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GSE83687

GSE GEO
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A functional genomics predictive network model identifies regulators of inflammatory bowel disease: Mount Sinai Hospital (MSH) Population Specimen Collection and Profiling of Inflammatory Bowel Disease

Organism: Homo sapiens
Platform: GPL16791
Samples: 134
Experiment Types:
Expression profiling by high throughput sequencing
Submitted: Jun 24 2016
Last Updated: May 15 2019
Status: Public on Jul 07 2017
Contact: Eric,,Schadt (Icahn School of Medicine at Mount Sinai)

Relations

BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA326727 SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP077046

Summary

This study focuses on inflammatory bowel disease gene expression profiling. Surgical specimens from 134 patients undergoing bowel resection for inflammatory bowel disease (IBD) and non IBD controls at Mount Sinai Medical Center were collected as the source of tissue. Control samples (CLs) were harvested from normal non inflamed bowel located more than 10 cm away from the tumor from patients undergoing bowel resection for sporadic colon cancer. Ulcerative colitis (UC) and Crohn’s (CD) patient samples were all isolated from areas containing moderate to severe inflammation. The diagnostic pathology report for each specimen was provided by the Mount Sinai Hospital Pathology Department. Patients with UC and patients with CD shared common medications including corticosteroids, infliximab, azathioprine, and mesalamine.

Overall Design

Surgical specimens from 134 patients undergoing bowel resection for inflammatory bowel disease (IBD) and non IBD controls at Mount Sinai Medical Center were collected as the source of tissue. Control samples (CLs) were harvested from normal non inflamed bowel located more than 10 cm away from the tumor from patients undergoing bowel resection for sporadic colon cancer. Ulcerative colitis (UC) and Crohn’s (CD) patient samples were all isolated from areas containing moderate to severe inflammation. The diagnostic pathology report for each specimen was provided by the Mount Sinai Hospital Pathology Department. Patients with UC and patients with CD shared common medications including corticosteroids, infliximab, azathioprine, and mesalamine. The samples were collected fresh and the tissue was further processed for isolation. A representative 0.5 cm tissue fragment was isolated from the collected surgical specimen samples, flash frozen and stored at -80C. Tissue was homogenized in Trizol following the manufacturer's protocol (Life Technologies) and RNA extraction was performed. RIN scores >7 were used for Poly A RNA-seq.

Analysis (4 steps)

View Data Processing
Processing steps for GSE83687
  1. Illumina Casava1.82 software used for basecalling.
  2. Short reads in fastQ format are processed using RAPiD, which is a RNA-Seq analysis framework developed and maintained by the Technology Development group at Icahn Institute for Genomics and MultiScale Biology. .
  3. RAPiD uses STAR to map the short reads to the [hg19 ] reference and resultant alignment map in BAM format is quantified for gene level expression using featureCounts of the subreads package.
  4. Detailed QC metrics are generated using the RNASeQC package

Supplementary Files (1)

GSE83687_RAW.tar Download
GEO Samples (134)
GSM2212622 GSM2212623 GSM2212624 GSM2212625 GSM2212626 GSM2212627 GSM2212628 GSM2212629 GSM2212630 GSM2212631 GSM2212632 GSM2212633 GSM2212634 GSM2212635 GSM2212636 GSM2212637 GSM2212638 GSM2212639 GSM2212640 GSM2212641 GSM2212642 GSM2212643 GSM2212644 GSM2212645 GSM2212646 GSM2212647 GSM2212648 GSM2212649 GSM2212650 GSM2212651 GSM2212652 GSM2212653 GSM2212654 GSM2212655 GSM2212656 GSM2212657 GSM2212658 GSM2212659 GSM2212660 GSM2212661 GSM2212662 GSM2212663 GSM2212664 GSM2212665 GSM2212666 GSM2212667 GSM2212668 GSM2212669 GSM2212670 GSM2212671 GSM2212672 GSM2212673 GSM2212674 GSM2212675 GSM2212676 GSM2212677 GSM2212678 GSM2212679 GSM2212680 GSM2212681 GSM2212682 GSM2212683 GSM2212684 GSM2212685 GSM2212686 GSM2212687 GSM2212688 GSM2212689 GSM2212690 GSM2212691 GSM2212692 GSM2212693 GSM2212694 GSM2212695 GSM2212696 GSM2212697 GSM2212698 GSM2212699 GSM2212700 GSM2212701 GSM2212702 GSM2212703 GSM2212704 GSM2212705 GSM2212706 GSM2212707 GSM2212708 GSM2212709 GSM2212710 GSM2212711 GSM2212712 GSM2212713 GSM2212714 GSM2212715 GSM2212716 GSM2212717 GSM2212718 GSM2212719 GSM2212720 GSM2212721 GSM2212722 GSM2212723 GSM2212724 GSM2212725 GSM2212726 GSM2212727 GSM2212728 GSM2212729 GSM2212730 GSM2212731 GSM2212732 GSM2212733 GSM2212734 GSM2212735 GSM2212736 GSM2212737 GSM2212738 GSM2212739 GSM2212740 GSM2212741 GSM2212742 GSM2212743 GSM2212744 GSM2212745 GSM2212746 GSM2212747 GSM2212748 GSM2212749 GSM2212750 GSM2212751 GSM2212752 GSM2212753 GSM2212754 GSM2212755

Dataset Citations (1)

PubMed citation (PMID 28892060)

SRA Experiments (134) and Runs (138)

