GSE222216
GSE GEOTranscriptome changes in 22Rv1 cells with a double knockout or over expression of C145S, Empty vector, or Wild type NONO.
Organism:
Homo sapiens
Platform:
GPL20301
Samples:
45
Experiment Types:
Expression profiling by high throughput sequencing
Submitted:
Jan 05 2023
Last Updated:
Jun 20 2023
Status:
Public on Mar 21 2023
Contact:
Garrett,Lee,Lindsey (Scripps Research)
Relations
SubSeries of: GSE222217
BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA918618
Summary
RNA-Sequencing to determine transcriptome changes in 22Rv1 cells after knockdown of PSPC1 and SFPQ
Overall Design
sgControl or sgNONO 22Rv1 cells were treated in biological triplicate with sgCtrl ,sgPSPC1, or sgNONO for 72 hours prior to RNA-sequencing. 22Rv1 cells that were overexpressing NONO C145S, Empty vector, or Wild type NONO treated with DMSO (0.04%) or SKBG-1 (R) or SKBG-1 (S) (20µM for 4 hours prior to RNA-sequencing.
Analysis (4 steps)
View Data Processing
Processing steps for GSE222216
- Transcript abundance was quantified using Salmon [v1.3.0] with GENCODE v37 annotation.
- Gene level quantification was performed using tximeta [v1.8.4].
- Differential gene expression was analyzed by DESeq2 [v1.30.1]
- processed data files format and content: gene counts
Supplementary Files (2)
GEO Samples (45)
GSM6918081
GSM6918082
GSM6918083
GSM6918084
GSM6918085
GSM6918086
GSM6918087
GSM6918088
GSM6918089
GSM6918090
GSM6918091
GSM6918092
GSM6918093
GSM6918094
GSM6918095
GSM6918096
GSM6918097
GSM6918098
GSM6918099
GSM6918100
GSM6918101
GSM6918102
GSM6918103
GSM6918104
GSM6918105
GSM6918106
GSM6918107
GSM6918108
GSM6918109
GSM6918110
GSM6918111
GSM6918112
GSM6918113
GSM6918114
GSM6918115
GSM6918116
GSM6918117
GSM6918118
GSM6918119
GSM6918120
GSM6918121
GSM6918122
GSM6918123
GSM6918124
GSM6918125
Dataset Citations (1)
Remodeling oncogenic transcriptomes by small molecules targeting NONO.
PMID 36864190
· 2023
· Nature chemical biology
Stefan G Kathman, Seong Joo Koo, Garrett L Lindsey, Hsuan-Lin Her, Steven M Blue, Haoxin Li, Steffen Jaensch, Jarrett R Remsberg, Kay Ahn, Gene W Yeo, Brahma Ghosh, Benjamin F Cravatt
SRA Experiments (45) and Runs (45)
Total: 119572 MBGSM6918081: Total_RNAseq_22Rv1_sgControl_sgCtrl_72 hours_Replicate1; Homo sapiens; RNA-Seq
Sample: SRS16366765
BioProject: PRJNA918618
BioSample: SAMN32599364
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: sgControl 22Rv1 cells
timepoint: 72 hours
treatment: sgCtrl
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985968 | 33162593 | 9948777900 | 3038.71 | sgControl-sgCtrl1_R1_001.fastq.gz, sgControl-sgCtrl1_R2_001.fastq.gz,… | SRA |
GSM6918082: Total_RNAseq_22Rv1_sgControl_sgCtrl_72 hours_Replicate2; Homo sapiens; RNA-Seq
Sample: SRS16366766
BioProject: PRJNA918618
BioSample: SAMN32599363
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: sgControl 22Rv1 cells
timepoint: 72 hours
treatment: sgCtrl
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985967 | 37009094 | 11102728200 | 3402.28 | sgControl-sgCtrl2_R1_001.fastq.gz, sgControl-sgCtrl2_R2_001.fastq.gz,… | SRA |
GSM6918083: Total_RNAseq_22Rv1_sgControl_sgCtrl_72 hours_Replicate3; Homo sapiens; RNA-Seq
Sample: SRS16366767
