GSE77629
GSE GEOEnhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites [eCLIP - 293T cells]
Organism:
Homo sapiens
Platform:
GPL16791
Samples:
24
Experiment Types:
Other
Submitted:
Feb 05 2016
Last Updated:
May 15 2019
Status:
Public on Mar 28 2016
Contact:
Gene,,Yeo (UCSD)
Relations
SubSeries of: GSE77634
BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA311053
SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP069351
Summary
RNA binding proteins (RBPs) play essential roles in cellular physiology by interacting with target RNAs. As defects in protein-RNA recognition lead to human disease, UV-crosslinking and immunoprecipitation (CLIP) of ribonuclear complexes followed by deep sequencing (-seq) is critical in constructing protein-RNA maps to expand our understanding of RBP function. However, current CLIP protocols are technically demanding and involve low complexity libraries that yield squandered sequencing of PCR duplicates and high experimental failure rates. To enable truly large-scale implementation of CLIP-seq, we have developed an enhanced CLIP methodology (eCLIP) that features a decrease of ~10 cycles of requisite amplification with a concomitant >60% decrease in discarded PCR duplicate reads, while maintaining the ability to identify RNA binding with single-nucleotide resolution. By simplifying the generation of paired IgG and size-matched input controls, eCLIP also dramatically improves specificity in discovery of authentic binding sites. To demonstrate that eCLIP enables large-scale and robust profiling of RBPs, 102 eCLIP experiments in biological duplicate for a diverse collection of 74 RBPs in HepG2 and K562 cells were completed (available at https://www.encodeproject.org). We establish that eCLIP is comparable in amplification and sample requirements to ChIP-seq, and enables integrative analysis of diverse RBPs to reveal factor-specific profiles, common artifacts for CLIP experiments and RNA-centric perspectives of RBP activity.
Overall Design
eCLIP-seq against RBFOX2 and SLBP in 293T Cells
Analysis (32 steps)
View Data Processing
Processing steps for GSE77629
- Takes output from raw files.
- Run to trim off both 5â and 3â adapters on both reads.
- Command: quality-cutoff 6 -m 18 -a NNNNNAGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -g CTTCCGATCTACAAGTT -g CTTCCGATCTTGGTCCT -A AACTTGTAGATCGGA -A AGGACCAAGATCGGA -A ACTTGTAGATCGGAA -A GGACCAAGATCGGAA -A CTTGT AGATCGGAAG -A GACCAAGATCGGAAG -A TTGTAGATCGGAAGA -A ACCAAGATCGGAAGA -A TGTAGATCGGAAGAG -A CCAAGATCGGAAGAG -A GTAGATCGGAAGAGC -A CAAGATCGGAAGAGC -A TAGATCGGAAGAGCG -A AAGATCGGAAGAGCG -A AGATCGGAAGAGCGT -A GATCGGAAGAGCGTC -A ATCGGAAGAGCGTCG -A TCGGAAGAGCGTCGT -A CGGAAGAGCGTCGTG -A GGAAGAGCGTCGTGT -o /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.fastq.gz -p /full/path/to/files/file_R2.C01.fastq.gz.adapterTrim.fastq.gz /full/path/to/files/file_R1.C01.fastq.gz /full/path/to/files/file_R2.C01.fastq.gz > /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.metrics
- Takes output from cutadapt round 1.
- Run to trim off the 3â adapters on read 2, to control for double ligation events.
- Command: cutadapt -f fastq --match-read-wildcards --times 1 -e 0.1 -O 5 --quality-cutoff 6 -m 18 -A AACTTGTAGATCGGA -A AGGACCAAGATCGGA -A ACTTGTAGATCGGAA -A GGACCAAGATCGGAA -A CTTGTAGATCGGAAG -A GACCAAGATCGGAAG -A TTGTAGATCGGAAGA -A ACCAAGATCGGAAGA -A TGTAGATCGGAAGAG -A CCAAGATCGGAAGAG -A GTAGATCGGAAGAGC -A CAAGATCGGAAGAGC -A TAGATCGGAAGAGCG -A AAGATCGGAAGAGCG -A AGATCGGAAGAGCGT -A GATCGGAAGAGCGTC -A ATCGGAAGAGCGTCG -A TCGGAAGAGCGTCGT -A CGGAAGAGCGTCGTG -A GGAAGAGCGTCGTGT -o /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.round2.fastq.gz -p /full/path/to/files/file_R2.C01.fastq.gz.adapterTrim.round2.fastq.gz /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.fastq.gz /full/path/to/files/file_R2.C01.fastq.gz.adapterTrim.fastq.gz > /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.round2.metrics
- Takes output from cutadapt round 2.
