RNA-Targeting CRISPR/Cas13d System Alleviates Disease-Related Phenotypes in Pre-clinical Models of Huntingtonâs Disease (Human).
Organism:
Homo sapiens
Platform:
GPL18573
Samples:
48
Experiment Types:
Expression profiling by high throughput sequencing
Submitted:
Sep 24 2022
Last Updated:
Jan 25 2023
Status:
Public on Nov 15 2022
Contact:
Gene,,Yeo (UCSD)
Relations
SubSeries of: GSE214110
BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA883962
Summary
Huntington's disease (HD) is a fatal, dominantly inherited neurodegenerative disorder caused by a CAG trinucleotide expansion in exon 1 of the huntingtin (HTT) gene. Although the pathogenesis of HD remains complex, the CAG-expanded (CAGEX) HTT mRNA and protein ultimately causes disease through a toxic gain-of-function mechanism. As the reduction of pathogenic mutant HTT mRNA is beneficial as a treatment, we developed a mutant allele-sensitive CAGEX RNA-targeting CRISPR-Cas13d system (Cas13d/CAGEX) that eliminates toxic CAGEX RNA in HD patient-derived fibroblasts and iPSC-derived striatal neurons. We show that intrastriatal delivery of Cas13d/CAGEX via a single adeno-associated viral vector, serotype 9 (AAV9) mediates significant and selective reduction of mutant HTT mRNA and protein levels within the striatum of heterozygous zQ175 mice, an established mouse model of HD. Moreover, the reduction of mutant HTT mRNA renders a sustained partial reversal of HD phenotypes, including improved motor coordination, attenuated striatal atrophy, and reduction of mutant HTT protein aggregates. Importantly, phenotypic improvements were durable for at least 8 months without gross or behavioral adverse effects, and with minimal off-target interactions of Cas13d/CAGEX in the mouse transcriptome. Taken together, we demonstrate a proof-of-principle of an RNA-targeting CRISPR/Cas13d system as a therapeutic approach for HD, a strategy with broad implications for the treatment of other dominantly inherited neurodegenerative disorders.
Overall Design
Comparative gene expression profiling analysis of RNA-seq data for HD and control iPSC-derived neurons treated with Cad13/NT or Cas13d/CAGEX
SRA Experiments (48) and Runs (48)
Total: 122663 MB
GSM6599187: HD109_L_1; Homo sapiens; RNA-Seq
Sample: SRS15225400
BioProject: PRJNA883962
BioSample: SAMN31003960
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD109
cell line: HD109
cell type: striatal neurons
genotype: HD
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21697009 |
90136172 |
18207506744 |
5504.19 |
109-L_1_S1_L001_R1_001.fastq.gz, 109-L_1_S1_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599188: HD109_L_2; Homo sapiens; RNA-Seq
Sample: SRS15225401
BioProject: PRJNA883962
BioSample: SAMN31003959
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD109
cell line: HD109
cell type: striatal neurons
genotype: HD
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21697008 |
82985485 |
16763067970 |
5000.46 |
109-L_2_S2_L001_R1_001.fastq.gz, 109-L_2_S2_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599189: HD109_L_3; Homo sapiens; RNA-Seq
Sample: SRS15225402
BioProject: PRJNA883962
BioSample: SAMN31003958
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD109
cell line: HD109
cell type: striatal neurons
genotype: HD
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21697007 |
1737959 |
351067718 |
106.57 |
109-L_3_S3_L001_R1_001.fastq.gz, 109-L_3_S3_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599190: HD109_L_4; Homo sapiens; RNA-Seq
Sample: SRS15225403
BioProject: PRJNA883962
BioSample: SAMN31003957
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD109
cell line: HD109
cell type: striatal neurons
genotype: HD
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21697006 |
106142375 |
21440759750 |
6422.23 |
109-L_4_S4_L001_R1_001.fastq.gz, 109-L_4_S4_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599191: HD109_T_1; Homo sapiens; RNA-Seq
Sample: SRS15225404
BioProject: PRJNA883962
BioSample: SAMN31003956
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD109
cell line: HD109
cell type: striatal neurons
genotype: HD
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21697005 |
28493706 |
5755728612 |
1717.27 |
109-T_1_S5_L001_R1_001.fastq.gz, 109-T_1_S5_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599192: HD109_T_2; Homo sapiens; RNA-Seq
Sample: SRS15225405
BioProject: PRJNA883962
BioSample: SAMN31003955
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD109
cell line: HD109
cell type: striatal neurons