BioProject: PRJNA918618
BioSample: SAMN32599362
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: sgControl 22Rv1 cells
timepoint: 72 hours
treatment: sgCtrl
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985966 | 35170316 | 10551094800 | 3218.83 | sgControl-sgCtrl3_R1_001.fastq.gz, sgControl-sgCtrl3_R2_001.fastq.gz,… | SRA |
GSM6918084: Total_RNAseq_22Rv1_sgControl_sgPSPC1_72 hours_Replicate1; Homo sapiens; RNA-Seq
Sample: SRS16366768
BioProject: PRJNA918618
BioSample: SAMN32599361
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: sgControl 22Rv1 cells
timepoint: 72 hours
treatment: sgPSPC1
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985965 | 34476368 | 10342910400 | 3175.3 | sgControl-sgPSPC11_R1_001.fastq.gz, sgControl-sgPSPC11_R2_001.fastq.g… | SRA |
GSM6918085: Total_RNAseq_22Rv1_sgControl_sgPSPC1_72 hours_Replicate2; Homo sapiens; RNA-Seq
Sample: SRS16366769
BioProject: PRJNA918618
BioSample: SAMN32599360
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: sgControl 22Rv1 cells
timepoint: 72 hours
treatment: sgPSPC1
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985964 | 32695586 | 9808675800 | 2983.0 | sgControl-sgPSPC12_R1_001.fastq.gz, sgControl-sgPSPC12_R2_001.fastq.g… | SRA |
GSM6918086: Total_RNAseq_22Rv1_sgControl_sgPSPC1_72 hours_Replicate3; Homo sapiens; RNA-Seq
Sample: SRS16366770
BioProject: PRJNA918618
BioSample: SAMN32599359
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: sgControl 22Rv1 cells
timepoint: 72 hours
treatment: sgPSPC1
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985963 | 30712804 | 9213841200 | 2783.37 | sgControl-sgPSPC13_R1_001.fastq.gz, sgControl-sgPSPC13_R2_001.fastq.g… | SRA |
GSM6918087: Total_RNAseq_22Rv1_sgControl_sgSFPQ_72 hours_Replicate1; Homo sapiens; RNA-Seq
Sample: SRS16366771
BioProject: PRJNA918618
BioSample: SAMN32599358
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: sgControl 22Rv1 cells
timepoint: 72 hours
treatment: sgSFPQ
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985962 | 30487002 | 9146100600 | 2787.45 | sgControl-sgSFPQ12_R1_001.fastq.gz, sgControl-sgSFPQ12_R2_001.fastq.g… | SRA |
GSM6918088: Total_RNAseq_22Rv1_sgControl_sgSFPQ_72 hours_Replicate2; Homo sapiens; RNA-Seq
Sample: SRS16366772
BioProject: PRJNA918618
BioSample: SAMN32599357
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: sgControl 22Rv1 cells
timepoint: 72 hours
treatment: sgSFPQ
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985961 | 30232585 | 9069775500 | 2751.18 | sgControl-sgSFPQ1_R1_001.fastq.gz, sgControl-sgSFPQ1_R2_001.fastq.gz,… | SRA |
GSM6918089: Total_RNAseq_22Rv1_sgControl_sgSFPQ_72 hours_Replicate3; Homo sapiens; RNA-Seq
Sample: SRS16366773
BioProject: PRJNA918618
BioSample: SAMN32599356
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: sgControl 22Rv1 cells
timepoint: 72 hours
treatment: sgSFPQ
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985960 | 33072627 | 9921788100 | 2993.3 | sgControl-sgSFPQ3_R1_001.fastq.gz, sgControl-sgSFPQ3_R2_001.fastq.gz,… | SRA |
GSM6918090: Total_RNAseq_22Rv1_sgNONO_sgCtrl_72 hours_Replicate1; Homo sapiens; RNA-Seq
Sample: SRS16366774
BioProject: PRJNA918618
BioSample: SAMN32599355