- Maps to human specific version of RepBase used to remove repetitive elements, helps control for spurious artifacts from rRNA (& other) repetitive reads.
Showing first 8 steps.
Supplementary Files (1)
GSE77629_RAW.tar
Download
Dataset Citations (1)
Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP).
PMID 27018577
· 2016
· Nature methods
Eric L Van Nostrand, Gabriel A Pratt, Alexander A Shishkin, Chelsea Gelboin-Burkhart, Mark Y Fang, Balaji Sundararaman, Steven M Blue, Thai B Nguyen, Christine Surka, Keri Elkins, Rebecca Stanton, Frank Rigo, Mitchell Guttman, Gene W Yeo
SRA Experiments (24) and Runs (41)
Total: 14297 MBGSM2055432: RBFOX2 293T Rep1; Homo sapiens; OTHER
Sample: SRS1277718
BioProject: PRJNA311053
BioSample: SAMN04461214
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: RBFOX2 293T
cell line: 293T
rip antibody: RBFOX2
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
RBFOX2 293T
GSM2055433: RBFOX2 293T Rep1 Input; Homo sapiens; OTHER
Sample: SRS1277717
BioProject: PRJNA311053
BioSample: SAMN04461215
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: RBFOX2 293T Input
cell line: 293T
rip antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
RBFOX2 293T Input
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR3147600 | 32054523 | 3365724915 | 1098.43 | 293XT_Input_1120_GAATTCGT-GGCTCTGA_R1.unassigned.randomer.fastq.gz, 2… | SRA |
GSM2055434: RBFOX2 293T Rep2; Homo sapiens; OTHER
Sample: SRS1277714
BioProject: PRJNA311053
BioSample: SAMN04461216
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: RBFOX2 293T
cell line: 293T
rip antibody: RBFOX2
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
RBFOX2 293T
GSM2055435: RBFOX2 293T Rep2 Input; Homo sapiens; OTHER
Sample: SRS1277716
BioProject: PRJNA311053
BioSample: SAMN04461145
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: RBFOX2 293T Input
cell line: 293T
rip antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
RBFOX2 293T Input
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR3147603 | 30095905 | 3160070025 | 1013.87 | 293XT_Input_0204_ATTCAGAA-TAATCTTA_R1.unassigned.randomer.fastq.gz, 2… | SRA |
GSM2055436: IgG 293T Rep1; Homo sapiens; OTHER
Sample: SRS1277715
BioProject: PRJNA311053
BioSample: SAMN04461146
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: IgG 293T
cell line: 293T
rip antibody: IgG isotype control
antibody manufacturer: Thermo Fisher
rnase i fragmentation condition: 40 U
Original files (1)
IgG 293T
GSM2055437: IgG 293T Rep1 Input; Homo sapiens; OTHER
Sample: SRS1277761
BioProject: PRJNA311053
BioSample: SAMN04461147
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: IgG 293T Input
cell line: 293T
rip antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
IgG 293T Input
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR3147606 | 32759737 | 3439772385 | 1123.75 | 293XT_Input_IgG1120_GAGATTCC-GGCTCTGA_R1.unassigned.randomer.fastq.gz… | SRA |
GSM2055438: SLBP 293T Rep1; Homo sapiens; OTHER
Sample: SRS1277760
BioProject: PRJNA311053
BioSample: SAMN04461148
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: SLBP 293T
cell line: 293T
rip antibody: SLBP
antibody manufacturer: MBL
rnase i fragmentation condition: 40 U
Original files (1)
SLBP 293T