genotype: HD
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21697004 |
55546587 |
11220410574 |
3384.56 |
109-T_2_S6_L001_R1_001.fastq.gz, 109-T_2_S6_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599193: HD109_T_3; Homo sapiens; RNA-Seq
Sample: SRS15225406
BioProject: PRJNA883962
BioSample: SAMN31003954
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD109
cell line: HD109
cell type: striatal neurons
genotype: HD
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21697003 |
50200091 |
10140418382 |
3055.09 |
109-T_3_S7_L001_R1_001.fastq.gz, 109-T_3_S7_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599194: HD109_T_4; Homo sapiens; RNA-Seq
Sample: SRS15225407
BioProject: PRJNA883962
BioSample: SAMN31003953
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD109
cell line: HD109
cell type: striatal neurons
genotype: HD
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21697002 |
23667087 |
4780751574 |
1444.46 |
109-T_4_S8_L001_R1_001.fastq.gz, 109-T_4_S8_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599195: HD66_L_1; Homo sapiens; RNA-Seq
Sample: SRS15225408
BioProject: PRJNA883962
BioSample: SAMN31003952
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD66
cell line: HD66
cell type: striatal neurons
genotype: HD
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21697001 |
101715497 |
20546530394 |
6163.67 |
66-L_1_S13_L001_R1_001.fastq.gz, 66-L_1_S13_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599196: HD66_L_2; Homo sapiens; RNA-Seq
Sample: SRS15225409
BioProject: PRJNA883962
BioSample: SAMN31003951
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD66
cell line: HD66
cell type: striatal neurons
genotype: HD
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21697000 |
58266678 |
11769868956 |
3538.17 |
66-L_2_S14_L001_R1_001.fastq.gz, 66-L_2_S14_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599197: HD66_L_3; Homo sapiens; RNA-Seq
Sample: SRS15225410
BioProject: PRJNA883962
BioSample: SAMN31003950
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD66
cell line: HD66
cell type: striatal neurons
genotype: HD
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696999 |
25876202 |
5226992804 |
1584.88 |
66-L_3_S15_L001_R1_001.fastq.gz, 66-L_3_S15_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599198: HD66_L_4; Homo sapiens; RNA-Seq
Sample: SRS15225411
BioProject: PRJNA883962
BioSample: SAMN31003949
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD66
cell line: HD66
cell type: striatal neurons
genotype: HD
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696998 |
84146700 |
16997633400 |
5103.14 |
66-L_4_S16_L001_R1_001.fastq.gz, 66-L_4_S16_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599199: HD66_T_1; Homo sapiens; RNA-Seq
Sample: SRS15225412
BioProject: PRJNA883962
BioSample: SAMN31003948
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD66
cell line: HD66
cell type: striatal neurons
genotype: HD
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696997 |
26892467 |
5432278334 |
1631.42 |
66-T_1_S17_L001_R1_001.fastq.gz, 66-T_1_S17_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599200: HD66_T_2; Homo sapiens; RNA-Seq
Sample: SRS15225413
BioProject: PRJNA883962
BioSample: SAMN31003947
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD66
cell line: HD66
cell type: striatal neurons
genotype: HD
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696996 |
62437539 |
12612382878 |
3766.83 |
66-T_2_S18_L001_R1_001.fastq.gz, 66-T_2_S18_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599201: HD66_T_3; Homo sapiens; RNA-Seq
Sample: SRS15225414
BioProject: PRJNA883962
BioSample: SAMN31003946
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD66
cell line: HD66
cell type: striatal neurons
genotype: HD
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696995 |
47395641 |
9573919482 |
2900.0 |
66-T_3_S19_L001_R1_001.fastq.gz, 66-T_3_S19_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599202: HD66_T_4; Homo sapiens; RNA-Seq
Sample: SRS15225415
BioProject: PRJNA883962
BioSample: SAMN31003945
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD66
cell line: HD66
cell type: striatal neurons
genotype: HD
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696994 |
70728109 |
14287078018 |
4281.07 |
66-T_4_S20_L001_R1_001.fastq.gz, 66-T_4_S20_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599203: HD77_L_1; Homo sapiens; RNA-Seq
Sample: SRS15225416
BioProject: PRJNA883962
BioSample: SAMN31003944
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD77
