GSE114820

GSE GEO

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A Transcriptomic Analysis of the Development of Skeletal Muscle Atrophy in Cancer-Cachexia in Tumor-Bearing Mice

Organism: Mus musculus

Platform: GPL17021

Samples: 39

Experiment Types:

Expression profiling by high throughput sequencing

Submitted: May 23 2018

Last Updated: Jan 08 2025

Status: Public on Oct 08 2018

Contact: Nicholas,P.,Greene (University of Arkansas)

Relations

BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA472765 SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP148786

Summary

We recently demonstrated mitochondrial degenerations precede muscle wasting in time course progression of CC. However, the extent of muscle perturbations prior to wasting in CC is unknown. Therefore, we performed global gene expression analysis in CC-induced muscle wasting to enhance understanding of intramuscular perturbations across the development of CC.

Overall Design

Lewis Lung Carcinoma (LLC) was injected into the hind-flank of C57BL6/J mice at 8 wks age with tumor allowed to develop for 1, 2, 3, or 4 wks and compared to PBS injected control. Muscle wasting was evident at 4 wks LLC. Animals were anesthetized using isoflourane and gastrocnemius muscles were collected for analysis. Conclusions: Current findings present novel evidence of transcriptomic shifts and altered cellular pathways in CC-induced muscle wasting.

Analysis (4 steps)

View Data Processing

Processing steps for GSE114820

Sequenced reads were performed quality assessment using FastQC.
Sequenced reads were then aligend to GRCm38.p5 reference genome using Hisat2 tool.
Raw read counts were then obtained from aligned files using HTSeq.
Differential expression was analyzed by DESeq2

Supplementary Files (2)

GSE114820_RAW.tar Download

GSE114820_cachexia_RNASeq.xlsx Download

GEO Samples (39)

GSM3150701 GSM3150702 GSM3150703 GSM3150704 GSM3150705 GSM3150706 GSM3150707 GSM3150708 GSM3150709 GSM3150710 GSM3150711 GSM3150712 GSM3150713 GSM3150714 GSM3150715 GSM3150716 GSM3150717 GSM3150718 GSM3150719 GSM3150720 GSM3150721 GSM3150722 GSM3150723 GSM3150724 GSM3150725 GSM3150726 GSM3150727 GSM3150728 GSM3150729 GSM3150730 GSM3150731 GSM3150732 GSM3150733 GSM3150734 GSM3150735 GSM3150736 GSM3150737 GSM3150738 GSM3150739

Dataset Citations (2)

PubMed citation (PMID 30289747)

PubMed citation (PMID 39466180)

SRA Experiments (39) and Runs (39)

Total: 23081 MB

SRX4116693 SRP148786 RNA-Seq SINGLE

GSM3150701: 10-LLC 4wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331987

BioProject: PRJNA472765

BioSample: SAMN09242131

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 28 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207740	24978289	1248914450	579.42	10_ATTACTCG-ATAGAGGC_L002_R1_001.fastq.gz, SRR7207740, SRR7207740.sra…	SRA

SRX4116694 SRP148786 RNA-Seq SINGLE

GSM3150702: 101-LLC 4wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331973

BioProject: PRJNA472765

BioSample: SAMN09242130

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 28 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207741	24923611	1246180550	579.65	101_GAGATTCC-GTACTGAC_L002_R1_001.fastq.gz, SRR7207741, SRR7207741.sr…	SRA

SRX4116695 SRP148786 RNA-Seq SINGLE

GSM3150703: 104-LLC 4wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331989

BioProject: PRJNA472765

BioSample: SAMN09242129

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 28 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207742	26075236	1303761800	603.87	104_GAGATTCC-CAGGACGT_L002_R1_001.fastq.gz, SRR7207742, SRR7207742.sr…	SRA

SRX4116696 SRP148786 RNA-Seq SINGLE

GSM3150704: 105-LLC 4wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331998