GSM2055439: SLBP 293T Rep1 Input; Homo sapiens; OTHER
Sample: SRS1277759
BioProject: PRJNA311053
BioSample: SAMN04461149
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: SLBP 293T Input
cell line: 293T
rip antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
SLBP 293T Input
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR3147609 | 15956998 | 1675484790 | 585.38 | EVN_INPUT_12_ATTACTCG-ATAGAGGC_L007_R1.unassigned.randomer.fastq.gz, … | SRA |
GSM2055440: SLBP 293T Rep2; Homo sapiens; OTHER
Sample: SRS1277758
BioProject: PRJNA311053
BioSample: SAMN04461150
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: SLBP 293T
cell line: 293T
rip antibody: SLBP
antibody manufacturer: MBL
rnase i fragmentation condition: 40 U
Original files (1)
SLBP 293T
GSM2055441: SLBP 293T Rep2 Input; Homo sapiens; OTHER
Sample: SRS1277756
BioProject: PRJNA311053
BioSample: SAMN04461167
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: SLBP 293T Input
cell line: 293T
rip antibody: none (input)
rnase i fragmentation condition: 40 U
Original files (1)
SLBP 293T Input
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR3147612 | 12184394 | 1279361370 | 452.96 | EVN_INPUT_13_TCCGGAGA-ATAGAGGC_L007_R1.unassigned.randomer.fastq.gz, … | SRA |
GSM2055442: SLBP 293T Rep3; Homo sapiens; OTHER
Sample: SRS1277757
BioProject: PRJNA311053
BioSample: SAMN04461168
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: SLBP 293T
cell line: 293T
rip antibody: SLBP
antibody manufacturer: MBL
rnase i fragmentation condition: 5 U
Original files (1)
SLBP 293T
GSM2055443: SLBP 293T Rep3 Input; Homo sapiens; OTHER
Sample: SRS1277755
BioProject: PRJNA311053
BioSample: SAMN04461169
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: SLBP 293T Input
cell line: 293T
rip antibody: none (input)
rnase i fragmentation condition: 5 U
Original files (1)
SLBP 293T Input
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR3147615 | 14941475 | 1568854875 | 541.48 | EVN_INPUT_14_CGCTCATT-TATAGCCT_L007_R1.unassigned.randomer.fastq.gz, … | SRA |
GSM2055444: SLBP 293T Rep4; Homo sapiens; OTHER
Sample: SRS1277754
BioProject: PRJNA311053
BioSample: SAMN04461170
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: SLBP 293T
cell line: 293T
rip antibody: SLBP
antibody manufacturer: MBL
rnase i fragmentation condition: 5 U
Original files (1)
SLBP 293T
GSM2055445: SLBP 293T Rep4 Input; Homo sapiens; OTHER
Sample: SRS1277753
BioProject: PRJNA311053
BioSample: SAMN04461171
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: SLBP 293T Input
cell line: 293T
rip antibody: none (input)
rnase i fragmentation condition: 5 U
Original files (1)
SLBP 293T Input
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR3147618 | 13340469 | 1400749245 | 479.04 | EVN_INPUT_15_GAGATTCC-TATAGCCT_L007_R1.unassigned.randomer.fastq.gz, … | SRA |
GSM2055446: RBFOX2 Shearing 293T Condition0U; Homo sapiens; OTHER
Sample: SRS1277752
BioProject: PRJNA311053
BioSample: SAMN04461172
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: RBFOX2 Shearing 293T Condition0U
cell line: 293T
rip antibody: RBFOX2
antibody manufacturer: Bethyl
rnase i fragmentation condition: 0 U
Original files (1)
RBFOX2 Shearing 293T Condition0U
GSM2055447: RBFOX2 Shearing 293T Condition5U Rep1; Homo sapiens; OTHER