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: sgNONO 22Rv1 cells
timepoint: 72 hours
treatment: sgCtrl
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985959 | 36764934 | 11029480200 | 3359.11 | sgNONO-sgCtrl1_R1_001.fastq.gz, sgNONO-sgCtrl1_R2_001.fastq.gz, SRR22… | SRA |
GSM6918091: Total_RNAseq_22Rv1_sgNONO_sgCtrl_72 hours_Replicate2; Homo sapiens; RNA-Seq
Sample: SRS16366775
BioProject: PRJNA918618
BioSample: SAMN32599354
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: sgNONO 22Rv1 cells
timepoint: 72 hours
treatment: sgCtrl
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985958 | 33809309 | 10142792700 | 3093.95 | sgNONO-sgCtrl2_R1_001.fastq.gz, sgNONO-sgCtrl2_R2_001.fastq.gz, SRR22… | SRA |
GSM6918092: Total_RNAseq_22Rv1_sgNONO_sgCtrl_72 hours_Replicate3; Homo sapiens; RNA-Seq
Sample: SRS16366776
BioProject: PRJNA918618
BioSample: SAMN32599353
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: sgNONO 22Rv1 cells
timepoint: 72 hours
treatment: sgCtrl
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985957 | 32193809 | 9658142700 | 2932.06 | sgNONO-sgCtrl3_R1_001.fastq.gz, sgNONO-sgCtrl3_R2_001.fastq.gz, SRR22… | SRA |
GSM6918093: Total_RNAseq_22Rv1_sgNONO_sgPSPC1_72 hours_Replicate1; Homo sapiens; RNA-Seq
Sample: SRS16366777
BioProject: PRJNA918618
BioSample: SAMN32599352
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: sgNONO 22Rv1 cells
timepoint: 72 hours
treatment: sgPSPC1
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985956 | 33908224 | 10172467200 | 3091.93 | sgNONO-sgPSPC11_R1_001.fastq.gz, sgNONO-sgPSPC11_R2_001.fastq.gz, SRR… | SRA |
GSM6918094: Total_RNAseq_22Rv1_sgNONO_sgPSPC1_72 hours_Replicate2; Homo sapiens; RNA-Seq
Sample: SRS16366778
BioProject: PRJNA918618
BioSample: SAMN32599351
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: sgNONO 22Rv1 cells
timepoint: 72 hours
treatment: sgPSPC1
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985955 | 32848888 | 9854666400 | 2994.26 | sgNONO-sgPSPC12_R1_001.fastq.gz, sgNONO-sgPSPC12_R2_001.fastq.gz, SRR… | SRA |
GSM6918095: Total_RNAseq_22Rv1_sgNONO_sgPSPC1_72 hours_Replicate3; Homo sapiens; RNA-Seq
Sample: SRS16366779
BioProject: PRJNA918618
BioSample: SAMN32599350
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: sgNONO 22Rv1 cells
timepoint: 72 hours
treatment: sgPSPC1
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985954 | 31447432 | 9434229600 | 2877.83 | sgNONO-sgPSPC13_R1_001.fastq.gz, sgNONO-sgPSPC13_R2_001.fastq.gz, SRR… | SRA |
GSM6918096: Total_RNAseq_22Rv1_sgNONO_sgSFPQ_72 hours_Replicate1; Homo sapiens; RNA-Seq
Sample: SRS16366780
BioProject: PRJNA918618
BioSample: SAMN32599349
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: sgNONO 22Rv1 cells
timepoint: 72 hours
treatment: sgSFPQ
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985953 | 34966400 | 10489920000 | 3210.35 | sgNONO-sgSFPQ1_R1_001.fastq.gz, sgNONO-sgSFPQ1_R2_001.fastq.gz, SRR22… | SRA |
GSM6918097: Total_RNAseq_22Rv1_sgNONO_sgSFPQ_72 hours_Replicate2; Homo sapiens; RNA-Seq
Sample: SRS16366781
BioProject: PRJNA918618
BioSample: SAMN32599348
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: sgNONO 22Rv1 cells
timepoint: 72 hours
