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GSE276985

GSE GEO
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Aging-linked deterioration of RNA metabolism destabilizes the stress response of neurons [eCLIP-seq]

Organism: Mus musculus
Platform: GPL24676
Samples: 31
Experiment Types:
Other
Submitted: Sep 11 2024
Last Updated: Feb 19 2025
Status: Public on Feb 18 2025
Contact: Kevin,,Rhine (University of Arizona)

Relations

BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1159891

Summary

Aging is one of the most prominent risk factors for neurodegeneration, yet the molecular mechanisms underlying the deterioration of old neurons are mostly unknown. To efficiently study neurodegeneration in the context of aging, we transdifferentiated primary human fibroblasts from aged healthy donors directly into neurons, which retained their aging markers. Here we show that aged neurons are broadly depleted of RNA-binding proteins, especially spliceosome components. Intriguingly, splicing proteins – like the dementia and ALS-associated protein TDP-43 – mislocalize to the cytoplasm in aged neurons, which leads to widespread alternative splicing. Cytoplasmic spliceosome components typically are recruited to stress granules, but aged neurons suffer from chronic stress that prevents this sequestration. We link chronic stress to the malfunctioning ubiquitylation machinery, poor HSP90α chaperone activity, and the failure to respond to new stress events. Together our data demonstrates that aging-linked deterioration of RNA biology is a key driver of poor resiliency in aged neurons.

Overall Design

Enhanced immunoprecipitation and crosslinking followed by sequencing (eCLIP-seq) of RNA-binding proteins in neuron and tissues

Analysis (2 steps)

View Data Processing
Processing steps for GSE276985
  1. eCLIP data was analyzed using Skipper with default settings.
  2. The kDa of each ORF was matched to the closest input sample beginning at that range; for example, a 78 kDa ORF would be paired with the input sample covering the range of 75 to 150 kDa.

Supplementary Files (1)

GSE276985_RAW.tar Download
GEO Samples (31)

SRA Experiments (31) and Runs (31)