Sample: SRS1277751
BioProject: PRJNA311053
BioSample: SAMN04461173
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: RBFOX2 Shearing 293T Condition5U
cell line: 293T
rip antibody: RBFOX2
antibody manufacturer: Bethyl
rnase i fragmentation condition: 5 U
Original files (1)
RBFOX2 Shearing 293T Condition5U
GSM2055448: RBFOX2 Shearing 293T Condition40U Rep1; Homo sapiens; OTHER
Sample: SRS1277750
BioProject: PRJNA311053
BioSample: SAMN04461174
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: RBFOX2 Shearing 293T Condition40U
cell line: 293T
rip antibody: RBFOX2
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
RBFOX2 Shearing 293T Condition40U
GSM2055449: RBFOX2 Shearing 293T Condition400U; Homo sapiens; OTHER
Sample: SRS1277749
BioProject: PRJNA311053
BioSample: SAMN04461175
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: RBFOX2 Shearing 293T Condition400U
cell line: 293T
rip antibody: RBFOX2
antibody manufacturer: Bethyl
rnase i fragmentation condition: 400 U
Original files (1)
RBFOX2 Shearing 293T Condition400U
GSM2055450: RBFOX2 Shearing 293T Condition2000U; Homo sapiens; OTHER
Sample: SRS1277724
BioProject: PRJNA311053
BioSample: SAMN04461176
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: RBFOX2 Shearing 293T Condition2000U
cell line: 293T
rip antibody: RBFOX2
antibody manufacturer: Bethyl
rnase i fragmentation condition: 2000 U
Original files (1)
RBFOX2 Shearing 293T Condition2000U
GSM2055451: RBFOX2 Shearing 293T Condition5U Rep2; Homo sapiens; OTHER
Sample: SRS1277723
BioProject: PRJNA311053
BioSample: SAMN04461177
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: RBFOX2 Shearing 293T Condition5U
cell line: 293T
rip antibody: RBFOX2
antibody manufacturer: Bethyl
rnase i fragmentation condition: 5 U
Original files (1)
RBFOX2 Shearing 293T Condition5U
GSM2055452: RBFOX2 Shearing 293T Condition10U; Homo sapiens; OTHER
Sample: SRS1277722
BioProject: PRJNA311053
BioSample: SAMN04461178
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: RBFOX2 Shearing 293T Condition10U
cell line: 293T
rip antibody: RBFOX2
antibody manufacturer: Bethyl
rnase i fragmentation condition: 10 U
Original files (1)
RBFOX2 Shearing 293T Condition10U
GSM2055453: RBFOX2 Shearing 293T Condition20U; Homo sapiens; OTHER
Sample: SRS1277721
BioProject: PRJNA311053
BioSample: SAMN04461179
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: RBFOX2 Shearing 293T Condition20U
cell line: 293T
rip antibody: RBFOX2
antibody manufacturer: Bethyl
rnase i fragmentation condition: 20 U
Original files (1)
RBFOX2 Shearing 293T Condition20U
GSM2055454: RBFOX2 Shearing 293T Condition40U Rep2; Homo sapiens; OTHER
Sample: SRS1277720
BioProject: PRJNA311053
BioSample: SAMN04461180
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: RBFOX2 Shearing 293T Condition40U
cell line: 293T
rip antibody: RBFOX2
antibody manufacturer: Bethyl
rnase i fragmentation condition: 40 U
Original files (1)
RBFOX2 Shearing 293T Condition40U
GSM2055455: RBFOX2 Shearing 293T Condition80U; Homo sapiens; OTHER
Sample: SRS1277719
BioProject: PRJNA311053
BioSample: SAMN04461181
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: RBFOX2 Shearing 293T Condition80U
cell line: 293T