treatment: sgSFPQ
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985952 | 30625096 | 9187528800 | 2785.85 | sgNONO-sgSFPQ2_R1_001.fastq.gz, sgNONO-sgSFPQ2_R2_001.fastq.gz, SRR22… | SRA |
GSM6918098: Total_RNAseq_22Rv1_sgNONO_sgSFPQ_72 hours_Replicate3; Homo sapiens; RNA-Seq
Sample: SRS16366782
BioProject: PRJNA918618
BioSample: SAMN32599347
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: sgNONO 22Rv1 cells
timepoint: 72 hours
treatment: sgSFPQ
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985951 | 33693616 | 10108084800 | 3093.09 | sgNONO-sgSFPQ3_R1_001.fastq.gz, sgNONO-sgSFPQ3_R2_001.fastq.gz, SRR22… | SRA |
GSM6918099: Total_RNAseq_22Rv1_C145S_10R_4hours_Replicate1; Homo sapiens; RNA-Seq
Sample: SRS16366783
BioProject: PRJNA918618
BioSample: SAMN32599346
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing NONO C145S
timepoint: 4 hours
treatment: SKBG-1 (R), 20µM
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985950 | 29374113 | 8812233900 | 2649.18 | C145S10R-1_R1_001.fastq.gz, C145S10R-1_R2_001.fastq.gz, SRR22985950, … | SRA |
GSM6918100: Total_RNAseq_22Rv1_C145S_10R_4hours_Replicate2; Homo sapiens; RNA-Seq
Sample: SRS16366784
BioProject: PRJNA918618
BioSample: SAMN32599345
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing NONO C145S
timepoint: 4 hours
treatment: SKBG-1 (R), 20µM
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985949 | 25061534 | 7518460200 | 2323.88 | C145S10R-2_R1_001.fastq.gz, C145S10R-2_R2_001.fastq.gz, SRR22985949, … | SRA |
GSM6918101: Total_RNAseq_22Rv1_C145S_10R_4hours_Replicate3; Homo sapiens; RNA-Seq
Sample: SRS16366785
BioProject: PRJNA918618
BioSample: SAMN32599344
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing NONO C145S
timepoint: 4 hours
treatment: SKBG-1 (R), 20µM
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985948 | 29458758 | 8837627400 | 2733.9 | C145S10R-3_R1_001.fastq.gz, C145S10R-3_R2_001.fastq.gz, SRR22985948, … | SRA |
GSM6918102: Total_RNAseq_22Rv1_C145S_10S_4hours_Replicate1; Homo sapiens; RNA-Seq
Sample: SRS16366786
BioProject: PRJNA918618
BioSample: SAMN32599343
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing NONO C145S
timepoint: 4 hours
treatment: SKBG-1 (S), 20µM
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985947 | 29506225 | 8851867500 | 2716.32 | C145S10S-1_R1_001.fastq.gz, C145S10S-1_R2_001.fastq.gz, SRR22985947, … | SRA |
GSM6918103: Total_RNAseq_22Rv1_C145S_10S_4hours_Replicate2; Homo sapiens; RNA-Seq
Sample: SRS16366787
BioProject: PRJNA918618
BioSample: SAMN32599342
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing NONO C145S
timepoint: 4 hours
treatment: SKBG-1 (S), 20µM
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985946 | 26241345 | 7872403500 | 2418.1 | C145S10S-2_R1_001.fastq.gz, C145S10S-2_R2_001.fastq.gz, SRR22985946, … | SRA |
GSM6918104: Total_RNAseq_22Rv1_C145S_10S_4hours_Replicate3; Homo sapiens; RNA-Seq
Sample: SRS16366788
BioProject: PRJNA918618
BioSample: SAMN32599341
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing NONO C145S
timepoint: 4 hours
treatment: SKBG-1 (S), 20µM
