4063768_GSM2291980 RIP-Seq 261.0 MB link
— SRR4063769_GSM2291981 RIP-Seq 656.0 MB link
— SRR4063770_GSM2291982 RIP-Seq 219.0 MB link
— SRR4063771_GSM2291982 RIP-Seq 230.0 MB link
— SRR4063772_GSM2291983 RIP-Seq 229.0 MB link
— SRR4063773_GSM2291983 RIP-Seq 175.0 MB link
— SRR4063774 RIP-Seq 704.3 MB link
— SRR4063774_GSM2291984 RIP-Seq 704.0 MB link
— SRR4063775_GSM2291985 RIP-Seq 139.0 MB link
— SRR4063776_GSM2291985 RIP-Seq 219.0 MB link
— SRR4063777_GSM2291986 RIP-Seq 108.0 MB link
— SRR4063778_GSM2291986 RIP-Seq 191.0 MB link
— SRR4063779_GSM2291987 RIP-Seq 652.0 MB link
— SRR4063780_GSM2291988 RIP-Seq 377.0 MB link
— SRR4063781_GSM2291989 RIP-Seq 136.0 MB link
— SRR4063782_GSM2291989 RIP-Seq 178.0 MB link
— SRR4063783_GSM2291990 RIP-Seq 215.0 MB link
— SRR4063784_GSM2291990 RIP-Seq 89.0 MB link
— SRR4063785_GSM2291991 RIP-Seq 256.0 MB link
— SRR4063786_GSM2291991 RIP-Seq 112.0 MB link
— SRR4063787_GSM2291992 RIP-Seq 682.0 MB link
— SRR4063788_GSM2291993 RIP-Seq 1.3 GB link
— SRR4063789 RIP-Seq 433.9 MB link
— SRR4063789_GSM2291994 RIP-Seq 433.0 MB link
— SRR4063790_GSM2291994 RIP-Seq 551.0 MB link
— SRR4063791_GSM2291995 RIP-Seq 770.0 MB link
— SRR4063792_GSM2291995 RIP-Seq 337.0 MB link