BioProject: PRJNA472765

BioSample: SAMN09242128

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 28 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207743	23530639	1176531950	542.2	105_ATTCAGAA-TATAGCCT_L002_R1_001.fastq.gz, SRR7207743, SRR7207743.sr…	SRA

SRX4116697 SRP148786 RNA-Seq SINGLE

GSM3150705: 107-LLC 4wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331974

BioProject: PRJNA472765

BioSample: SAMN09242127

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 28 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207744	17163994	858199700	479.33	107_CGCTCATT-CCTATCCT_L002_R1_001.fastq.gz, SRR7207744, SRR7207744.sr…	SRA

SRX4116698 SRP148786 RNA-Seq SINGLE

GSM3150706: 11-LLC 4wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331975

BioProject: PRJNA472765

BioSample: SAMN09242126

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 28 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207745	27015477	1350773850	633.68	11_ATTACTCG-CCTATCCT_L004_R1_001.fastq.gz, SRR7207745, SRR7207745.sra…	SRA

SRX4116699 SRP148786 RNA-Seq SINGLE

GSM3150707: 110-LLC 3wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331976

BioProject: PRJNA472765

BioSample: SAMN09242125

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 21 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207746	24019402	1200970100	586.67	110_ATTCAGAA-CCTATCCT_L006_R1_001.fastq.gz, SRR7207746, SRR7207746.sr…	SRA

SRX4116700 SRP148786 RNA-Seq SINGLE

GSM3150708: 111-LLC 3wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331977

BioProject: PRJNA472765

BioSample: SAMN09242124

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 21 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207747	34328116	1716405800	832.03	111_ATTCAGAA-GGCTCTGA_L006_R1_001.fastq.gz, SRR7207747, SRR7207747.sr…	SRA

SRX4116701 SRP148786 RNA-Seq SINGLE

GSM3150709: 112-LLC 3wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331978

BioProject: PRJNA472765

BioSample: SAMN09242123

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 21 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207748	34123584	1706179200	819.92	112_ATTCAGAA-AGGCGAAG_L006_R1_001.fastq.gz, SRR7207748, SRR7207748.sr…	SRA

SRX4116702 SRP148786 RNA-Seq SINGLE

GSM3150710: 114-LLC 3wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3332040

BioProject: PRJNA472765

BioSample: SAMN09242122

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 21 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207749	26378665	1318933250	631.08	114_ATTCAGAA-TAATCTTA_L006_R1_001.fastq.gz, SRR7207749, SRR7207749.sr…	SRA

SRX4116703 SRP148786 RNA-Seq SINGLE

GSM3150711: 12-LLC 4wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331979

BioProject: PRJNA472765

BioSample: SAMN09242121

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 28 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207750	25112365	1255618250	601.04	12_ATTACTCG-GGCTCTGA_L004_R1_001.fastq.gz, SRR7207750, SRR7207750.sra…	SRA

SRX4116704 SRP148786 RNA-Seq SINGLE

GSM3150712: 124-PBS CONTROL; Mus musculus; RNA-Seq

Sample: SRS3331980

BioProject: PRJNA472765

BioSample: SAMN09242120

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 0 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207751	28822550	1441127500	697.51	124_ATTCAGAA-CAGGACGT_L006_R1_001.fastq.gz, SRR7207751, SRR7207751.sr…	SRA

SRX4116705 SRP148786 RNA-Seq SINGLE

GSM3150713: 125-PBS CONTROL; Mus musculus; RNA-Seq

Sample: SRS3331982

BioProject: PRJNA472765

BioSample: SAMN09242119

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 0 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207752	25832355	1291617750	623.08	125_ATTCAGAA-GTACTGAC_L006_R1_001.fastq.gz, SRR7207752, SRR7207752.sr…	SRA

SRX4116706 SRP148786 RNA-Seq SINGLE

GSM3150714: 14-PBS CONTROL; Mus musculus; RNA-Seq

Sample: SRS3331981

BioProject: PRJNA472765

BioSample: SAMN09242118

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 0 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207753	22752005	1137600250	522.08	14_ATTACTCG-AGGCGAAG_L005_R1_001.fastq.gz, SRR7207753, SRR7207753.sra…	SRA