Total: 13122 MB
SRX26061190 SRP532169 RIP-Seq SINGLE
GSM8510692: TDP-43_NGN2_Unstress_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630707
BioProject: PRJNA1159891
BioSample: SAMN43587207
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Kin17ALS1
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639407 25483978 2573881778 906.35 TDP-43_Ngn2_Unstress-707507_S38_R1_001.fastq.gz, SRR30639407, SRR3063… SRA
SRX26061191 SRP532169 RIP-Seq SINGLE
GSM8510693: TDP-43_NGN2_Unstress_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630708
BioProject: PRJNA1159891
BioSample: SAMN43587206
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Kin17ALS1
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639406 26551949 2681746849 949.18 TDP-43_Ngn2_Unstress-705507_S41_R1_001.fastq.gz, SRR30639406, SRR3063… SRA
SRX26061192 SRP532169 RIP-Seq SINGLE
GSM8510694: TDP-43_NGN2_Stress_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630709
BioProject: PRJNA1159891
BioSample: SAMN43587205
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: Bethyl #A303-223A; 0.5 mM arsenite for 1 h
geo_loc_name: missing
collection_date: missing
Original files (1)
Kin17ALS1
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639405 17833246 1801157846 630.54 TDP-43_Ngn2_Stress-707508_S34_R1_001.fastq.gz, SRR30639405, SRR306394… SRA
SRX26061193 SRP532169 RIP-Seq SINGLE
GSM8510695: TDP-43_NGN2_Stress_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630710
BioProject: PRJNA1159891
BioSample: SAMN43587204
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: Bethyl #A303-223A; 0.5 mM arsenite for 1 h
geo_loc_name: missing
collection_date: missing
Original files (1)
Kin17ALS1
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639404 17978868 1815865668 631.41 TDP-43_Ngn2_Stress-705508_S37_R1_001.fastq.gz, SRR30639404, SRR306394… SRA
SRX26061194 SRP532169 RIP-Seq SINGLE
GSM8510696: TDP-43_NK_Unstress_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630711
BioProject: PRJNA1159891
BioSample: SAMN43587203
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: Transdifferentiated cortical neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Kin17ALS1
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639403 18182214 1818221400 558.69 TDP-43_NK_Unstress-ip2_S4_L001_R1_001.fastq.gz, SRR30639403, SRR30639… SRA
SRX26061195 SRP532169 RIP-Seq SINGLE
GSM8510697: TDP-43_NK_Unstress_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630712
BioProject: PRJNA1159891
BioSample: SAMN43587202
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: Transdifferentiated cortical neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Kin17ALS1
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639402 21140960 2114096000 652.48 TDP-43_NK_Unstress-ip1_S2_L001_R1_001.fastq.gz, SRR30639402, SRR30639… SRA
SRX26061196 SRP532169 RIP-Seq SINGLE
GSM8510698: TDP-43_Young-Age_MouseBrain_IP_1; Mus musculus; RIP-Seq
Sample: SRS22630713
BioProject: PRJNA1159891
BioSample: SAMN43587201
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Mus musculus
Sample attributes
source_name: Cerebellum
tissue: Cerebellum
cell type: Neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Cerebellum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639401 8767736 447154536 178.3 TDP-43_Young-Age_MouseBrain-3D-IP_S32_L001_R1_001.fastq.gz, SRR306394… SRA
SRX26061197 SRP532169 RIP-Seq SINGLE
GSM8510699: TDP-43_Young-Age_MouseBrain_IP_2; Mus musculus; RIP-Seq
Sample: SRS22630714
BioProject: PRJNA1159891
BioSample: SAMN43587200
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Mus musculus
Sample attributes
source_name: Cerebellum
tissue: Cerebellum
cell type: Neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Cerebellum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639400 10886307 555201657 222.28 TDP-43_Young-Age_MouseBrain-3C-IP_S31_L001_R1_001.fastq.gz, SRR306394… SRA
SRX26061198 SRP532169 RIP-Seq SINGLE
GSM8510700: TDP-43_Young-Age_MouseBrain_IP_3; Mus musculus; RIP-Seq
Sample: SRS22630715
BioProject: PRJNA1159891
BioSample: SAMN43587199
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Mus musculus
Sample attributes
source_name: Cerebellum
tissue: Cerebellum
cell type: Neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Cerebellum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639399 10118295 516033045 205.61 TDP-43_Young-Age_MouseBrain-3B-IP_S30_L001_R1_001.fastq.gz, SRR306393… SRA
SRX26061199 SRP532169 RIP-Seq SINGLE
GSM8510701: TDP-43_Young-Age_MouseBrain_IP_4; Mus musculus; RIP-Seq
Sample: SRS22630716
BioProject: PRJNA1159891
BioSample: SAMN43587198
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Mus musculus
Sample attributes
source_name: Cerebellum
tissue: Cerebellum
cell type: Neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Cerebellum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639398 10098260 515011260 205.57 TDP-43_Young-Age_MouseBrain-3A-IP_S29_L001_R1_001.fastq.gz, SRR306393… SRA
SRX26061200 SRP532169 RIP-Seq SINGLE
GSM8510702: TDP-43_Mid-Age_MouseBrain_IP_1; Mus musculus; RIP-Seq
Sample: SRS22630717
BioProject: PRJNA1159891
BioSample: SAMN43587197
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Mus musculus