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985945 | 29997926 | 8999377800 | 2749.17 | C145S10S-3_R1_001.fastq.gz, C145S10S-3_R2_001.fastq.gz, SRR22985945, … | SRA |
GSM6918105: Total_RNAseq_22Rv1_C145S_DMSO_4hours_Replicate1; Homo sapiens; RNA-Seq
Sample: SRS16366789
BioProject: PRJNA918618
BioSample: SAMN32599340
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing NONO C145S
timepoint: 4 hours
treatment: DMSO
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985944 | 31029728 | 9308918400 | 2826.59 | C145SD-1_R1_001.fastq.gz, C145SD-1_R2_001.fastq.gz, SRR22985944, SRR2… | SRA |
GSM6918106: Total_RNAseq_22Rv1_C145S_DMSO_4hours_Replicate2; Homo sapiens; RNA-Seq
Sample: SRS16366790
BioProject: PRJNA918618
BioSample: SAMN32599339
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing NONO C145S
timepoint: 4 hours
treatment: DMSO
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985943 | 24217470 | 7265241000 | 2219.42 | C145SD-2_R1_001.fastq.gz, C145SD-2_R2_001.fastq.gz, SRR22985943, SRR2… | SRA |
GSM6918107: Total_RNAseq_22Rv1_C145S_DMSO_4hours_Replicate3; Homo sapiens; RNA-Seq
Sample: SRS16366791
BioProject: PRJNA918618
BioSample: SAMN32599338
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing NONO C145S
timepoint: 4 hours
treatment: DMSO
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985942 | 26132965 | 7839889500 | 2388.72 | C145SD-3_R1_001.fastq.gz, C145SD-3_R2_001.fastq.gz, SRR22985942, SRR2… | SRA |
GSM6918108: Total_RNAseq_22Rv1_EmptyVector_10R_4hours_Replicate1; Homo sapiens; RNA-Seq
Sample: SRS16366792
BioProject: PRJNA918618
BioSample: SAMN32599337
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing Empty Vector
timepoint: 4 hours
treatment: SKBG-1 (R), 20µM
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985941 | 20745888 | 6223766400 | 1908.95 | EV10R-1_R1_001.fastq.gz, EV10R-1_R2_001.fastq.gz, SRR22985941, SRR229… | SRA |
GSM6918109: Total_RNAseq_22Rv1_EmptyVector_10R_4hours_Replicate2; Homo sapiens; RNA-Seq
Sample: SRS16366793
BioProject: PRJNA918618
BioSample: SAMN32599336
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing Empty Vector
timepoint: 4 hours
treatment: SKBG-1 (R), 20µM
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985940 | 20624125 | 6187237500 | 1890.46 | EV10R-2_R1_001.fastq.gz, EV10R-2_R2_001.fastq.gz, SRR22985940, SRR229… | SRA |
GSM6918110: Total_RNAseq_22Rv1_EmptyVector_10R_4hours_Replicate3; Homo sapiens; RNA-Seq
Sample: SRS16366794
BioProject: PRJNA918618
BioSample: SAMN32599335
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing Empty Vector
timepoint: 4 hours
treatment: SKBG-1 (R), 20µM
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985939 | 25437437 | 7631231100 | 2307.67 | EV10R-3_R1_001.fastq.gz, EV10R-3_R2_001.fastq.gz, SRR22985939, SRR229… | SRA |
GSM6918111: Total_RNAseq_22Rv1_EmptyVector_10S_4hours_Replicate1; Homo sapiens; RNA-Seq
Sample: SRS16366795
BioProject: PRJNA918618
BioSample: SAMN32599334
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing Empty Vector
timepoint: 4 hours
treatment: SKBG-1 (S), 20µM
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985938 | 24983311 | 7494993300 | 2330.72 | EV10S-1_R1_001.fastq.gz, EV10S-1_R2_001.fastq.gz, SRR22985938, SRR229… | SRA |
