Aging-linked deterioration of RNA metabolism destabilizes the stress response of neurons [eCLIP-seq]
Organism:
Mus musculus
Platform:
GPL24676
Samples:
31
Submitted:
Sep 11 2024
Last Updated:
Feb 19 2025
Status:
Public on Feb 18 2025
Contact:
Kevin,,Rhine (University of Arizona)
Relations
BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1159891
Summary
Aging is one of the most prominent risk factors for neurodegeneration, yet the molecular mechanisms underlying the deterioration of old neurons are mostly unknown. To efficiently study neurodegeneration in the context of aging, we transdifferentiated primary human fibroblasts from aged healthy donors directly into neurons, which retained their aging markers. Here we show that aged neurons are broadly depleted of RNA-binding proteins, especially spliceosome components. Intriguingly, splicing proteins â like the dementia and ALS-associated protein TDP-43 â mislocalize to the cytoplasm in aged neurons, which leads to widespread alternative splicing. Cytoplasmic spliceosome components typically are recruited to stress granules, but aged neurons suffer from chronic stress that prevents this sequestration. We link chronic stress to the malfunctioning ubiquitylation machinery, poor HSP90α chaperone activity, and the failure to respond to new stress events. Together our data demonstrates that aging-linked deterioration of RNA biology is a key driver of poor resiliency in aged neurons.
Overall Design
Enhanced immunoprecipitation and crosslinking followed by sequencing (eCLIP-seq) of RNA-binding proteins in neuron and tissues
SRA Experiments (31) and Runs (31)
Total: 13122 MB
GSM8510692: TDP-43_NGN2_Unstress_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630707
BioProject: PRJNA1159891
BioSample: SAMN43587207
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639407 |
25483978 |
2573881778 |
906.35 |
TDP-43_Ngn2_Unstress-707507_S38_R1_001.fastq.gz, SRR30639407, SRR3063…
|
SRA
|
GSM8510693: TDP-43_NGN2_Unstress_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630708
BioProject: PRJNA1159891
BioSample: SAMN43587206
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639406 |
26551949 |
2681746849 |
949.18 |
TDP-43_Ngn2_Unstress-705507_S41_R1_001.fastq.gz, SRR30639406, SRR3063…
|
SRA
|
GSM8510694: TDP-43_NGN2_Stress_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630709
BioProject: PRJNA1159891
BioSample: SAMN43587205
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: Bethyl #A303-223A; 0.5 mM arsenite for 1 h
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639405 |
17833246 |
1801157846 |
630.54 |
TDP-43_Ngn2_Stress-707508_S34_R1_001.fastq.gz, SRR30639405, SRR306394…
|
SRA
|
GSM8510695: TDP-43_NGN2_Stress_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630710
BioProject: PRJNA1159891
BioSample: SAMN43587204
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: Bethyl #A303-223A; 0.5 mM arsenite for 1 h
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639404 |
17978868 |
1815865668 |
631.41 |
TDP-43_Ngn2_Stress-705508_S37_R1_001.fastq.gz, SRR30639404, SRR306394…
|
SRA
|
GSM8510696: TDP-43_NK_Unstress_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630711
BioProject: PRJNA1159891
BioSample: SAMN43587203
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: Transdifferentiated cortical neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639403 |
18182214 |
1818221400 |
558.69 |
TDP-43_NK_Unstress-ip2_S4_L001_R1_001.fastq.gz, SRR30639403, SRR30639…
|
SRA
|
GSM8510697: TDP-43_NK_Unstress_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630712
BioProject: PRJNA1159891
BioSample: SAMN43587202
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: Transdifferentiated cortical neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639402 |
21140960 |
2114096000 |
652.48 |
TDP-43_NK_Unstress-ip1_S2_L001_R1_001.fastq.gz, SRR30639402, SRR30639…
|
SRA
|
GSM8510698: TDP-43_Young-Age_MouseBrain_IP_1; Mus musculus; RIP-Seq
Sample: SRS22630713
BioProject: PRJNA1159891
BioSample: SAMN43587201
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Mus musculus
Sample attributes
source_name: Cerebellum
tissue: Cerebellum
cell type: Neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639401 |
8767736 |
447154536 |
178.3 |
TDP-43_Young-Age_MouseBrain-3D-IP_S32_L001_R1_001.fastq.gz, SRR306394…
|
SRA
|
GSM8510699: TDP-43_Young-Age_MouseBrain_IP_2; Mus musculus; RIP-Seq
Sample: SRS22630714
BioProject: PRJNA1159891
BioSample: SAMN43587200
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Mus musculus
Sample attributes
source_name: Cerebellum
tissue: Cerebellum
cell type: Neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639400 |
10886307 |
555201657 |
222.28 |