Sample attributes
source_name: Cerebellum
tissue: Cerebellum
cell type: Neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Cerebellum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639397 29911354 1525479054 505.16 TDP-43_Mid-Age_MouseBrain-4T_IP_S18_R1_001.fastq.gz, SRR30639397, SRR… SRA
SRX26061201 SRP532169 RIP-Seq SINGLE
GSM8510703: TDP-43_Mid-Age_MouseBrain_IP_2; Mus musculus; RIP-Seq
Sample: SRS22630718
BioProject: PRJNA1159891
BioSample: SAMN43587196
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Mus musculus
Sample attributes
source_name: Cerebellum
tissue: Cerebellum
cell type: Neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Cerebellum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639396 23797010 1213647510 402.41 TDP-43_Mid-Age_MouseBrain-3T_IP_S17_R1_001.fastq.gz, SRR30639396, SRR… SRA
SRX26061202 SRP532169 RIP-Seq SINGLE
GSM8510704: TDP-43_Old-Age_MouseBrain_IP_1; Mus musculus; RIP-Seq
Sample: SRS22630719
BioProject: PRJNA1159891
BioSample: SAMN43587195
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Mus musculus
Sample attributes
source_name: Cerebellum
tissue: Cerebellum
cell type: Neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Cerebellum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639395 33860023 1726861173 569.78 TDP-43_Old-Age_MouseBrain-2T_IP_S16_R1_001.fastq.gz, SRR30639395, SRR… SRA
SRX26061203 SRP532169 RIP-Seq SINGLE
GSM8510705: TDP-43_Old-Age_MouseBrain_IP_2; Mus musculus; RIP-Seq
Sample: SRS22630720
BioProject: PRJNA1159891
BioSample: SAMN43587194
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Mus musculus
Sample attributes
source_name: Cerebellum
tissue: Cerebellum
cell type: Neurons
treatment: Bethyl #A303-223A
geo_loc_name: missing
collection_date: missing
Original files (1)
Cerebellum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639394 29901385 1524970635 503.44 TDP-43_Old-Age_MouseBrain-1T_IP_S15_R1_001.fastq.gz, SRR30639394, SRR… SRA
SRX26061204 SRP532169 RIP-Seq SINGLE
GSM8510706: Caprin1_NGN2_Unstress_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630721
BioProject: PRJNA1159891
BioSample: SAMN43587193
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: Bethyl #A303-882A
geo_loc_name: missing
collection_date: missing
Original files (1)
Kin17ALS1
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639393 33583041 1712735091 529.18 Caprin1_Ngn2_Unstress-KR_IP2_S16_R1_001.fastq.gz, SRR30639393, SRR306… SRA
SRX26061205 SRP532169 RIP-Seq SINGLE
GSM8510707: Caprin1_NGN2_Unstress_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630722
BioProject: PRJNA1159891
BioSample: SAMN43587192
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: Bethyl #A303-882A
geo_loc_name: missing
collection_date: missing
Original files (1)
Kin17ALS1
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639392 21475664 1095258864 341.2 Caprin1_Ngn2_Unstress-KR_IP1_S15_R1_001.fastq.gz, SRR30639392, SRR306… SRA
SRX26061206 SRP532169 RIP-Seq SINGLE
GSM8510708: Caprin1_NGN2_Stress_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630723
BioProject: PRJNA1159891
BioSample: SAMN43587191
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: Bethyl #A303-882A; 0.5 mM sodium arsenite
geo_loc_name: missing
collection_date: missing
Original files (1)
Kin17ALS1
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639391 20824285 1062038535 331.12 Caprin1_Ngn2_Stress-KR_IP4_S18_R1_001.fastq.gz, SRR30639391, SRR30639… SRA
SRX26061207 SRP532169 RIP-Seq SINGLE
GSM8510709: Caprin1_NGN2_Stress_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630724
BioProject: PRJNA1159891
BioSample: SAMN43587190
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: Bethyl #A303-882A; 0.5 mM sodium arsenite
geo_loc_name: missing
collection_date: missing
Original files (1)
Kin17ALS1
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639390 22461844 1145554044 357.89 Caprin1_Ngn2_Stress-KR_IP3_S17_R1_001.fastq.gz, SRR30639390, SRR30639… SRA
SRX26061208 SRP532169 RIP-Seq SINGLE
GSM8510710: Caprin1_NK_Unstress_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630725
BioProject: PRJNA1159891
BioSample: SAMN43587189
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: Transdifferentiated cortical neurons
treatment: Bethyl #A303-882A
geo_loc_name: missing
collection_date: missing
Original files (1)
Kin17ALS1
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639389 27522222 1403633322 433.76 Caprin1_NK_Unstress-KR_IP6_S20_R1_001.fastq.gz, SRR30639389, SRR30639… SRA
SRX26061209 SRP532169 RIP-Seq SINGLE
GSM8510711: Caprin1_NK_Unstress_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630726
BioProject: PRJNA1159891
BioSample: SAMN43587188
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: Transdifferentiated cortical neurons
treatment: Bethyl #A303-882A
geo_loc_name: missing
collection_date: missing
Original files (1)
Kin17ALS1
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639388 23751680 1211335680 376.82 Caprin1_NK_Unstress-KR_IP5_S19_R1_001.fastq.gz, SRR30639388, SRR30639… SRA
SRX26061210 SRP532169 RIP-Seq SINGLE
GSM8510712: G3BP1_NGN2_Unstress_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630727