rip antibody: RBFOX2
antibody manufacturer: Bethyl
rnase i fragmentation condition: 80 U
Original files (1)
RBFOX2 Shearing 293T Condition80U
Linked Publications (1)
Data Files (82)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| — | 293XT_CLIP_IgG_1120_ATTCAGAA-GGCTCTGA_R1.A04_293XT_CLI… | OTHER | 216.9 MB | link | |||
| — | 293XT_CLIP_IgG_1120_ATTCAGAA-GGCTCTGA_R1.F05_293XT_CLI… | OTHER | 276.2 MB | link | |||
| — | 293XT_CLIP_RBFOX2_0204_GAGATTCC-TAATCTTA_R1.A03_293XT_… | OTHER | 2.4 GB | link | |||
| — | 293XT_CLIP_RBFOX2_0204_GAGATTCC-TAATCTTA_R1.G07_293XT_… | OTHER | 525.3 MB | link | |||
| — | 293XT_CLIP_RBFOX2_1120_GAATTCGT-TAATCTTA_R1.A04_293XT_… | OTHER | 1.5 GB | link | |||
| — | 293XT_CLIP_RBFOX2_1120_GAATTCGT-TAATCTTA_R1.F05_293XT_… | OTHER | 1.1 GB | link | |||
| — | 293XT_Input_0204_ATTCAGAA-TAATCTTA_R1.unassigned.rando… | OTHER | 1013.9 MB | link | |||
| — | 293XT_Input_1120_GAATTCGT-GGCTCTGA_R1.unassigned.rando… | OTHER | 1.1 GB | link | |||
| — | 293XT_Input_IgG1120_GAGATTCC-GGCTCTGA_R1.unassigned.ra… | OTHER | 1.1 GB | link | |||
| — | EVN_INPUT_12_ATTACTCG-ATAGAGGC_L007_R1.unassigned.rand… | OTHER | 585.4 MB | link | |||
| — | EVN_INPUT_13_TCCGGAGA-ATAGAGGC_L007_R1.unassigned.rand… | OTHER | 453.0 MB | link | |||
| — | EVN_INPUT_14_CGCTCATT-TATAGCCT_L007_R1.unassigned.rand… | OTHER | 541.5 MB | link | |||
| — | EVN_INPUT_15_GAGATTCC-TATAGCCT_L007_R1.unassigned.rand… | OTHER | 479.0 MB | link | |||
| — | EVN_RBFOX2_pool1_TCCGGAGA-CCTATCCT_L007_R1.A04_EVN_041… | OTHER | 112.1 MB | link | |||
| — | EVN_RBFOX2_pool1_TCCGGAGA-CCTATCCT_L007_R1.F05_EVN_041… | OTHER | 52.5 MB | link | |||
| — | EVN_RBFOX2_pool2_ATTACTCG-GGCTCTGA_L007_R1.A01_EVN_041… | OTHER | 51.1 MB | link | |||
| — | EVN_RBFOX2_pool2_ATTACTCG-GGCTCTGA_L007_R1.A03_EVN_041… | OTHER | 59.9 MB | link | |||
| — | EVN_RBFOX2_pool2_ATTACTCG-GGCTCTGA_L007_R1.A04_EVN_041… | OTHER | 90.4 MB | link | |||
| — | EVN_RBFOX2_pool2_ATTACTCG-GGCTCTGA_L007_R1.B06_EVN_041… | OTHER | 83.8 MB | link | |||
| — | EVN_RBFOX2_pool2_ATTACTCG-GGCTCTGA_L007_R1.F05_EVN_041… | OTHER | 121.4 MB | link | |||
| — | EVN_RBFOX2_pool2_ATTACTCG-GGCTCTGA_L007_R1.G07_EVN_041… | OTHER | 26.1 MB | link | |||
| — | EVN_RBFOX2_pool3_TCCGGAGA-GGCTCTGA_L007_R1.A01_EVN_041… | OTHER | 140.8 MB | link | |||
| — | EVN_RBFOX2_pool3_TCCGGAGA-GGCTCTGA_L007_R1.B06_EVN_041… | OTHER | 171.3 MB | link | |||
| — | EVN_SLBP_pool4_ATTACTCG-CCTATCCT_L007_R1.A01_EVN_04131… | OTHER | 106.7 MB | link | |||
| — | EVN_SLBP_pool4_ATTACTCG-CCTATCCT_L007_R1.A03_EVN_04131… | OTHER | 191.4 MB | link | |||
| — | EVN_SLBP_pool4_ATTACTCG-CCTATCCT_L007_R1.A04_EVN_04131… | OTHER | 220.4 MB | link | |||
| — | EVN_SLBP_pool4_ATTACTCG-CCTATCCT_L007_R1.B06_EVN_04131… | OTHER | 85.8 MB | link | |||
| — | EVN_SLBP_pool4_ATTACTCG-CCTATCCT_L007_R1.C01_EVN_04131… | OTHER | 82.9 MB | link | |||
| — | EVN_SLBP_pool4_ATTACTCG-CCTATCCT_L007_R1.D08fixed_EVN_… | OTHER | 51.2 MB | link | |||
| — | EVN_SLBP_pool4_ATTACTCG-CCTATCCT_L007_R1.F05_EVN_04131… | OTHER | 157.3 MB | link | |||
| — | EVN_SLBP_pool4_ATTACTCG-CCTATCCT_L007_R1.G07_EVN_04131… | OTHER | 101.5 MB | link | |||
| — | FOX2gel-pool1_S1_R1.A01_RBFOX2_293XT_1to12_gel_RBFOX2.… | OTHER | 109.3 MB | link | |||