SRX4116707 SRP148786 RNA-Seq SINGLE

GSM3150715: 17-PBS CONTROL; Mus musculus; RNA-Seq

Sample: SRS3331983

BioProject: PRJNA472765

BioSample: SAMN09242115

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 0 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207754	20358843	1017942150	464.16	17_ATTACTCG-TAATCTTA_L005_R1_001.fastq.gz, SRR7207754, SRR7207754.sra…	SRA

SRX4116708 SRP148786 RNA-Seq SINGLE

GSM3150716: 19-PBS CONTROL; Mus musculus; RNA-Seq

Sample: SRS3331984

BioProject: PRJNA472765

BioSample: SAMN09242114

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 0 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207755	21268747	1063437350	490.76	19_ATTACTCG-CAGGACGT_L005_R1_001.fastq.gz, SRR7207755, SRR7207755.sra…	SRA

SRX4116709 SRP148786 RNA-Seq SINGLE

GSM3150717: 2-LLC 4wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331985

BioProject: PRJNA472765

BioSample: SAMN09242103

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 28 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207756	26946077	1347303850	635.38	2_ATTACTCG-TATAGCCT_L004_R1_001.fastq.gz, SRR7207756, SRR7207756.sral…	SRA

SRX4116710 SRP148786 RNA-Seq SINGLE

GSM3150718: 21-LLC 1wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331986

BioProject: PRJNA472765

BioSample: SAMN09242141

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 7 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207757	22450999	1122549950	518.08	21_ATTACTCG-GTACTGAC_L005_R1_001.fastq.gz, SRR7207757, SRR7207757.sra…	SRA

SRX4116711 SRP148786 RNA-Seq SINGLE

GSM3150719: 23-LLC 1wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331988

BioProject: PRJNA472765

BioSample: SAMN09242140

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 7 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207758	23069195	1153459750	545.48	23_TCCGGAGA-TATAGCCT_L004_R1_001.fastq.gz, SRR7207758, SRR7207758.sra…	SRA

SRX4116712 SRP148786 RNA-Seq SINGLE

GSM3150720: 25--LLC 1wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331991

BioProject: PRJNA472765

BioSample: SAMN09242117

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 7 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207759	23488267	1174413350	552.13	25_TCCGGAGA-ATAGAGGC_L004_R1_001.fastq.gz, SRR7207759, SRR7207759.sra…	SRA

SRX4116713 SRP148786 RNA-Seq SINGLE

GSM3150721: 27-LLC 1wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331990

BioProject: PRJNA472765

BioSample: SAMN09242116

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 7 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207760	19390032	969501600	476.06	27_TCCGGAGA-CCTATCCT_L002_R1_001.fastq.gz, SRR7207760, SRR7207760.sra…	SRA

SRX4116714 SRP148786 RNA-Seq SINGLE

GSM3150722: 28b-LLC 1wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331992

BioProject: PRJNA472765

BioSample: SAMN09242139

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 7 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207761	17669318	883465900	414.41	28b_TCCGGAGA-GGCTCTGA_L002_R1_001.fastq.gz, SRR7207761, SRR7207761.sr…	SRA

SRX4116715 SRP148786 RNA-Seq SINGLE

GSM3150723: 30-LLC 2wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331993

BioProject: PRJNA472765

BioSample: SAMN09242138

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 14 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207762	20288230	1014411500	464.42	30_TCCGGAGA-AGGCGAAG_L005_R1_001.fastq.gz, SRR7207762, SRR7207762.sra…	SRA

SRX4116716 SRP148786 RNA-Seq SINGLE

GSM3150724: 30b-LLC 1wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331994