Total: 342657 MB
SRX1874029 SRP077046 RNA-Seq SINGLE
GSM2212622: 10E smallbowel female control S1; Homo sapiens; RNA-Seq
Sample: SRS1523875
BioProject: PRJNA326727
BioSample: SAMN05291556
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: female
clinical condition: control
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714631 22884050 2288405000 1621.59 10E_AGTCAA_L003_R1_001.D2A3AACXX.fastq.gz, SRR3714631, SRR3714631.sra… SRA
SRX1874030 SRP077046 RNA-Seq SINGLE
GSM2212623: 10F rectum male Ulcerative Colitis S2; Homo sapiens; RNA-Seq
Sample: SRS1523876
BioProject: PRJNA326727
BioSample: SAMN05291557
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rectum
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
rectum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714632 20059970 2005997000 1428.08 10F_CCGTCC_L003_R1_001.D2A3AACXX.fastq.gz, SRR3714632, SRR3714632.sra… SRA
SRX1874031 SRP077046 RNA-Seq SINGLE
GSM2212624: 10G rightcolon female control S3; Homo sapiens; RNA-Seq
Sample: SRS1523877
BioProject: PRJNA326727
BioSample: SAMN05291558
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: female
clinical condition: control
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714633 30230832 3023083200 1996.3 10G_GTTTCG_L004_R1_001.D2A3AACXX.fastq.gz, SRR3714633, SRR3714633.sra… SRA
SRX1874032 SRP077046 RNA-Seq SINGLE
GSM2212625: 10H leftcolon male Ulcerative Colitis S4; Homo sapiens; RNA-Seq
Sample: SRS1523878
BioProject: PRJNA326727
BioSample: SAMN05291559
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714634 24945466 2494546600 1711.42 10H_CAAAAG_L005_R1_001.D2A3AACXX.fastq.gz, SRR3714634, SRR3714634.sra… SRA
SRX1874033 SRP077046 RNA-Seq SINGLE
GSM2212626: 10J ileumcecum female Crohn's disease S5; Homo sapiens; RNA-Seq
Sample: SRS1523879
BioProject: PRJNA326727
BioSample: SAMN05291560
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileumcecum
gender: female
clinical condition: Crohn's disease
Original files (1)
ileumcecum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714635 31307460 3130746000 1816.22 10J_GTGGCC_L006_R1_001.D2EBWACXX.fastq.gz, SRR3714635, SRR3714635.sra… SRA
SRX1874034 SRP077046 RNA-Seq SINGLE
GSM2212627: 10K smallbowel female Crohn's disease S6; Homo sapiens; RNA-Seq
Sample: SRS1523880
BioProject: PRJNA326727
BioSample: SAMN05291561
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: female
clinical condition: Crohn's disease
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714636 30243867 3024386700 2109.25 10K_TAGCTT_L006_R1_001.C27U9ACXX.fastq.gz, SRR3714636, SRR3714636.sra… SRA
SRX1874035 SRP077046 RNA-Seq SINGLE
GSM2212628: 10L leftcolon male Ulcerative Colitis S7; Homo sapiens; RNA-Seq
Sample: SRS1523881
BioProject: PRJNA326727
BioSample: SAMN05291562
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714637 35954050 3595405000 2249.82 10L_CCGTCC_L005_R1_001.C03LBACXX.fastq.gz, SRR3714637, SRR3714637.sra… SRA
SRX1874036 SRP077046 RNA-Seq SINGLE
GSM2212629: 10M rightcolon_noninflamed female Ulcerative Colitis S8; Homo sapiens; RNA-Seq
Sample: SRS1523882
BioProject: PRJNA326727
BioSample: SAMN05291570
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon_noninflamed
gender: female
clinical condition: Ulcerative Colitis
Original files (1)
rightcolon_noninflamed
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714638 36129198 3612919800 2236.76 10M_GGTAGC_L006_R1_001.C03LBACXX.fastq.gz, SRR3714638, SRR3714638.sra… SRA
SRX1874037 SRP077046 RNA-Seq SINGLE
GSM2212630: 10O smallbowel male Crohn's disease S9; Homo sapiens; RNA-Seq
Sample: SRS1523883
BioProject: PRJNA326727
BioSample: SAMN05291571
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: male
clinical condition: Crohn's disease
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714639 43698584 4369858400 2754.26 10O_ACTGAT_L003_R1_001.D2EBWACXX.fastq.gz, SRR3714639, SRR3714639.sra… SRA
SRX1874038 SRP077046 RNA-Seq SINGLE
GSM2212631: 10P rightcolon male control S10; Homo sapiens; RNA-Seq
Sample: SRS1523884
BioProject: PRJNA326727
BioSample: SAMN05291572
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: male
clinical condition: control
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714640 40022134 4002213400 2447.1 10P_ACTTGA_L007_R1_001.D2C2AACXX.fastq.gz, SRR3714640, SRR3714640.sra… SRA
SRX1874039 SRP077046 RNA-Seq SINGLE
GSM2212632: 10Q leftcolon male Crohn's disease S11; Homo sapiens; RNA-Seq
Sample: SRS1523885
BioProject: PRJNA326727
BioSample: SAMN05291573
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: Crohn's disease
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714641 40769716 4076971600 2651.63 10Q_AGTCAA_L001_R1_001.D078FACXX.fastq.gz, SRR3714641, SRR3714641.sra… SRA
SRX1874040 SRP077046 RNA-Seq SINGLE
GSM2212633: 10R sigmoid male control S12; Homo sapiens; RNA-Seq
Sample: SRS1523886
BioProject: PRJNA326727
BioSample: SAMN05291574
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: sigmoid
gender: male
clinical condition: control
Original files (1)
sigmoid
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714642 42568888 4256888800 2662.51 10R_GTGAAA_L008_R1_001.D2C2AACXX.fastq.gz, SRR3714642, SRR3714642.sra… SRA
SRX1874041 SRP077046 RNA-Seq SINGLE
GSM2212634: 10S ileum male Crohn's disease S13; Homo sapiens; RNA-Seq
Sample: SRS1523887
BioProject: PRJNA326727