GSM6918112: Total_RNAseq_22Rv1_EmptyVector_10S_4hours_Replicate2; Homo sapiens; RNA-Seq
Sample: SRS16366796
BioProject: PRJNA918618
BioSample: SAMN32599333
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing Empty Vector
timepoint: 4 hours
treatment: SKBG-1 (S), 20µM
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985937 | 26809848 | 8042954400 | 2485.41 | EV10S-2_R1_001.fastq.gz, EV10S-2_R2_001.fastq.gz, SRR22985937, SRR229… | SRA |
GSM6918113: Total_RNAseq_22Rv1_EmptyVector_10S_4hours_Replicate3; Homo sapiens; RNA-Seq
Sample: SRS16366797
BioProject: PRJNA918618
BioSample: SAMN32599332
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing Empty Vector
timepoint: 4 hours
treatment: SKBG-1 (S), 20µM
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985936 | 26690515 | 8007154500 | 2489.4 | EV10S-3_R1_001.fastq.gz, EV10S-3_R2_001.fastq.gz, SRR22985936, SRR229… | SRA |
GSM6918114: Total_RNAseq_22Rv1_EmptyVector_DMSO_4hours_Replicate1; Homo sapiens; RNA-Seq
Sample: SRS16366798
BioProject: PRJNA918618
BioSample: SAMN32599331
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing Empty Vector
timepoint: 4 hours
treatment: DMSO
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985935 | 22842254 | 6852676200 | 2094.73 | EVD-1_R1_001.fastq.gz, EVD-1_R2_001.fastq.gz, SRR22985935, SRR2298593… | SRA |
GSM6918115: Total_RNAseq_22Rv1_EmptyVector_DMSO_4hours_Replicate2; Homo sapiens; RNA-Seq
Sample: SRS16366799
BioProject: PRJNA918618
BioSample: SAMN32599330
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing Empty Vector
timepoint: 4 hours
treatment: DMSO
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985934 | 22224627 | 6667388100 | 2027.09 | EVD-2_R1_001.fastq.gz, EVD-2_R2_001.fastq.gz, SRR22985934, SRR2298593… | SRA |
GSM6918116: Total_RNAseq_22Rv1_EmptyVector_DMSO_4hours_Replicate3; Homo sapiens; RNA-Seq
Sample: SRS16366800
BioProject: PRJNA918618
BioSample: SAMN32599329
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing Empty Vector
timepoint: 4 hours
treatment: DMSO
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985933 | 24604635 | 7381390500 | 2254.9 | EVD-3_R1_001.fastq.gz, EVD-3_R2_001.fastq.gz, SRR22985933, SRR2298593… | SRA |
GSM6918117: Total_RNAseq_22Rv1_WildType_10R_4hours_Replicate1; Homo sapiens; RNA-Seq
Sample: SRS16366801
BioProject: PRJNA918618
BioSample: SAMN32599328
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing Wild type NONO
timepoint: 4 hours
treatment: SKBG-1 (R), 20µM
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985932 | 24487995 | 7346398500 | 2271.86 | WT10R-1_R1_001.fastq.gz, WT10R-1_R2_001.fastq.gz, SRR22985932, SRR229… | SRA |
GSM6918118: Total_RNAseq_22Rv1_WildType_10R_4hours_Replicate2; Homo sapiens; RNA-Seq
Sample: SRS16366802
BioProject: PRJNA918618
BioSample: SAMN32599327
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing Wild type NONO
timepoint: 4 hours
treatment: SKBG-1 (R), 20µM
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985931 | 28288106 | 8486431800 | 2632.51 | WT10R-2_R1_001.fastq.gz, WT10R-2_R2_001.fastq.gz, SRR22985931, SRR229… | SRA |
GSM6918119: Total_RNAseq_22Rv1_WildType_10R_4hours_Replicate3; Homo sapiens; RNA-Seq
Sample: SRS16366803
BioProject: PRJNA918618