BioProject: PRJNA472765

BioSample: SAMN09242137

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 7 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207763	30319345	1515967250	686.72	30b_TCCGGAGA-TAATCTTA_L005_R1_001.fastq.gz, SRR7207763, SRR7207763.sr…	SRA

SRX4116717 SRP148786 RNA-Seq SINGLE

GSM3150725: 31-LLC 2wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331995

BioProject: PRJNA472765

BioSample: SAMN09242136

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 14 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207764	18822367	941118350	427.21	31_TCCGGAGA-CAGGACGT_L005_R1_001.fastq.gz, SRR7207764, SRR7207764.sra…	SRA

SRX4116718 SRP148786 RNA-Seq SINGLE

GSM3150726: 31b-LLC 1wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331996

BioProject: PRJNA472765

BioSample: SAMN09242135

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 7 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207765	24479280	1223964000	566.8	31b_TCCGGAGA-GTACTGAC_L005_R1_001.fastq.gz, SRR7207765, SRR7207765.sr…	SRA

SRX4116719 SRP148786 RNA-Seq SINGLE

GSM3150727: 32-LLC 2wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331999

BioProject: PRJNA472765

BioSample: SAMN09242134

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 14 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207766	23711253	1185562650	664.53	32_CGCTCATT-TATAGCCT_L002_R1_001.fastq.gz, SRR7207766, SRR7207766.sra…	SRA

SRX4116720 SRP148786 RNA-Seq SINGLE

GSM3150728: 33--LLC 2wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3331997

BioProject: PRJNA472765

BioSample: SAMN09242133

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 14 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207767	20277256	1013862800	601.19	33_CGCTCATT-ATAGAGGC_L004_R1_001.fastq.gz, SRR7207767, SRR7207767.sra…	SRA

SRX4116721 SRP148786 RNA-Seq SINGLE

GSM3150729: 36--LLC 2wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3332000

BioProject: PRJNA472765

BioSample: SAMN09242132

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 14 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207768	22275147	1113757350	651.67	36_CGCTCATT-CCTATCCT_L004_R1_001.fastq.gz, SRR7207768, SRR7207768.sra…	SRA

SRX4116722 SRP148786 RNA-Seq SINGLE

GSM3150730: 36b--LLC 1wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3332001

BioProject: PRJNA472765

BioSample: SAMN09242113

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 7 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207769	20410859	1020542950	571.19	36b_CGCTCATT-AGGCGAAG_L002_R1_001.fastq.gz, SRR7207769, SRR7207769.sr…	SRA

SRX4116723 SRP148786 RNA-Seq SINGLE

GSM3150731: 37-PBS CONTROL; Mus musculus; RNA-Seq

Sample: SRS3332002

BioProject: PRJNA472765

BioSample: SAMN09242112

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 0 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207770	26727014	1336350700	795.05	37_CGCTCATT-TAATCTTA_L006_R1_001.fastq.gz, SRR7207770, SRR7207770.sra…	SRA

SRX4116724 SRP148786 RNA-Seq SINGLE

GSM3150732: 38-PBS CONTROL; Mus musculus; RNA-Seq

Sample: SRS3332003

BioProject: PRJNA472765

BioSample: SAMN09242111

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 0 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207771	20132490	1006624500	586.6	38_CGCTCATT-CAGGACGT_L005_R1_001.fastq.gz, SRR7207771, SRR7207771.sra…	SRA

SRX4116725 SRP148786 RNA-Seq SINGLE

GSM3150733: 41-PBS CONTROL; Mus musculus; RNA-Seq

Sample: SRS3332004

BioProject: PRJNA472765

BioSample: SAMN09242110

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 0 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207772	19306050	965302500	560.88	41_CGCTCATT-GTACTGAC_L005_R1_001.fastq.gz, SRR7207772, SRR7207772.sra…	SRA

SRX4116726 SRP148786 RNA-Seq SINGLE

GSM3150734: 54-LLC 3wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3332043