BioSample: SAMN05291563
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: male
clinical condition: Crohn's disease
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714643 37982516 3798251600 2505.71 10S_CACCGG_L004_R1_001.D078FACXX.fastq.gz, SRR3714643, SRR3714643.sra… SRA
SRX1874042 SRP077046 RNA-Seq SINGLE
GSM2212635: 10U sigmoid male Crohn's disease S14; Homo sapiens; RNA-Seq
Sample: SRS1523888
BioProject: PRJNA326727
BioSample: SAMN05291564
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: sigmoid
gender: male
clinical condition: Crohn's disease
Original files (1)
sigmoid
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714644 47623221 4762322100 3145.41 10U_GACGAC_L006_R1_001.D078FACXX.fastq.gz, SRR3714644, SRR3714644.sra… SRA
SRX1874043 SRP077046 RNA-Seq SINGLE
GSM2212636: 10V rightcolon female control S15; Homo sapiens; RNA-Seq
Sample: SRS1523889
BioProject: PRJNA326727
BioSample: SAMN05291565
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: female
clinical condition: control
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714645 30668727 3066872700 2039.47 10V_TCCCGA_L007_R1_001.D078FACXX.fastq.gz, SRR3714645, SRR3714645.sra… SRA
SRX1874044 SRP077046 RNA-Seq SINGLE
GSM2212637: 10W rightcolon female control S16; Homo sapiens; RNA-Seq
Sample: SRS1523890
BioProject: PRJNA326727
BioSample: SAMN05291575
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: female
clinical condition: control
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714646 38962625 3896262500 2497.31 10W_TGACCA_L001_R1_001.D2EBWACXX.fastq.gz, SRR3714646, SRR3714646.sra… SRA
SRX1874045 SRP077046 RNA-Seq SINGLE
GSM2212638: 11B ileocolic male control S17; Homo sapiens; RNA-Seq
Sample: SRS1523891
BioProject: PRJNA326727
BioSample: SAMN05291576
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileocolic
gender: male
clinical condition: control
Original files (1)
ileocolic
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714647 39620081 3962008100 2502.03 11B_AGTCAA_L003_R1_001.D2EBWACXX.fastq.gz, SRR3714647, SRR3714647.sra… SRA
SRX1874046 SRP077046 RNA-Seq SINGLE
GSM2212639: 11E smallbowel female control S18; Homo sapiens; RNA-Seq
Sample: SRS1523892
BioProject: PRJNA326727
BioSample: SAMN05291577
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: female
clinical condition: control
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714648 41076737 4107673700 2591.47 11E_ATGTCA_L003_R1_001.D2EBWACXX.fastq.gz, SRR3714648, SRR3714648.sra… SRA
SRX1874047 SRP077046 RNA-Seq SINGLE
GSM2212640: 11I leftcolon female Ulcerative Colitis S19; Homo sapiens; RNA-Seq
Sample: SRS1523893
BioProject: PRJNA326727
BioSample: SAMN05291578
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: female
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714649 38116927 3811692700 2457.24 11I_CGATGT_L006_R1_001.D2A3AACXX.fastq.gz, SRR3714649, SRR3714649.sra… SRA
SRX1874048 SRP077046 RNA-Seq SINGLE
GSM2212641: 11L leftcolon male Ulcerative Colitis S20; Homo sapiens; RNA-Seq
Sample: SRS1523894
BioProject: PRJNA326727
BioSample: SAMN05291579
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714650 26764838 2676483800 1550.82 11L_CGTACG_L006_R1_001.D2EBWACXX.fastq.gz, SRR3714650, SRR3714650.sra… SRA
SRX1874049 SRP077046 RNA-Seq SINGLE
GSM2212642: 11P rightcolon female Ulcerative Colitis S21; Homo sapiens; RNA-Seq
Sample: SRS1523895
BioProject: PRJNA326727
BioSample: SAMN05291580
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: female
clinical condition: Ulcerative Colitis
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714651 31792897 3179289700 1936.74 11P_GATCAG_L007_R1_001.D2C2AACXX.fastq.gz, SRR3714651, SRR3714651.sra… SRA
SRX1874050 SRP077046 RNA-Seq SINGLE
GSM2212643: 11R rightcolon male control S22; Homo sapiens; RNA-Seq
Sample: SRS1523896
BioProject: PRJNA326727
BioSample: SAMN05291581
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: male
clinical condition: control
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714652 33014296 3301429600 2078.01 11R_GTGGCC_L008_R1_001.D2C2AACXX.fastq.gz, SRR3714652, SRR3714652.sra… SRA
SRX1874051 SRP077046 RNA-Seq SINGLE
GSM2212644: 11S rightcolon female control S23; Homo sapiens; RNA-Seq
Sample: SRS1523897
BioProject: PRJNA326727
BioSample: SAMN05291582
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: female
clinical condition: control
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714653 36014140 3601414000 2367.02 11S_CACGAT_L004_R1_001.D078FACXX.fastq.gz, SRR3714653, SRR3714653.sra… SRA
SRX1874052 SRP077046 RNA-Seq SINGLE
GSM2212645: 11T rightcolon female Crohn's disease S24; Homo sapiens; RNA-Seq
Sample: SRS1523898
BioProject: PRJNA326727
BioSample: SAMN05291583
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: female
clinical condition: Crohn's disease
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714654 36656773 3665677300 2320.15 11T_CGGAAT_L005_R1_001.D078FACXX.fastq.gz, SRR3714654, SRR3714654.sra… SRA
SRX1874053 SRP077046 RNA-Seq SINGLE
GSM2212646: 11U smallbowel female control S25; Homo sapiens; RNA-Seq
Sample: SRS1523899
BioProject: PRJNA326727
BioSample: SAMN05291584
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: female
clinical condition: control
Original files (1)
smallbowel