TDP-43_Young-Age_MouseBrain-3C-IP_S31_L001_R1_001.fastq.gz, SRR306394…
|
SRA
|
GSM8510700: TDP-43_Young-Age_MouseBrain_IP_3; Mus musculus; RIP-Seq
Sample: SRS22630715
BioProject: PRJNA1159891
BioSample: SAMN43587199
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Mus musculus
Sample attributes
source_name: Cerebellum
tissue: Cerebellum
cell type: Neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639399 |
10118295 |
516033045 |
205.61 |
TDP-43_Young-Age_MouseBrain-3B-IP_S30_L001_R1_001.fastq.gz, SRR306393…
|
SRA
|
GSM8510701: TDP-43_Young-Age_MouseBrain_IP_4; Mus musculus; RIP-Seq
Sample: SRS22630716
BioProject: PRJNA1159891
BioSample: SAMN43587198
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Mus musculus
Sample attributes
source_name: Cerebellum
tissue: Cerebellum
cell type: Neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639398 |
10098260 |
515011260 |
205.57 |
TDP-43_Young-Age_MouseBrain-3A-IP_S29_L001_R1_001.fastq.gz, SRR306393…
|
SRA
|
GSM8510702: TDP-43_Mid-Age_MouseBrain_IP_1; Mus musculus; RIP-Seq
Sample: SRS22630717
BioProject: PRJNA1159891
BioSample: SAMN43587197
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Mus musculus
Sample attributes
source_name: Cerebellum
tissue: Cerebellum
cell type: Neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639397 |
29911354 |
1525479054 |
505.16 |
TDP-43_Mid-Age_MouseBrain-4T_IP_S18_R1_001.fastq.gz, SRR30639397, SRR…
|
SRA
|
GSM8510703: TDP-43_Mid-Age_MouseBrain_IP_2; Mus musculus; RIP-Seq
Sample: SRS22630718
BioProject: PRJNA1159891
BioSample: SAMN43587196
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Mus musculus
Sample attributes
source_name: Cerebellum
tissue: Cerebellum
cell type: Neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639396 |
23797010 |
1213647510 |
402.41 |
TDP-43_Mid-Age_MouseBrain-3T_IP_S17_R1_001.fastq.gz, SRR30639396, SRR…
|
SRA
|
GSM8510704: TDP-43_Old-Age_MouseBrain_IP_1; Mus musculus; RIP-Seq
Sample: SRS22630719
BioProject: PRJNA1159891
BioSample: SAMN43587195
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Mus musculus
Sample attributes
source_name: Cerebellum
tissue: Cerebellum
cell type: Neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639395 |
33860023 |
1726861173 |
569.78 |
TDP-43_Old-Age_MouseBrain-2T_IP_S16_R1_001.fastq.gz, SRR30639395, SRR…
|
SRA
|
GSM8510705: TDP-43_Old-Age_MouseBrain_IP_2; Mus musculus; RIP-Seq
Sample: SRS22630720
BioProject: PRJNA1159891
BioSample: SAMN43587194
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Mus musculus
Sample attributes
source_name: Cerebellum
tissue: Cerebellum
cell type: Neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639394 |
29901385 |
1524970635 |
503.44 |
TDP-43_Old-Age_MouseBrain-1T_IP_S15_R1_001.fastq.gz, SRR30639394, SRR…
|
SRA
|
GSM8510706: Caprin1_NGN2_Unstress_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630721
BioProject: PRJNA1159891
BioSample: SAMN43587193
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: Bethyl #A303-882A
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639393 |
33583041 |
1712735091 |
529.18 |
Caprin1_Ngn2_Unstress-KR_IP2_S16_R1_001.fastq.gz, SRR30639393, SRR306…
|
SRA
|
GSM8510707: Caprin1_NGN2_Unstress_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630722
BioProject: PRJNA1159891
BioSample: SAMN43587192
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: Bethyl #A303-882A
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639392 |
21475664 |
1095258864 |
341.2 |
Caprin1_Ngn2_Unstress-KR_IP1_S15_R1_001.fastq.gz, SRR30639392, SRR306…
|
SRA
|
GSM8510708: Caprin1_NGN2_Stress_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630723
BioProject: PRJNA1159891
BioSample: SAMN43587191
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: Bethyl #A303-882A; 0.5 mM sodium arsenite
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639391 |
20824285 |
1062038535 |
331.12 |
Caprin1_Ngn2_Stress-KR_IP4_S18_R1_001.fastq.gz, SRR30639391, SRR30639…
|
SRA
|
GSM8510709: Caprin1_NGN2_Stress_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630724
BioProject: PRJNA1159891
BioSample: SAMN43587190
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: Bethyl #A303-882A; 0.5 mM sodium arsenite
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639390 |
22461844 |
1145554044 |
357.89 |
Caprin1_Ngn2_Stress-KR_IP3_S17_R1_001.fastq.gz, SRR30639390, SRR30639…
|
SRA
|
GSM8510710: Caprin1_NK_Unstress_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630725
BioProject: PRJNA1159891
BioSample: SAMN43587189
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: Transdifferentiated cortical neurons
treatment: Bethyl #A303-882A
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639389 |
27522222 |
1403633322 |
433.76 |