BioProject: PRJNA472765

BioSample: SAMN09242109

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 21 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207773	22164316	1108215800	527.9	54_GAGATTCC-TATAGCCT_L004_R1_001.fastq.gz, SRR7207773, SRR7207773.sra…	SRA

SRX4116727 SRP148786 RNA-Seq SINGLE

GSM3150735: 56--LLC 3wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3332006

BioProject: PRJNA472765

BioSample: SAMN09242108

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 21 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207774	24147241	1207362050	573.12	56_GAGATTCC-ATAGAGGC_L004_R1_001.fastq.gz, SRR7207774, SRR7207774.sra…	SRA

SRX4116728 SRP148786 RNA-Seq SINGLE

GSM3150736: 57--LLC 3wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3332005

BioProject: PRJNA472765

BioSample: SAMN09242107

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 21 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207775	26355598	1317779900	630.39	57_GAGATTCC-CCTATCCT_L004_R1_001.fastq.gz, SRR7207775, SRR7207775.sra…	SRA

SRX4116729 SRP148786 RNA-Seq SINGLE

GSM3150737: 59--LLC 3wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3332007

BioProject: PRJNA472765

BioSample: SAMN09242106

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 21 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207776	22720499	1136024950	534.52	59_GAGATTCC-GGCTCTGA_L002_R1_001.fastq.gz, SRR7207776, SRR7207776.sra…	SRA

SRX4116730 SRP148786 RNA-Seq SINGLE

GSM3150738: 72--LLC 2wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3332008

BioProject: PRJNA472765

BioSample: SAMN09242105

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 14 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207777	27805444	1390272200	674.39	72_GAGATTCC-AGGCGAAG_L006_R1_001.fastq.gz, SRR7207777, SRR7207777.sra…	SRA

SRX4116731 SRP148786 RNA-Seq SINGLE

GSM3150739: 73--LLC 2wks cancer progression; Mus musculus; RNA-Seq

Sample: SRS3332009

BioProject: PRJNA472765

BioSample: SAMN09242104

Platform: ILLUMINA

Instrument: Illumina HiSeq 2500

Organism: Mus musculus

Sample attributes

source_name: gastrocnemius muscle

strain: C57BL/6

tissue: gastrocnemius muscle

tumor development: 14 days

Original files (1)

gastrocnemius muscle

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR7207778	30187370	1509368500	736.83	73_GAGATTCC-TAATCTTA_L006_R1_001.fastq.gz, SRR7207778, SRR7207778.sra…	SRA

Linked Publications (1)

Zfp697 is an RNA-binding protein that regulates skeletal muscle inflammation and remodeling.

Proceedings of the National Academy of Sciences of the United States of America · 2024

Data Files (39)