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3714655 34348787 3434878700 2266.96 11U_TAATCG_L006_R1_001.D078FACXX.fastq.gz, SRR3714655, SRR3714655.sra… SRA
SRR3714656 131425740 13142574000 8573.19 11U_XXXXXX_L000_R1_001.Multiple.fastq.gz, SRR3714656, SRR3714656.sral… SRA
SRX1874054 SRP077046 RNA-Seq SINGLE
GSM2212647: 11W rightcolon female control S26; Homo sapiens; RNA-Seq
Sample: SRS1523900
BioProject: PRJNA326727
BioSample: SAMN05291585
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: female
clinical condition: control
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714657 49397099 4939709900 3157.13 11W_ACAGTG_L001_R1_001.D2EBWACXX.fastq.gz, SRR3714657, SRR3714657.sra… SRA
SRX1874055 SRP077046 RNA-Seq SINGLE
GSM2212648: 12F_6M leftcolon male control S27; Homo sapiens; RNA-Seq
Sample: SRS1523901
BioProject: PRJNA326727
BioSample: SAMN05291586
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: control
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714658 48848501 4884850100 3216.62 12F_6M_GTAGAG_L004_R1_001.D2A3AACXX.fastq.gz, SRR3714658, SRR3714658.… SRA
SRX1874056 SRP077046 RNA-Seq SINGLE
GSM2212649: 12H ileum female Crohn's disease S28; Homo sapiens; RNA-Seq
Sample: SRS1523902
BioProject: PRJNA326727
BioSample: SAMN05291587
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: female
clinical condition: Crohn's disease
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714659 56618656 5661865600 3867.67 12H_CAACTA_L005_R1_001.D2A3AACXX.fastq.gz, SRR3714659, SRR3714659.sra… SRA
SRX1874057 SRP077046 RNA-Seq SINGLE
GSM2212650: 12L rightcolon male Ulcerative Colitis S29; Homo sapiens; RNA-Seq
Sample: SRS1523903
BioProject: PRJNA326727
BioSample: SAMN05291588
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714660 37861615 3786161500 2352.5 12L_GTAGAG_L005_R1_001.C03LBACXX.fastq.gz, SRR3714660, SRR3714660.sra… SRA
SRX1874058 SRP077046 RNA-Seq SINGLE
GSM2212651: 12M leftcolon male Ulcerative Colitis S30; Homo sapiens; RNA-Seq
Sample: SRS1523904
BioProject: PRJNA326727
BioSample: SAMN05291589
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714661 37918972 3791897200 2342.22 12M_ACTGAT_L006_R1_001.C03LBACXX.fastq.gz, SRR3714661, SRR3714661.sra… SRA
SRX1874059 SRP077046 RNA-Seq SINGLE
GSM2212652: 12O smallbowel female Crohn's disease S31; Homo sapiens; RNA-Seq
Sample: SRS1523905
BioProject: PRJNA326727
BioSample: SAMN05291590
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: female
clinical condition: Crohn's disease
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714662 12888492 1288849200 812.93 12O_ATGAGC_L005_R1_001.D2EBWACXX.fastq.gz, SRR3714662, SRR3714662.sra… SRA
SRX1874060 SRP077046 RNA-Seq SINGLE
GSM2212653: 12P rightcolon male Ulcerative Colitis S32; Homo sapiens; RNA-Seq
Sample: SRS1523906
BioProject: PRJNA326727
BioSample: SAMN05291591
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714663 38804309 3880430900 2370.66 12P_TAGCTT_L007_R1_001.D2C2AACXX.fastq.gz, SRR3714663, SRR3714663.sra… SRA
SRX1874061 SRP077046 RNA-Seq SINGLE
GSM2212654: 12R rightcolon female control S33; Homo sapiens; RNA-Seq
Sample: SRS1523908
BioProject: PRJNA326727
BioSample: SAMN05291592
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: female
clinical condition: control
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714664 33163333 3316333300 2127.1 12R_GTTTCG_L002_R1_001.D078FACXX.fastq.gz, SRR3714664, SRR3714664.sra… SRA
SRX1874062 SRP077046 RNA-Seq SINGLE
GSM2212655: 12S rightcolon male control S34; Homo sapiens; RNA-Seq
Sample: SRS1523907
BioProject: PRJNA326727
BioSample: SAMN05291593
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: male
clinical condition: control
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714665 32817491 3281749100 2163.83 12S_CACTCA_L004_R1_001.D078FACXX.fastq.gz, SRR3714665, SRR3714665.sra… SRA
SRX1874063 SRP077046 RNA-Seq SINGLE
GSM2212656: 12T sigmoid female Ulcerative Colitis S35; Homo sapiens; RNA-Seq
Sample: SRS1523909
BioProject: PRJNA326727
BioSample: SAMN05291594
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: sigmoid
gender: female
clinical condition: Ulcerative Colitis
Original files (1)
sigmoid
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3714666 33972929 3397292900 2220.31 12T_CTAGCT_L001_R1_001.D078FACXX.fastq.gz, SRR3714666, SRR3714666.sra… SRA
SRR3714667 121320302 12132030200 7946.74 12T_XXXXXX_L000_R1_001.Multiple.fastq.gz, SRR3714667, SRR3714667.sral… SRA
SRX1874064 SRP077046 RNA-Seq SINGLE
GSM2212657: 12U leftcolon female control S36; Homo sapiens; RNA-Seq
Sample: SRS1523910
BioProject: PRJNA326727
BioSample: SAMN05291595
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: female
clinical condition: control
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714668 37650583 3765058300 2494.88 12U_TACAGC_L006_R1_001.D078FACXX.fastq.gz, SRR3714668, SRR3714668.sra… SRA
SRX1874065 SRP077046 RNA-Seq SINGLE
GSM2212658: 12W smallbowel male control S37; Homo sapiens; RNA-Seq
Sample: SRS1523911
BioProject: PRJNA326727
BioSample: SAMN05291596
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: male
clinical condition: control
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714669 41673775 4167377500 2672.19 12W_GCCAAT_L001_R1_001.D2EBWACXX.fastq.gz, SRR3714669, SRR3714669.sra… SRA
SRX1874066 SRP077046 RNA-Seq SINGLE