cell line: HD77
cell type: striatal neurons
genotype: HD
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696993 |
42661012 |
8617524424 |
2570.24 |
71-L_1_S25_L001_R1_001.fastq.gz, 71-L_1_S25_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599204: HD77_L_2; Homo sapiens; RNA-Seq
Sample: SRS15225417
BioProject: PRJNA883962
BioSample: SAMN31003943
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD77
cell line: HD77
cell type: striatal neurons
genotype: HD
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696992 |
14882475 |
3006259950 |
908.89 |
71-L_2_S26_L001_R1_001.fastq.gz, 71-L_2_S26_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599205: HD77_L_3; Homo sapiens; RNA-Seq
Sample: SRS15225418
BioProject: PRJNA883962
BioSample: SAMN31003942
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD77
cell line: HD77
cell type: striatal neurons
genotype: HD
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696991 |
15940985 |
3220078970 |
989.31 |
71-L_3_S27_L001_R1_001.fastq.gz, 71-L_3_S27_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599206: HD77_L_4; Homo sapiens; RNA-Seq
Sample: SRS15225419
BioProject: PRJNA883962
BioSample: SAMN31003941
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD77
cell line: HD77
cell type: striatal neurons
genotype: HD
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696990 |
29020827 |
5862207054 |
1787.21 |
71-L_4_S28_L001_R1_001.fastq.gz, 71-L_4_S28_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599207: HD77_T_1; Homo sapiens; RNA-Seq
Sample: SRS15225420
BioProject: PRJNA883962
BioSample: SAMN31003940
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD77
cell line: HD77
cell type: striatal neurons
genotype: HD
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696989 |
16586211 |
3350414622 |
1020.7 |
71-T_1_S29_L001_R1_001.fastq.gz, 71-T_1_S29_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599208: HD77_T_2; Homo sapiens; RNA-Seq
Sample: SRS15225421
BioProject: PRJNA883962
BioSample: SAMN31003939
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD77
cell line: HD77
cell type: striatal neurons
genotype: HD
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696988 |
29876048 |
6034961696 |
1819.37 |
71-T_2_S30_L001_R1_001.fastq.gz, 71-T_2_S30_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599209: HD77_T_3; Homo sapiens; RNA-Seq
Sample: SRS15225422
BioProject: PRJNA883962
BioSample: SAMN31003938
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD77
cell line: HD77
cell type: striatal neurons
genotype: HD
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696987 |
70586816 |
14258536832 |
4295.29 |
71-T_3_S31_L001_R1_001.fastq.gz, 71-T_3_S31_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599210: HD77_T_4; Homo sapiens; RNA-Seq
Sample: SRS15225423
BioProject: PRJNA883962
BioSample: SAMN31003937
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HD77
cell line: HD77
cell type: striatal neurons
genotype: HD
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696986 |
46662256 |
9425775712 |
2840.75 |
71-T_4_S32_L001_R1_001.fastq.gz, 71-T_4_S32_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599211: Control1_L_1; Homo sapiens; RNA-Seq
Sample: SRS15225424
BioProject: PRJNA883962
BioSample: SAMN31003936
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 1
cell line: Control 1
cell type: striatal neurons
genotype: Control
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696985 |
39400690 |
7958939380 |
2398.22 |
C1-L_1_S37_L001_R1_001.fastq.gz, C1-L_1_S37_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599212: Control1_L_2; Homo sapiens; RNA-Seq
Sample: SRS15225425
BioProject: PRJNA883962
BioSample: SAMN31003935
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 1
cell line: Control 1
cell type: striatal neurons
genotype: Control
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696984 |
17717176 |
3578869552 |
1079.54 |
C1-L_2_S38_L001_R1_001.fastq.gz, C1-L_2_S38_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599213: Control1_L_3; Homo sapiens; RNA-Seq
Sample: SRS15225426
BioProject: PRJNA883962
BioSample: SAMN31003934
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 1
cell line: Control 1
cell type: striatal neurons
genotype: Control
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696983 |
19137323 |
3865739246 |
1166.6 |
C1-L_3_S39_L001_R1_001.fastq.gz, C1-L_3_S39_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599214: Control1_L_4; Homo sapiens; RNA-Seq
Sample: SRS15225427