BioProject: PRJNA1159891
BioSample: SAMN43587187
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Kin17ALS1
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639387 18231738 1841405538 644.6 G3BP1_Ngn2_Unstress-8A_IP_S10_L001_R1_001.fastq.gz, SRR30639387, SRR3… SRA
SRX26061211 SRP532169 RIP-Seq SINGLE
GSM8510713: G3BP1_NGN2_Unstress_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630728
BioProject: PRJNA1159891
BioSample: SAMN43587186
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Kin17ALS1
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639386 11837032 603688632 190.14 G3BP1_Ngn2_Unstress-KR_1A_G3BP1_U_IP_S40_L001_R1_001.fastq.gz, SRR306… SRA
SRX26061212 SRP532169 RIP-Seq SINGLE
GSM8510714: G3BP1_NGN2_Stress_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630729
BioProject: PRJNA1159891
BioSample: SAMN43587185
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Kin17ALS1
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639385 10658717 543594567 174.25 G3BP1_Ngn2_Stress-KR_2B_G3BP1_S_IP_S46_L001_R1_001.fastq.gz, SRR30639… SRA
SRX26061213 SRP532169 RIP-Seq SINGLE
GSM8510715: G3BP1_NGN2_Stress_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630730
BioProject: PRJNA1159891
BioSample: SAMN43587184
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: iPSC-derived cortical neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Kin17ALS1
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639384 14774137 753480987 236.86 G3BP1_Ngn2_Stress-KR_2A_G3BP1_S_IP_S44_L001_R1_001.fastq.gz, SRR30639… SRA
SRX26061214 SRP532169 RIP-Seq SINGLE
GSM8510716: G3BP1_NK_Unstress_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630731
BioProject: PRJNA1159891
BioSample: SAMN43587183
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: Kin17ALS1
cell line: Kin17ALS1
cell type: Transdifferentiated cortical neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Kin17ALS1
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639383 13546092 1368155292 425.14 G3BP1_NK_Unstress-KR_C_IP_S42_L004_R1_001.fastq.gz, SRR30639383, SRR3… SRA
SRX26061215 SRP532169 RIP-Seq SINGLE
GSM8510717: G3BP1_Mid-Age_HumanBrain_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630733
BioProject: PRJNA1159891
BioSample: SAMN43587182
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Frontal cortex
tissue: Frontal cortex
cell type: Neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Frontal cortex
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639382 17005874 867299574 337.21 G3BP1_Mid-Age_HumanBrain-131G-IP_S24_L001_R1_001.fastq.gz, SRR3063938… SRA
SRX26061216 SRP532169 RIP-Seq SINGLE
GSM8510718: G3BP1_Mid-Age_HumanBrain_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630732
BioProject: PRJNA1159891
BioSample: SAMN43587181
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Frontal cortex
tissue: Frontal cortex
cell type: Neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Frontal cortex
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639381 16000886 816045186 320.22 G3BP1_Mid-Age_HumanBrain-26G-IP_S20_L001_R1_001.fastq.gz, SRR30639381… SRA
SRX26061217 SRP532169 RIP-Seq SINGLE
GSM8510719: G3BP1_Mid-Age_HumanBrain_IP_3; Homo sapiens; RIP-Seq
Sample: SRS22630734
BioProject: PRJNA1159891
BioSample: SAMN43587180
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Frontal cortex
tissue: Frontal cortex
cell type: Neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Frontal cortex
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639380 8062875 411206625 162.38 G3BP1_Mid-Age_HumanBrain-20G-IP_S19_L001_R1_001.fastq.gz, SRR30639380… SRA
SRX26061218 SRP532169 RIP-Seq SINGLE
GSM8510720: G3BP1_Old-Age_HumanBrain_IP_1; Homo sapiens; RIP-Seq
Sample: SRS22630735
BioProject: PRJNA1159891
BioSample: SAMN43587179
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Frontal cortex
tissue: Frontal cortex
cell type: Neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Frontal cortex
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639379 24760131 1262766681 493.07 G3BP1_Old-Age_HumanBrain-105G-IP_S23_L001_R1_001.fastq.gz, SRR3063937… SRA
SRX26061219 SRP532169 RIP-Seq SINGLE
GSM8510721: G3BP1_Old-Age_HumanBrain_IP_2; Homo sapiens; RIP-Seq
Sample: SRS22630736
BioProject: PRJNA1159891
BioSample: SAMN43587178
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Frontal cortex
tissue: Frontal cortex
cell type: Neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Frontal cortex
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639378 9277596 473157396 186.09 G3BP1_Old-Age_HumanBrain-67G-IP_S22_L001_R1_001.fastq.gz, SRR30639378… SRA
SRX26061220 SRP532169 RIP-Seq SINGLE
GSM8510722: G3BP1_Old-Age_HumanBrain_IP_3; Homo sapiens; RIP-Seq
Sample: SRS22630737
BioProject: PRJNA1159891
BioSample: SAMN43587177
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Frontal cortex
tissue: Frontal cortex
cell type: Neurons
treatment: MBLI #RN048PW
geo_loc_name: missing
collection_date: missing
Original files (1)
Frontal cortex
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30639377 23136409 1179956859 461.11 G3BP1_Old-Age_HumanBrain-65G-IP_S21_L001_R1_001.fastq.gz, SRR30639377… SRA