GSM2212659: 1C sigmoid female control S38; Homo sapiens; RNA-Seq
Sample: SRS1523912
BioProject: PRJNA326727
BioSample: SAMN05291597
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: sigmoid
gender: female
clinical condition: control
Original files (1)
sigmoid
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714670 31004973 3100497300 1833.94 1C_GGCTAC_L004_R1_001.D2EBWACXX.fastq.gz, SRR3714670, SRR3714670.sral… SRA
SRX1874067 SRP077046 RNA-Seq SINGLE
GSM2212660: 1D_7D sigmoid female control S39; Homo sapiens; RNA-Seq
Sample: SRS1523913
BioProject: PRJNA326727
BioSample: SAMN05291527
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: sigmoid
gender: female
clinical condition: control
Original files (1)
sigmoid
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714671 41751343 4175134300 2667.36 SRR3714671, SRR3714671.sralite, 1D_7D_TAGCTT_L001_R1_001.D2EBWACXX.fa… SRA
SRX1874068 SRP077046 RNA-Seq SINGLE
GSM2212661: 1F ileum female control S40; Homo sapiens; RNA-Seq
Sample: SRS1523915
BioProject: PRJNA326727
BioSample: SAMN05291528
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: female
clinical condition: control
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714672 22740809 2274080900 1495.84 1F_CCGTCC_L002_R1_001.D2EBWACXX.fastq.gz, SRR3714672, SRR3714672.sral… SRA
SRX1874069 SRP077046 RNA-Seq SINGLE
GSM2212662: 1I sigmoid male control S41; Homo sapiens; RNA-Seq
Sample: SRS1523914
BioProject: PRJNA326727
BioSample: SAMN05291529
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: sigmoid
gender: male
clinical condition: control
Original files (1)
sigmoid
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714673 53513323 5351332300 3477.63 1I_TTAGGC_L006_R1_001.D2A3AACXX.fastq.gz, SRR3714673, SRR3714673.sral… SRA
SRX1874070 SRP077046 RNA-Seq SINGLE
GSM2212663: 1M rectum male Ulcerative Colitis S42; Homo sapiens; RNA-Seq
Sample: SRS1523916
BioProject: PRJNA326727
BioSample: SAMN05291530
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rectum
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
rectum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714674 34380927 3438092700 2145.32 SRR3714674, SRR3714674.sralite, 1M_GTCCGC_L005_R1_001.C03LBACXX.fastq… SRA
SRX1874071 SRP077046 RNA-Seq SINGLE
GSM2212664: 1O smallbowel female Crohn's disease S43; Homo sapiens; RNA-Seq
Sample: SRS1523917
BioProject: PRJNA326727
BioSample: SAMN05291598
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: female
clinical condition: Crohn's disease
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714675 38248788 3824878800 2421.02 1O_CACCGG_L007_R1_001.C03LBACXX.fastq.gz, SRR3714675, SRR3714675.sral… SRA
SRX1874072 SRP077046 RNA-Seq SINGLE
GSM2212665: 1P leftcolon male Ulcerative Colitis S44; Homo sapiens; RNA-Seq
Sample: SRS1523918
BioProject: PRJNA326727
BioSample: SAMN05291599
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714676 39581911 3958191100 2502.68 1P_TTAGGC_L006_R1_001.D2C2AACXX.fastq.gz, SRR3714676, SRR3714676.sral… SRA
SRX1874073 SRP077046 RNA-Seq SINGLE
GSM2212666: 1R colon male control S45; Homo sapiens; RNA-Seq
Sample: SRS1523919
BioProject: PRJNA326727
BioSample: SAMN05291526
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: colon
gender: male
clinical condition: control
Original files (1)
colon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714677 36646495 3664649500 2351.32 1R_AGTTCC_L002_R1_001.D078FACXX.fastq.gz, SRR3714677, SRR3714677.sral… SRA
SRX1874074 SRP077046 RNA-Seq SINGLE
GSM2212667: 1T colon female control S46; Homo sapiens; RNA-Seq
Sample: SRS1523920
BioProject: PRJNA326727
BioSample: SAMN05291531
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: colon
gender: female
clinical condition: control
Original files (1)
colon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714678 48899641 4889964100 3230.47 1T_CAGGCG_L004_R1_001.D078FACXX.fastq.gz, SRR3714678, SRR3714678.sral… SRA
SRX1874075 SRP077046 RNA-Seq SINGLE
GSM2212668: 1Y colon male control S47; Homo sapiens; RNA-Seq
Sample: SRS1523921
BioProject: PRJNA326727
BioSample: SAMN05291532
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: colon
gender: male
clinical condition: control
Original files (1)
colon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714679 28143711 2814371100 1841.17 1Y_CAGATC_L002_R1_001.D2EBWACXX.fastq.gz, SRR3714679, SRR3714679.sral… SRA
SRX1874076 SRP077046 RNA-Seq SINGLE
GSM2212669: 2D rightcolon male control S48; Homo sapiens; RNA-Seq
Sample: SRS1523922
BioProject: PRJNA326727
BioSample: SAMN05291533
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: male
clinical condition: control
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714680 33171811 3317181100 2306.89 2D_ACAGTG_L001_R1_001.D2A3AACXX.fastq.gz, SRR3714680, SRR3714680.sral… SRA
SRX1874077 SRP077046 RNA-Seq SINGLE
GSM2212670: 2E smallbowel male control S49; Homo sapiens; RNA-Seq
Sample: SRS1523923
BioProject: PRJNA326727
BioSample: SAMN05291534
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: male
clinical condition: control
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714681 29158717 2915871700 2033.86 2E_GATCAG_L002_R1_001.D2A3AACXX.fastq.gz, SRR3714681, SRR3714681.sral… SRA
SRX1874078 SRP077046 RNA-Seq SINGLE
GSM2212671: 2F sigmoid male control S50; Homo sapiens; RNA-Seq
Sample: SRS1523924
BioProject: PRJNA326727