BioProject: PRJNA883962
BioSample: SAMN31003933
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 1
cell line: Control 1
cell type: striatal neurons
genotype: Control
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696982 |
29867918 |
6033319436 |
1827.43 |
C1-L_4_S40_L001_R1_001.fastq.gz, C1-L_4_S40_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599215: Control1_T_1; Homo sapiens; RNA-Seq
Sample: SRS15225428
BioProject: PRJNA883962
BioSample: SAMN31003932
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 1
cell line: Control 1
cell type: striatal neurons
genotype: Control
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696981 |
23900286 |
4827857772 |
1446.53 |
C1-T_1_S41_L001_R1_001.fastq.gz, C1-T_1_S41_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599216: Control1_T_2; Homo sapiens; RNA-Seq
Sample: SRS15225429
BioProject: PRJNA883962
BioSample: SAMN31003931
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 1
cell line: Control 1
cell type: striatal neurons
genotype: Control
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696980 |
77690571 |
15693495342 |
4676.72 |
C1-T_2_S42_L001_R1_001.fastq.gz, C1-T_2_S42_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599217: Control1_T_3; Homo sapiens; RNA-Seq
Sample: SRS15225430
BioProject: PRJNA883962
BioSample: SAMN31003930
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 1
cell line: Control 1
cell type: striatal neurons
genotype: Control
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696979 |
11691784 |
2361740368 |
711.2 |
C1-T_3_S43_L001_R1_001.fastq.gz, C1-T_3_S43_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599218: Control1_T_4; Homo sapiens; RNA-Seq
Sample: SRS15225431
BioProject: PRJNA883962
BioSample: SAMN31003929
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 1
cell line: Control 1
cell type: striatal neurons
genotype: Control
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696978 |
42932148 |
8672293896 |
2581.62 |
C1-T_4_S44_L001_R1_001.fastq.gz, C1-T_4_S44_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599219: Control2_L_1; Homo sapiens; RNA-Seq
Sample: SRS15225432
BioProject: PRJNA883962
BioSample: SAMN31003928
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 2
cell line: Control 2
cell type: striatal neurons
genotype: Control
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696977 |
27425542 |
5539959484 |
1733.51 |
C2-L_1_S49_L001_R1_001.fastq.gz, C2-L_1_S49_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599220: Control2_L_2; Homo sapiens; RNA-Seq
Sample: SRS15225433
BioProject: PRJNA883962
BioSample: SAMN31003927
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 2
cell line: Control 2
cell type: striatal neurons
genotype: Control
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696976 |
35051699 |
7080443198 |
2151.3 |
C2-L_2_S50_L001_R1_001.fastq.gz, C2-L_2_S50_L001_R2_001.fastq.gz, SRR…
|
SRA
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GSM6599221: Control2_L_3; Homo sapiens; RNA-Seq
Sample: SRS15225434
BioProject: PRJNA883962
BioSample: SAMN31003926
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 2
cell line: Control 2
cell type: striatal neurons
genotype: Control
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696975 |
12157782 |
2455871964 |
747.58 |
C2-L_3_S51_L001_R1_001.fastq.gz, C2-L_3_S51_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599222: Control2_L_4; Homo sapiens; RNA-Seq
Sample: SRS15225435
BioProject: PRJNA883962
BioSample: SAMN31003925
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 2
cell line: Control 2
cell type: striatal neurons
genotype: Control
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696974 |
37854645 |
7646638290 |
2312.13 |
C2-L_4_S52_L001_R1_001.fastq.gz, C2-L_4_S52_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599223: Control2_T_1; Homo sapiens; RNA-Seq
Sample: SRS15225436
BioProject: PRJNA883962
BioSample: SAMN31003924
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 2
cell line: Control 2
cell type: striatal neurons
genotype: Control
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696973 |
38354804 |
7747670408 |
2322.63 |
C2-T_1_S53_L001_R1_001.fastq.gz, C2-T_1_S53_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599224: Control2_T_2; Homo sapiens; RNA-Seq
Sample: SRS15225437
BioProject: PRJNA883962
BioSample: SAMN31003923
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 2
cell line: Control 2
cell type: striatal neurons
genotype: Control
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696972 |