BioSample: SAMN32599326
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing Wild type NONO
timepoint: 4 hours
treatment: SKBG-1 (R), 20µM
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985930 | 26969863 | 8090958900 | 2472.63 | WT10R-3_R1_001.fastq.gz, WT10R-3_R2_001.fastq.gz, SRR22985930, SRR229… | SRA |
GSM6918120: Total_RNAseq_22Rv1_WildType_10S_4hours_Replicate1; Homo sapiens; RNA-Seq
Sample: SRS16366804
BioProject: PRJNA918618
BioSample: SAMN32599325
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing Wild type NONO
timepoint: 4 hours
treatment: SKBG-1 (S), 20µM
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985929 | 26957182 | 8087154600 | 2438.83 | WT10S-1_R1_001.fastq.gz, WT10S-1_R2_001.fastq.gz, SRR22985929, SRR229… | SRA |
GSM6918121: Total_RNAseq_22Rv1_WildType_10S_4hours_Replicate2; Homo sapiens; RNA-Seq
Sample: SRS16366805
BioProject: PRJNA918618
BioSample: SAMN32599324
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing Wild type NONO
timepoint: 4 hours
treatment: SKBG-1 (S), 20µM
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985928 | 27199273 | 8159781900 | 2487.41 | WT10S-2_R1_001.fastq.gz, WT10S-2_R2_001.fastq.gz, SRR22985928, SRR229… | SRA |
GSM6918122: Total_RNAseq_22Rv1_WildType_10S_4hours_Replicate3; Homo sapiens; RNA-Seq
Sample: SRS16366806
BioProject: PRJNA918618
BioSample: SAMN32599323
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing Wild type NONO
timepoint: 4 hours
treatment: SKBG-1 (S), 20µM
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985927 | 26550592 | 7965177600 | 2424.22 | WT10S-3_R1_001.fastq.gz, WT10S-3_R2_001.fastq.gz, SRR22985927, SRR229… | SRA |
GSM6918123: Total_RNAseq_22Rv1_WildType_DMSO_4hours_Replicate1; Homo sapiens; RNA-Seq
Sample: SRS16366807
BioProject: PRJNA918618
BioSample: SAMN32599322
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing Wild type NONO
timepoint: 4 hours
treatment: DMSO
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985926 | 28284844 | 8485453200 | 2629.28 | WTD-1_R1_001.fastq.gz, WTD-1_R2_001.fastq.gz, SRR22985926, SRR2298592… | SRA |
GSM6918124: Total_RNAseq_22Rv1_WildType_DMSO_4hours_Replicate2; Homo sapiens; RNA-Seq
Sample: SRS16366808
BioProject: PRJNA918618
BioSample: SAMN32599321
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing Wild type NONO
timepoint: 4 hours
treatment: DMSO
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985925 | 28749120 | 8624736000 | 2638.72 | WTD-2_R1_001.fastq.gz, WTD-2_R2_001.fastq.gz, SRR22985925, SRR2298592… | SRA |
GSM6918125: Total_RNAseq_22Rv1_WildType_DMSO_4hours_Replicate3; Homo sapiens; RNA-Seq
Sample: SRS16366809
BioProject: PRJNA918618
BioSample: SAMN32599320
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: Prostate carcinoma
tissue: Prostate carcinoma
cell type: 22Rv1 cells overexpressing Wild type NONO
timepoint: 4 hours
treatment: DMSO
Original files (1)
Prostate carcinoma
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR22985924 | 23496653 | 7048995900 | 2190.53 | WTD-3_R1_001.fastq.gz, WTD-3_R2_001.fastq.gz, SRR22985924, SRR2298592… | SRA |
Linked Publications (1)
Remodeling oncogenic transcriptomes by small molecules targeting NONO.