BioSample: SAMN05291535
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: sigmoid
gender: male
clinical condition: control
Original files (1)
sigmoid
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714682 31052286 3105228600 2035.24 2F_CACCGG_L002_R1_001.D2EBWACXX.fastq.gz, SRR3714682, SRR3714682.sral… SRA
SRX1874079 SRP077046 RNA-Seq SINGLE
GSM2212672: 2I sigmoid male control S51; Homo sapiens; RNA-Seq
Sample: SRS1523925
BioProject: PRJNA326727
BioSample: SAMN05291536
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: sigmoid
gender: male
clinical condition: control
Original files (1)
sigmoid
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714683 38509623 3850962300 2483.14 2I_TGACCA_L006_R1_001.D2A3AACXX.fastq.gz, SRR3714683, SRR3714683.sral… SRA
SRX1874080 SRP077046 RNA-Seq SINGLE
GSM2212673: 2J ileum male Crohn's disease S52; Homo sapiens; RNA-Seq
Sample: SRS1523926
BioProject: PRJNA326727
BioSample: SAMN05291537
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: male
clinical condition: Crohn's disease
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714684 57521716 5752171600 3791.98 2J_GAGTGG_L004_R1_001.D2A3AACXX.fastq.gz, SRR3714684, SRR3714684.sral… SRA
SRX1874081 SRP077046 RNA-Seq SINGLE
GSM2212674: 2K ileum male Crohn's disease S53; Homo sapiens; RNA-Seq
Sample: SRS1523927
BioProject: PRJNA326727
BioSample: SAMN05291538
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: male
clinical condition: Crohn's disease
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714685 32516800 3251680000 1873.13 2K_GTTTCG_L006_R1_001.D2EBWACXX.fastq.gz, SRR3714685, SRR3714685.sral… SRA
SRX1874082 SRP077046 RNA-Seq SINGLE
GSM2212675: 2L smallbowel male Crohn's disease S54; Homo sapiens; RNA-Seq
Sample: SRS1523928
BioProject: PRJNA326727
BioSample: SAMN05291539
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: male
clinical condition: Crohn's disease
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714686 36433395 3643339500 2453.1 2L_GGCTAC_L007_R1_001.C27U9ACXX.fastq.gz, SRR3714686, SRR3714686.sral… SRA
SRX1874083 SRP077046 RNA-Seq SINGLE
GSM2212676: 2M rectosigmoid female control S55; Homo sapiens; RNA-Seq
Sample: SRS1523929
BioProject: PRJNA326727
BioSample: SAMN05291540
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rectosigmoid
gender: female
clinical condition: control
Original files (1)
rectosigmoid
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714687 31491184 3149118400 1960.0 2M_GTGAAA_L005_R1_001.C03LBACXX.fastq.gz, SRR3714687, SRR3714687.sral… SRA
SRX1874084 SRP077046 RNA-Seq SINGLE
GSM2212677: 2N leftcolon female control S56; Homo sapiens; RNA-Seq
Sample: SRS1523930
BioProject: PRJNA326727
BioSample: SAMN05291541
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: female
clinical condition: control
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714688 14612197 1461219700 925.75 2N_ATGAGC_L007_R1_001.C03LBACXX.fastq.gz, SRR3714688, SRR3714688.sral… SRA
SRX1874085 SRP077046 RNA-Seq SINGLE
GSM2212678: 2P ileum male Crohn's disease S57; Homo sapiens; RNA-Seq
Sample: SRS1523931
BioProject: PRJNA326727
BioSample: SAMN05291542
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: male
clinical condition: Crohn's disease
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714689 38544179 3854417900 2411.75 2P_TGACCA_L006_R1_001.D2C2AACXX.fastq.gz, SRR3714689, SRR3714689.sral… SRA
SRX1874086 SRP077046 RNA-Seq SINGLE
GSM2212679: 2Q rightcolon_inflamed female Crohn's disease S58; Homo sapiens; RNA-Seq
Sample: SRS1523932
BioProject: PRJNA326727
BioSample: SAMN05291543
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon_inflamed
gender: female
clinical condition: Crohn's disease
Original files (1)
rightcolon_inflamed
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714690 48159279 4815927900 3033.36 2Q_ATTCCT_L005_R1_001.D2EBWACXX.fastq.gz, SRR3714690, SRR3714690.sral… SRA
SRX1874087 SRP077046 RNA-Seq SINGLE
GSM2212680: 2R rightcolon female control S59; Homo sapiens; RNA-Seq
Sample: SRS1523933
BioProject: PRJNA326727
BioSample: SAMN05291544
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: female
clinical condition: control
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714691 36873825 3687382500 2399.48 2R_ATGTCA_L001_R1_001.D078FACXX.fastq.gz, SRR3714691, SRR3714691.sral… SRA
SRX1874088 SRP077046 RNA-Seq SINGLE
GSM2212681: 2S leftcolon female Crohn's disease S60; Homo sapiens; RNA-Seq
Sample: SRS1523934
BioProject: PRJNA326727
BioSample: SAMN05291545
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: female
clinical condition: Crohn's disease
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714692 37478752 3747875200 2389.5 2S_CGTACG_L005_R1_001.D078FACXX.fastq.gz, SRR3714692, SRR3714692.sral… SRA
SRX1874089 SRP077046 RNA-Seq SINGLE
GSM2212682: 2T rightcolon female control S61; Homo sapiens; RNA-Seq
Sample: SRS1523935
BioProject: PRJNA326727
BioSample: SAMN05291546
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: female
clinical condition: control
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714693 38371083 3837108300 2508.14 2T_CATGGC_L001_R1_001.D078FACXX.fastq.gz, SRR3714693, SRR3714693.sral… SRA
SRX1874090 SRP077046 RNA-Seq SINGLE
GSM2212683: 2Y sigmoid male control S62; Homo sapiens; RNA-Seq
Sample: SRS1523936