49176271 |
9933606742 |
2971.28 |
C2-T_2_S54_L001_R1_001.fastq.gz, C2-T_2_S54_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599225: Control2_T_3; Homo sapiens; RNA-Seq
Sample: SRS15225438
BioProject: PRJNA883962
BioSample: SAMN31003922
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 2
cell line: Control 2
cell type: striatal neurons
genotype: Control
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696971 |
22825379 |
4610726558 |
1377.25 |
C2-T_3_S55_L001_R1_001.fastq.gz, C2-T_3_S55_L001_R2_001.fastq.gz, SRR…
|
SRA
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GSM6599226: Control2_T_4; Homo sapiens; RNA-Seq
Sample: SRS15225439
BioProject: PRJNA883962
BioSample: SAMN31003921
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 2
cell line: Control 2
cell type: striatal neurons
genotype: Control
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696970 |
116606287 |
11777234987 |
3571.93 |
C2-T_4_S56_L001_R1_001.fastq.gz, C2-UT_4_S60_L001_R2_001.fastq.gz, SR…
|
SRA
|
GSM6599227: Control3_L_1; Homo sapiens; RNA-Seq
Sample: SRS15225440
BioProject: PRJNA883962
BioSample: SAMN31003920
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 3
cell line: Control 3
cell type: striatal neurons
genotype: Control
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696969 |
25025386 |
5055127972 |
1525.35 |
C3-L_1_S61_L001_R1_001.fastq.gz, C3-L_1_S61_L001_R2_001.fastq.gz, SRR…
|
SRA
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GSM6599228: Control3_L_2; Homo sapiens; RNA-Seq
Sample: SRS15225441
BioProject: PRJNA883962
BioSample: SAMN31003919
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 3
cell line: Control 3
cell type: striatal neurons
genotype: Control
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696968 |
27089675 |
5472114350 |
1659.66 |
C3-L_2_S62_L001_R1_001.fastq.gz, C3-L_2_S62_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599229: Control3_L_3; Homo sapiens; RNA-Seq
Sample: SRS15225442
BioProject: PRJNA883962
BioSample: SAMN31003918
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 3
cell line: Control 3
cell type: striatal neurons
genotype: Control
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696967 |
19399275 |
3918653550 |
1183.73 |
C3-L_3_S63_L001_R1_001.fastq.gz, C3-L_3_S63_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599230: Control3_L_4; Homo sapiens; RNA-Seq
Sample: SRS15225443
BioProject: PRJNA883962
BioSample: SAMN31003917
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 3
cell line: Control 3
cell type: striatal neurons
genotype: Control
treatment: Cas13d/NT
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696966 |
25508993 |
5152816586 |
1565.6 |
C3-L_4_S64_L001_R1_001.fastq.gz, C3-L_4_S64_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599231: Control3_T_1; Homo sapiens; RNA-Seq
Sample: SRS15225444
BioProject: PRJNA883962
BioSample: SAMN31003916
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 3
cell line: Control 3
cell type: striatal neurons
genotype: Control
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696965 |
43078168 |
8701789936 |
2611.09 |
C3-T_1_S65_L001_R1_001.fastq.gz, C3-T_1_S65_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599232: Control3_T_2; Homo sapiens; RNA-Seq
Sample: SRS15225445
BioProject: PRJNA883962
BioSample: SAMN31003915
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 3
cell line: Control 3
cell type: striatal neurons
genotype: Control
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696964 |
28658614 |
5789040028 |
1733.02 |
C3-T_2_S66_L001_R1_001.fastq.gz, C3-T_2_S66_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599233: Control3_T_3; Homo sapiens; RNA-Seq
Sample: SRS15225446
BioProject: PRJNA883962
BioSample: SAMN31003914
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 3
cell line: Control 3
cell type: striatal neurons
genotype: Control
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696963 |
55916356 |
11295103912 |
3363.22 |
C3-T_3_S67_L001_R1_001.fastq.gz, C3-T_3_S67_L001_R2_001.fastq.gz, SRR…
|
SRA
|
GSM6599234: Control3_T_4; Homo sapiens; RNA-Seq
Sample: SRS15225447
BioProject: PRJNA883962
BioSample: SAMN31003913
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Control 3
cell line: Control 3
cell type: striatal neurons
genotype: Control
treatment: Cas13d/CAGEX
time: Day 32
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR21696962 |
67856494 |
13707011788 |
4109.97 |
C3-T_4_S68_L001_R1_001.fastq.gz, C3-T_4_S68_L001_R2_001.fastq.gz, SRR…
|
SRA
|