| — | FOX2gel-pool1_S1_R1.A04_RBFOX2_293XT_1to12_gel_RBFOX2.… | OTHER | 104.9 MB | link | |||
| — | FOX2gel-pool1_S1_R1.B06_RBFOX2_293XT_1to25_gel_RBFOX2.… | OTHER | 86.0 MB | link | |||
| — | FOX2gel-pool1_S1_R1.C01_RBFOX2_293XT_1to50_gel_RBFOX2.… | OTHER | 84.2 MB | link | |||
| — | FOX2gel-pool1_S1_R1.D08fixed_RBFOX2_293XT_1to50_gel_RB… | OTHER | 85.0 MB | link | |||
| — | FOX2gel-pool1_S1_R1.F05_RBFOX2_293XT_1to25_gel_RBFOX2.… | OTHER | 85.9 MB | link | |||
| — | FOX2gel-pool2_S2_R1.A01_RBFOX2_293XT_1to100_gel_RBFOX2… | OTHER | 108.6 MB | link | |||
| — | FOX2gel-pool2_S2_R1.A03_RBFOX2_293XT_1to100_gel_RBFOX2… | OTHER | 129.3 MB | link | |||
| — | FOX2gel-pool2_S2_R1.B06_RBFOX2_293XT_1to200_gel_RBFOX2… | OTHER | 79.6 MB | link | |||
| — | FOX2gel-pool2_S2_R1.F05_RBFOX2_293XT_1to200_gel_RBFOX2… | OTHER | 66.6 MB | link | |||
| — | SRR3147598_GSM2055432 | OTHER | 1.5 GB | link | |||
| — | SRR3147599_GSM2055432 | OTHER | 1.1 GB | link | |||
| — | SRR3147600_GSM2055433 | OTHER | 1.1 GB | link | |||
| — | SRR3147601_GSM2055434 | OTHER | 2.4 GB | link | |||
| — | SRR3147602_GSM2055434 | OTHER | 525.0 MB | link | |||
| — | SRR3147603_GSM2055435 | OTHER | 1013.0 MB | link | |||
| — | SRR3147604_GSM2055436 | OTHER | 216.0 MB | link | |||
| — | SRR3147605_GSM2055436 | OTHER | 276.0 MB | link | |||
| — | SRR3147606_GSM2055437 | OTHER | 1.1 GB | link | |||
| — | SRR3147607_GSM2055438 | OTHER | 220.0 MB | link | |||
| — | SRR3147608_GSM2055438 | OTHER | 157.0 MB | link | |||
| — | SRR3147609_GSM2055439 | OTHER | 585.0 MB | link | |||
| — | SRR3147610_GSM2055440 | OTHER | 191.0 MB | link | |||
| — | SRR3147611_GSM2055440 | OTHER | 101.0 MB | link | |||
| — | SRR3147612_GSM2055441 | OTHER | 452.0 MB | link | |||
| — | SRR3147613_GSM2055442 | OTHER | 106.0 MB | link | |||
| — | SRR3147614_GSM2055442 | OTHER | 85.0 MB | link | |||
| — | SRR3147615_GSM2055443 | OTHER | 541.0 MB | link | |||
| — | SRR3147616_GSM2055444 | OTHER | 82.0 MB | link | |||
| — | SRR3147617_GSM2055444 | OTHER | 51.0 MB | link | |||
| — | SRR3147618_GSM2055445 | OTHER | 479.0 MB | link | |||
| — | SRR3147619_GSM2055446 | OTHER | 140.0 MB | link | |||
| — | SRR3147620_GSM2055446 | OTHER | 171.0 MB | link | |||
| — | SRR3147621_GSM2055447 | OTHER | 51.0 MB | link | |||
| — | SRR3147622_GSM2055447 | OTHER | 83.0 MB | link | |||
| — | SRR3147623_GSM2055448 | OTHER | 112.0 MB | link | |||
| — | SRR3147624_GSM2055448 | OTHER | 52.0 MB | link | |||
| — | SRR3147625_GSM2055449 | OTHER | 90.0 MB | link | |||
| — | SRR3147626_GSM2055449 | OTHER | 121.0 MB | link | |||
| — | SRR3147627_GSM2055450 | OTHER | 59.0 MB | link | |||
| — | SRR3147628_GSM2055450 | OTHER | 26.0 MB | link | |||
| — | SRR3147629_GSM2055451 | OTHER | 79.0 MB | link | |||
| — | SRR3147630_GSM2055451 | OTHER | 66.0 MB | link | |||
| — | SRR3147631_GSM2055452 | OTHER | 108.0 MB | link | |||
| — | SRR3147632_GSM2055452 | OTHER | 129.0 MB | link | |||
| — | SRR3147633_GSM2055453 | OTHER | 84.0 MB | link | |||
| — | SRR3147634_GSM2055453 | OTHER | 84.0 MB | link | |||
| — | SRR3147635_GSM2055454 | OTHER | 85.0 MB | link | |||
| — | SRR3147636_GSM2055454 | OTHER | 85.0 MB | link | |||
| — | SRR3147637_GSM2055455 | OTHER | 109.0 MB | link | |||
| — | SRR3147638_GSM2055455 | OTHER | 104.0 MB | link |