Caprin1_NK_Unstress-KR_IP6_S20_R1_001.fastq.gz, SRR30639389, SRR30639…
|
SRA
|
GSM8510711: Caprin1_NK_Unstress_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630726
BioProject: PRJNA1159891
BioSample: SAMN43587188
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: Transdifferentiated cortical neurons
treatment: Bethyl #A303-882A
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639388 |
23751680 |
1211335680 |
376.82 |
Caprin1_NK_Unstress-KR_IP5_S19_R1_001.fastq.gz, SRR30639388, SRR30639…
|
SRA
|
GSM8510712: G3BP1_NGN2_Unstress_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630727
BioProject: PRJNA1159891
BioSample: SAMN43587187
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639387 |
18231738 |
1841405538 |
644.6 |
G3BP1_Ngn2_Unstress-8A_IP_S10_L001_R1_001.fastq.gz, SRR30639387, SRR3…
|
SRA
|
GSM8510713: G3BP1_NGN2_Unstress_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630728
BioProject: PRJNA1159891
BioSample: SAMN43587186
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639386 |
11837032 |
603688632 |
190.14 |
G3BP1_Ngn2_Unstress-KR_1A_G3BP1_U_IP_S40_L001_R1_001.fastq.gz, SRR306…
|
SRA
|
GSM8510714: G3BP1_NGN2_Stress_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630729
BioProject: PRJNA1159891
BioSample: SAMN43587185
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639385 |
10658717 |
543594567 |
174.25 |
G3BP1_Ngn2_Stress-KR_2B_G3BP1_S_IP_S46_L001_R1_001.fastq.gz, SRR30639…
|
SRA
|
GSM8510715: G3BP1_NGN2_Stress_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630730
BioProject: PRJNA1159891
BioSample: SAMN43587184
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639384 |
14774137 |
753480987 |
236.86 |
G3BP1_Ngn2_Stress-KR_2A_G3BP1_S_IP_S44_L001_R1_001.fastq.gz, SRR30639…
|
SRA
|
GSM8510716: G3BP1_NK_Unstress_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630731
BioProject: PRJNA1159891
BioSample: SAMN43587183
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: Transdifferentiated cortical neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639383 |
13546092 |
1368155292 |
425.14 |
G3BP1_NK_Unstress-KR_C_IP_S42_L004_R1_001.fastq.gz, SRR30639383, SRR3…
|
SRA
|
GSM8510717: G3BP1_Mid-Age_HumanBrain_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630733
BioProject: PRJNA1159891
BioSample: SAMN43587182
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Frontal cortex
tissue: Frontal cortex
cell type: Neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639382 |
17005874 |
867299574 |
337.21 |
G3BP1_Mid-Age_HumanBrain-131G-IP_S24_L001_R1_001.fastq.gz, SRR3063938…
|
SRA
|
GSM8510718: G3BP1_Mid-Age_HumanBrain_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630732
BioProject: PRJNA1159891
BioSample: SAMN43587181
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Frontal cortex
tissue: Frontal cortex
cell type: Neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639381 |
16000886 |
816045186 |
320.22 |
G3BP1_Mid-Age_HumanBrain-26G-IP_S20_L001_R1_001.fastq.gz, SRR30639381…
|
SRA
|
GSM8510719: G3BP1_Mid-Age_HumanBrain_IP_3; Homo sapiens; RIP-Seq
Sample: SRS22630734
BioProject: PRJNA1159891
BioSample: SAMN43587180
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Frontal cortex
tissue: Frontal cortex
cell type: Neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639380 |
8062875 |
411206625 |
162.38 |
G3BP1_Mid-Age_HumanBrain-20G-IP_S19_L001_R1_001.fastq.gz, SRR30639380…
|
SRA
|
GSM8510720: G3BP1_Old-Age_HumanBrain_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630735
BioProject: PRJNA1159891
BioSample: SAMN43587179
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Frontal cortex
tissue: Frontal cortex
cell type: Neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639379 |
24760131 |
1262766681 |
493.07 |
G3BP1_Old-Age_HumanBrain-105G-IP_S23_L001_R1_001.fastq.gz, SRR3063937…
|
SRA
|
GSM8510721: G3BP1_Old-Age_HumanBrain_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630736
BioProject: PRJNA1159891
BioSample: SAMN43587178
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Frontal cortex
tissue: Frontal cortex
cell type: Neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639378 |
9277596 |
473157396 |
186.09 |
G3BP1_Old-Age_HumanBrain-67G-IP_S22_L001_R1_001.fastq.gz, SRR30639378…
|
SRA
|
GSM8510722: G3BP1_Old-Age_HumanBrain_IP_3; Homo sapiens; RIP-Seq
Sample: SRS22630737
BioProject: PRJNA1159891
BioSample: SAMN43587177
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Frontal cortex
tissue: Frontal cortex
cell type: Neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Runs (1)
| Run |
Spots |
Bases |
Size (MB) |
Files |
Link |
| SRR30639377 |
23136409 |
1179956859 |
461.11 |
G3BP1_Old-Age_HumanBrain-65G-IP_S21_L001_R1_001.fastq.gz, SRR30639377…
|
SRA
|