Accession	File Name	Stored Type	Size	Download
—	101_GAGATTCC-GTACTGAC_L002_R1_001.fastq.gz	RNA-Seq	579.6 MB	link
—	104_GAGATTCC-CAGGACGT_L002_R1_001.fastq.gz	RNA-Seq	603.9 MB	link
—	105_ATTCAGAA-TATAGCCT_L002_R1_001.fastq.gz	RNA-Seq	542.2 MB	link
—	107_CGCTCATT-CCTATCCT_L002_R1_001.fastq.gz	RNA-Seq	479.3 MB	link
—	10_ATTACTCG-ATAGAGGC_L002_R1_001.fastq.gz	RNA-Seq	579.4 MB	link
—	110_ATTCAGAA-CCTATCCT_L006_R1_001.fastq.gz	RNA-Seq	586.7 MB	link
—	111_ATTCAGAA-GGCTCTGA_L006_R1_001.fastq.gz	RNA-Seq	832.0 MB	link
—	112_ATTCAGAA-AGGCGAAG_L006_R1_001.fastq.gz	RNA-Seq	819.9 MB	link
—	114_ATTCAGAA-TAATCTTA_L006_R1_001.fastq.gz	RNA-Seq	631.1 MB	link
—	11_ATTACTCG-CCTATCCT_L004_R1_001.fastq.gz	RNA-Seq	633.7 MB	link
—	124_ATTCAGAA-CAGGACGT_L006_R1_001.fastq.gz	RNA-Seq	697.5 MB	link
—	125_ATTCAGAA-GTACTGAC_L006_R1_001.fastq.gz	RNA-Seq	623.1 MB	link
—	12_ATTACTCG-GGCTCTGA_L004_R1_001.fastq.gz	RNA-Seq	601.0 MB	link
—	14_ATTACTCG-AGGCGAAG_L005_R1_001.fastq.gz	RNA-Seq	522.1 MB	link
—	17_ATTACTCG-TAATCTTA_L005_R1_001.fastq.gz	RNA-Seq	464.2 MB	link
—	19_ATTACTCG-CAGGACGT_L005_R1_001.fastq.gz	RNA-Seq	490.8 MB	link
—	21_ATTACTCG-GTACTGAC_L005_R1_001.fastq.gz	RNA-Seq	518.1 MB	link
—	23_TCCGGAGA-TATAGCCT_L004_R1_001.fastq.gz	RNA-Seq	545.5 MB	link
—	25_TCCGGAGA-ATAGAGGC_L004_R1_001.fastq.gz	RNA-Seq	552.1 MB	link
—	27_TCCGGAGA-CCTATCCT_L002_R1_001.fastq.gz	RNA-Seq	476.1 MB	link
—	28b_TCCGGAGA-GGCTCTGA_L002_R1_001.fastq.gz	RNA-Seq	414.4 MB	link
—	2_ATTACTCG-TATAGCCT_L004_R1_001.fastq.gz	RNA-Seq	635.4 MB	link
—	30b_TCCGGAGA-TAATCTTA_L005_R1_001.fastq.gz	RNA-Seq	686.7 MB	link
—	30_TCCGGAGA-AGGCGAAG_L005_R1_001.fastq.gz	RNA-Seq	464.4 MB	link
—	31b_TCCGGAGA-GTACTGAC_L005_R1_001.fastq.gz	RNA-Seq	566.8 MB	link
—	31_TCCGGAGA-CAGGACGT_L005_R1_001.fastq.gz	RNA-Seq	427.2 MB	link
—	32_CGCTCATT-TATAGCCT_L002_R1_001.fastq.gz	RNA-Seq	664.5 MB	link
—	33_CGCTCATT-ATAGAGGC_L004_R1_001.fastq.gz	RNA-Seq	601.2 MB	link
—	36b_CGCTCATT-AGGCGAAG_L002_R1_001.fastq.gz	RNA-Seq	571.2 MB	link
—	36_CGCTCATT-CCTATCCT_L004_R1_001.fastq.gz	RNA-Seq	651.7 MB	link
—	37_CGCTCATT-TAATCTTA_L006_R1_001.fastq.gz	RNA-Seq	795.0 MB	link
—	38_CGCTCATT-CAGGACGT_L005_R1_001.fastq.gz	RNA-Seq	586.6 MB	link
—	41_CGCTCATT-GTACTGAC_L005_R1_001.fastq.gz	RNA-Seq	560.9 MB	link
—	54_GAGATTCC-TATAGCCT_L004_R1_001.fastq.gz	RNA-Seq	527.9 MB	link
—	56_GAGATTCC-ATAGAGGC_L004_R1_001.fastq.gz	RNA-Seq	573.1 MB	link
—	57_GAGATTCC-CCTATCCT_L004_R1_001.fastq.gz	RNA-Seq	630.4 MB	link
—	59_GAGATTCC-GGCTCTGA_L002_R1_001.fastq.gz	RNA-Seq	534.5 MB	link
—	72_GAGATTCC-AGGCGAAG_L006_R1_001.fastq.gz	RNA-Seq	674.4 MB	link
—	73_GAGATTCC-TAATCTTA_L006_R1_001.fastq.gz	RNA-Seq	736.8 MB	link