Linked Publications (1)

Data Files (31)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
Caprin1_Ngn2_Stress-KR_IP3_S17_R1_001.fastq.gz RIP-Seq 357.9 MB link
Caprin1_Ngn2_Stress-KR_IP4_S18_R1_001.fastq.gz RIP-Seq 331.1 MB link
Caprin1_Ngn2_Unstress-KR_IP1_S15_R1_001.fastq.gz RIP-Seq 341.2 MB link
Caprin1_Ngn2_Unstress-KR_IP2_S16_R1_001.fastq.gz RIP-Seq 529.2 MB link
Caprin1_NK_Unstress-KR_IP5_S19_R1_001.fastq.gz RIP-Seq 376.8 MB link
Caprin1_NK_Unstress-KR_IP6_S20_R1_001.fastq.gz RIP-Seq 433.8 MB link
G3BP1_Mid-Age_HumanBrain-131G-IP_S24_L001_R1_001.fastq… RIP-Seq 337.2 MB link
G3BP1_Mid-Age_HumanBrain-20G-IP_S19_L001_R1_001.fastq.… RIP-Seq 162.4 MB link
G3BP1_Mid-Age_HumanBrain-26G-IP_S20_L001_R1_001.fastq.… RIP-Seq 320.2 MB link
G3BP1_Ngn2_Stress-KR_2A_G3BP1_S_IP_S44_L001_R1_001.fas… RIP-Seq 236.9 MB link
G3BP1_Ngn2_Stress-KR_2B_G3BP1_S_IP_S46_L001_R1_001.fas… RIP-Seq 174.2 MB link
G3BP1_Ngn2_Unstress-8A_IP_S10_L001_R1_001.fastq.gz RIP-Seq 644.6 MB link
G3BP1_Ngn2_Unstress-KR_1A_G3BP1_U_IP_S40_L001_R1_001.f… RIP-Seq 190.1 MB link
G3BP1_NK_Unstress-KR_C_IP_S42_L004_R1_001.fastq.gz RIP-Seq 425.1 MB link
G3BP1_Old-Age_HumanBrain-105G-IP_S23_L001_R1_001.fastq… RIP-Seq 493.1 MB link
G3BP1_Old-Age_HumanBrain-65G-IP_S21_L001_R1_001.fastq.… RIP-Seq 461.1 MB link
G3BP1_Old-Age_HumanBrain-67G-IP_S22_L001_R1_001.fastq.… RIP-Seq 186.1 MB link
TDP-43_Mid-Age_MouseBrain-3T_IP_S17_R1_001.fastq.gz RIP-Seq 402.4 MB link
TDP-43_Mid-Age_MouseBrain-4T_IP_S18_R1_001.fastq.gz RIP-Seq 505.2 MB link
TDP-43_Ngn2_Stress-705508_S37_R1_001.fastq.gz RIP-Seq 631.4 MB link
TDP-43_Ngn2_Stress-707508_S34_R1_001.fastq.gz RIP-Seq 630.5 MB link
TDP-43_Ngn2_Unstress-705507_S41_R1_001.fastq.gz RIP-Seq 949.2 MB link
TDP-43_Ngn2_Unstress-707507_S38_R1_001.fastq.gz RIP-Seq 906.3 MB link
TDP-43_NK_Unstress-ip1_S2_L001_R1_001.fastq.gz RIP-Seq 652.5 MB link
TDP-43_NK_Unstress-ip2_S4_L001_R1_001.fastq.gz RIP-Seq 558.7 MB link
TDP-43_Old-Age_MouseBrain-1T_IP_S15_R1_001.fastq.gz RIP-Seq 503.4 MB link
TDP-43_Old-Age_MouseBrain-2T_IP_S16_R1_001.fastq.gz RIP-Seq 569.8 MB link
TDP-43_Young-Age_MouseBrain-3A-IP_S29_L001_R1_001.fast… RIP-Seq 205.6 MB link
TDP-43_Young-Age_MouseBrain-3B-IP_S30_L001_R1_001.fast… RIP-Seq 205.6 MB link
TDP-43_Young-Age_MouseBrain-3C-IP_S31_L001_R1_001.fast… RIP-Seq 222.3 MB link
TDP-43_Young-Age_MouseBrain-3D-IP_S32_L001_R1_001.fast… RIP-Seq 178.3 MB link