BioProject: PRJNA326727
BioSample: SAMN05291547
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: sigmoid
gender: male
clinical condition: control
Original files (1)
sigmoid
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714694 41469662 4146966200 2706.3 2Y_ACTTGA_L002_R1_001.D2EBWACXX.fastq.gz, SRR3714694, SRR3714694.sral… SRA
SRX1874091 SRP077046 RNA-Seq SINGLE
GSM2212684: 3B sigmoid male control S63; Homo sapiens; RNA-Seq
Sample: SRS1523937
BioProject: PRJNA326727
BioSample: SAMN05291548
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: sigmoid
gender: male
clinical condition: control
Original files (1)
sigmoid
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714695 48484415 4848441500 3398.02 3B_TTAGGC_L001_R1_001.D2A3AACXX.fastq.gz, SRR3714695, SRR3714695.sral… SRA
SRX1874092 SRP077046 RNA-Seq SINGLE
GSM2212685: 3G transversecolon female control S64; Homo sapiens; RNA-Seq
Sample: SRS1523938
BioProject: PRJNA326727
BioSample: SAMN05291549
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: transversecolon
gender: female
clinical condition: control
Original files (1)
transversecolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714696 38215932 3821593200 2426.99 3G_GTCCGC_L003_R1_001.D2EBWACXX.fastq.gz, SRR3714696, SRR3714696.sral… SRA
SRX1874093 SRP077046 RNA-Seq SINGLE
GSM2212686: 3I leftcolon female Ulcerative Colitis S65; Homo sapiens; RNA-Seq
Sample: SRS1523939
BioProject: PRJNA326727
BioSample: SAMN05291550
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: female
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714697 32084774 3208477400 2075.25 3I_ACAGTG_L006_R1_001.D2A3AACXX.fastq.gz, SRR3714697, SRR3714697.sral… SRA
SRX1874094 SRP077046 RNA-Seq SINGLE
GSM2212687: 3K leftcolon female Ulcerative Colitis S66; Homo sapiens; RNA-Seq
Sample: SRS1523940
BioProject: PRJNA326727
BioSample: SAMN05291551
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: female
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714698 16724614 1672461400 1172.01 3K_CAGATC_L006_R1_001.C27U9ACXX.fastq.gz, SRR3714698, SRR3714698.sral… SRA
SRX1874095 SRP077046 RNA-Seq SINGLE
GSM2212688: 3M smallbowel male control S67; Homo sapiens; RNA-Seq
Sample: SRS1523941
BioProject: PRJNA326727
BioSample: SAMN05291552
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: male
clinical condition: control
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714699 33801024 3380102400 2104.4 3M_GTGGCC_L005_R1_001.C03LBACXX.fastq.gz, SRR3714699, SRR3714699.sral… SRA
SRX1874096 SRP077046 RNA-Seq SINGLE
GSM2212689: 3N colon male Crohn's disease S68; Homo sapiens; RNA-Seq
Sample: SRS1523942
BioProject: PRJNA326727
BioSample: SAMN05291553
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: colon
gender: male
clinical condition: Crohn's disease
Original files (1)
colon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714700 35070505 3507050500 2208.39 3N_ATTCCT_L007_R1_001.C03LBACXX.fastq.gz, SRR3714700, SRR3714700.sral… SRA
SRX1874097 SRP077046 RNA-Seq SINGLE
GSM2212690: 3R sigmoid male control S69; Homo sapiens; RNA-Seq
Sample: SRS1523943
BioProject: PRJNA326727
BioSample: SAMN05291554
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: sigmoid
gender: male
clinical condition: control
Original files (1)
sigmoid
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714701 42662935 4266293500 2683.48 3R_CCGTCC_L008_R1_001.D2C2AACXX.fastq.gz, SRR3714701, SRR3714701.sral… SRA
SRX1874098 SRP077046 RNA-Seq SINGLE
GSM2212691: 3S ileum male Crohn's disease S70; Homo sapiens; RNA-Seq
Sample: SRS1523944
BioProject: PRJNA326727
BioSample: SAMN05291555
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: male
clinical condition: Crohn's disease
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714702 32805550 3280555000 2104.52 3S_GAGTGG_L002_R1_001.D078FACXX.fastq.gz, SRR3714702, SRR3714702.sral… SRA
SRX1874099 SRP077046 RNA-Seq SINGLE
GSM2212692: 3W rectum male control S71; Homo sapiens; RNA-Seq
Sample: SRS1523945
BioProject: PRJNA326727
BioSample: SAMN05291466
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rectum
gender: male
clinical condition: control
Original files (1)
rectum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714703 37007449 3700744900 2451.76 3W_TCGAAG_L007_R1_001.D078FACXX.fastq.gz, SRR3714703, SRR3714703.sral… SRA
SRX1874100 SRP077046 RNA-Seq SINGLE
GSM2212693: 4D rightcolon female control S72; Homo sapiens; RNA-Seq
Sample: SRS1523946
BioProject: PRJNA326727
BioSample: SAMN05291467
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: female
clinical condition: control
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714704 44046797 4404679700 3074.14 4D_GCCAAT_L002_R1_001.D2A3AACXX.fastq.gz, SRR3714704, SRR3714704.sral… SRA
SRX1874101 SRP077046 RNA-Seq SINGLE
GSM2212694: 4E_9H ileum female Crohn's disease S73; Homo sapiens; RNA-Seq
Sample: SRS1523948
BioProject: PRJNA326727
BioSample: SAMN05291468
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: female
clinical condition: Crohn's disease
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714705 39818836 3981883600 2513.7 4E_9H_AGTTCC_L003_R1_001.D2EBWACXX.fastq.gz, SRR3714705, SRR3714705.s… SRA
SRX1874102 SRP077046 RNA-Seq SINGLE
GSM2212695: 4F rectum female control S74; Homo sapiens; RNA-Seq
Sample: SRS1523947
BioProject: PRJNA326727