Nature chemical biology · 2023
Data Files (45)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| — | C145S10R-1_R1_001.fastq.gz | RNA-Seq | 2.6 GB | link | |||
| — | C145S10R-2_R1_001.fastq.gz | RNA-Seq | 2.3 GB | link | |||
| — | C145S10R-3_R1_001.fastq.gz | RNA-Seq | 2.7 GB | link | |||
| — | C145S10S-1_R1_001.fastq.gz | RNA-Seq | 2.7 GB | link | |||
| — | C145S10S-2_R1_001.fastq.gz | RNA-Seq | 2.4 GB | link | |||
| — | C145S10S-3_R1_001.fastq.gz | RNA-Seq | 2.7 GB | link | |||
| — | C145SD-1_R1_001.fastq.gz | RNA-Seq | 2.8 GB | link | |||
| — | C145SD-2_R1_001.fastq.gz | RNA-Seq | 2.2 GB | link | |||
| — | C145SD-3_R1_001.fastq.gz | RNA-Seq | 2.3 GB | link | |||
| — | EV10R-1_R1_001.fastq.gz | RNA-Seq | 1.9 GB | link | |||
| — | EV10R-2_R1_001.fastq.gz | RNA-Seq | 1.8 GB | link | |||
| — | EV10R-3_R1_001.fastq.gz | RNA-Seq | 2.3 GB | link | |||
| — | EV10S-1_R1_001.fastq.gz | RNA-Seq | 2.3 GB | link | |||
| — | EV10S-2_R1_001.fastq.gz | RNA-Seq | 2.4 GB | link | |||
| — | EV10S-3_R1_001.fastq.gz | RNA-Seq | 2.4 GB | link | |||
| — | EVD-1_R1_001.fastq.gz | RNA-Seq | 2.0 GB | link | |||
| — | EVD-2_R1_001.fastq.gz | RNA-Seq | 2.0 GB | link | |||
| — | EVD-3_R1_001.fastq.gz | RNA-Seq | 2.2 GB | link | |||
| — | sgControl-sgCtrl1_R1_001.fastq.gz | RNA-Seq | 3.0 GB | link | |||
| — | sgControl-sgCtrl2_R1_001.fastq.gz | RNA-Seq | 3.3 GB | link | |||
| — | sgControl-sgCtrl3_R1_001.fastq.gz | RNA-Seq | 3.1 GB | link | |||
| — | sgControl-sgPSPC11_R1_001.fastq.gz | RNA-Seq | 3.1 GB | link | |||
| — | sgControl-sgPSPC12_R1_001.fastq.gz | RNA-Seq | 2.9 GB | link | |||
| — | sgControl-sgPSPC13_R1_001.fastq.gz | RNA-Seq | 2.7 GB | link | |||
| — | sgControl-sgSFPQ12_R1_001.fastq.gz | RNA-Seq | 2.7 GB | link | |||
| — | sgControl-sgSFPQ1_R1_001.fastq.gz | RNA-Seq | 2.7 GB | link | |||
| — | sgControl-sgSFPQ3_R1_001.fastq.gz | RNA-Seq | 2.9 GB | link | |||
| — | sgNONO-sgCtrl1_R1_001.fastq.gz | RNA-Seq | 3.3 GB | link | |||
| — | sgNONO-sgCtrl2_R1_001.fastq.gz | RNA-Seq | 3.0 GB | link | |||
| — | sgNONO-sgCtrl3_R1_001.fastq.gz | RNA-Seq | 2.9 GB | link | |||
| — | sgNONO-sgPSPC11_R1_001.fastq.gz | RNA-Seq | 3.0 GB | link | |||
| — | sgNONO-sgPSPC12_R1_001.fastq.gz | RNA-Seq | 2.9 GB | link | |||
| — | sgNONO-sgPSPC13_R1_001.fastq.gz | RNA-Seq | 2.8 GB | link | |||
| — | sgNONO-sgSFPQ1_R1_001.fastq.gz | RNA-Seq | 3.1 GB | link | |||
| — | sgNONO-sgSFPQ2_R1_001.fastq.gz | RNA-Seq | 2.7 GB | link | |||
| — | sgNONO-sgSFPQ3_R1_001.fastq.gz | RNA-Seq | 3.0 GB | link | |||
| — | WT10R-1_R1_001.fastq.gz | RNA-Seq | 2.2 GB | link | |||
| — | WT10R-2_R1_001.fastq.gz | RNA-Seq | 2.6 GB | link | |||
| — | WT10R-3_R1_001.fastq.gz | RNA-Seq | 2.4 GB | link | |||
| — | WT10S-1_R1_001.fastq.gz | RNA-Seq | 2.4 GB | link | |||
| — | WT10S-2_R1_001.fastq.gz | RNA-Seq | 2.4 GB | link | |||
| — | WT10S-3_R1_001.fastq.gz | RNA-Seq | 2.4 GB | link | |||
| — | WTD-1_R1_001.fastq.gz | RNA-Seq | 2.6 GB | link | |||
| — | WTD-2_R1_001.fastq.gz | RNA-Seq | 2.6 GB | link | |||
| — | WTD-3_R1_001.fastq.gz | RNA-Seq | 2.1 GB | link |