BioSample: SAMN05291469
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rectum
gender: female
clinical condition: control
Original files (1)
rectum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714706 9931884 993188400 703.93 4F_AGTTCC_L003_R1_001.D2A3AACXX.fastq.gz, SRR3714706, SRR3714706.sral… SRA
SRX1874103 SRP077046 RNA-Seq SINGLE
GSM2212696: 4J smallbowel female Crohn's disease S75; Homo sapiens; RNA-Seq
Sample: SRS1523949
BioProject: PRJNA326727
BioSample: SAMN05291470
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: female
clinical condition: Crohn's disease
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714707 37603470 3760347000 2486.44 4J_GGTAGC_L004_R1_001.D2A3AACXX.fastq.gz, SRR3714707, SRR3714707.sral… SRA
SRX1874104 SRP077046 RNA-Seq SINGLE
GSM2212697: 4K leftcolon female Ulcerative Colitis S76; Homo sapiens; RNA-Seq
Sample: SRS1523950
BioProject: PRJNA326727
BioSample: SAMN05291471
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: female
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3714708 11143630 1114363000 782.2 4K_ACTTGA_L006_R1_001.C27U9ACXX.fastq.gz, SRR3714708.sralite, SRR3714… SRA
SRR3714709 49501109 4950110900 3368.45 4K_ACTTGA_L007_R1_001.C2UGHACXX.fastq.gz, SRR3714709, SRR3714709.sral… SRA
SRX1874105 SRP077046 RNA-Seq SINGLE
GSM2212698: 4L ileum female Crohn's disease S77; Homo sapiens; RNA-Seq
Sample: SRS1523951
BioProject: PRJNA326727
BioSample: SAMN05291472
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: female
clinical condition: Crohn's disease
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714710 54236806 5423680600 3636.11 SRR3714710, SRR3714710.sralite, 4L_CTTGTA_L007_R1_001.C27U9ACXX.fastq… SRA
SRX1874106 SRP077046 RNA-Seq SINGLE
GSM2212699: 4M ileum male control S78; Homo sapiens; RNA-Seq
Sample: SRS1523952
BioProject: PRJNA326727
BioSample: SAMN05291473
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: male
clinical condition: control
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714711 29477199 2947719900 1812.62 4M_GTTTCG_L006_R1_001.C03LBACXX.fastq.gz, SRR3714711, SRR3714711.sral… SRA
SRX1874107 SRP077046 RNA-Seq SINGLE
GSM2212700: 4P leftcolon male Ulcerative Colitis S79; Homo sapiens; RNA-Seq
Sample: SRS1523954
BioProject: PRJNA326727
BioSample: SAMN05291474
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714712 30845739 3084573900 1932.86 4P_ACAGTG_L006_R1_001.D2C2AACXX.fastq.gz, SRR3714712, SRR3714712.sral… SRA
SRX1874108 SRP077046 RNA-Seq SINGLE
GSM2212701: 4S smallbowel male Crohn's disease S80; Homo sapiens; RNA-Seq
Sample: SRS1523953
BioProject: PRJNA326727
BioSample: SAMN05291475
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: male
clinical condition: Crohn's disease
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714713 27578515 2757851500 1811.79 4S_GGTAGC_L003_R1_001.D078FACXX.fastq.gz, SRR3714713, SRR3714713.sral… SRA
SRX1874109 SRP077046 RNA-Seq SINGLE
GSM2212702: 4W leftcolon male Crohn's disease S81; Homo sapiens; RNA-Seq
Sample: SRS1523955
BioProject: PRJNA326727
BioSample: SAMN05291476
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: Crohn's disease
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714714 32737119 3273711900 2179.08 4W_TCGGCA_L007_R1_001.D078FACXX.fastq.gz, SRR3714714, SRR3714714.sral… SRA
SRX1874110 SRP077046 RNA-Seq SINGLE
GSM2212703: 4Y ileum female Crohn's disease S82; Homo sapiens; RNA-Seq
Sample: SRS1523957
BioProject: PRJNA326727
BioSample: SAMN05291477
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: female
clinical condition: Crohn's disease
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714715 28380217 2838021700 1643.75 4Y_GATCAG_L006_R1_001.D2EBWACXX.fastq.gz, SRR3714715, SRR3714715.sral… SRA
SRX1874111 SRP077046 RNA-Seq SINGLE
GSM2212704: 5D ileum male Crohn's disease S83; Homo sapiens; RNA-Seq
Sample: SRS1523956
BioProject: PRJNA326727
BioSample: SAMN05291478
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: male
clinical condition: Crohn's disease
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714716 42224008 4222400800 2944.27 5D_CAGATC_L002_R1_001.D2A3AACXX.fastq.gz, SRR3714716, SRR3714716.sral… SRA
SRX1874112 SRP077046 RNA-Seq SINGLE
GSM2212705: 5J leftcolon male Ulcerative Colitis S84; Homo sapiens; RNA-Seq
Sample: SRS1523958
BioProject: PRJNA326727
BioSample: SAMN05291479
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714717 37575393 3757539300 2579.67 5J_ACTGAT_L005_R1_001.D2A3AACXX.fastq.gz, SRR3714717, SRR3714717.sral… SRA
SRX1874113 SRP077046 RNA-Seq SINGLE
GSM2212706: 5M leftcolon male Ulcerative Colitis S85; Homo sapiens; RNA-Seq
Sample: SRS1523959
BioProject: PRJNA326727
BioSample: SAMN05291480
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714718 35206379 3520637900 2175.04 5M_CGTACG_L006_R1_001.C03LBACXX.fastq.gz, SRR3714718, SRR3714718.sral… SRA
SRX1874114 SRP077046 RNA-Seq SINGLE
GSM2212707: 5N ileum female Crohn's disease S86; Homo sapiens; RNA-Seq
Sample: SRS1523960
BioProject: PRJNA326727
BioSample: SAMN05291481
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: female
clinical condition: Crohn's disease
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714719 43838636 4383863600 2753.91 5N_CAAAAG_L007_R1_001.C03LBACXX.fastq.gz, SRR3714719, SRR3714719.sral… SRA
SRX1874115 SRP077046 RNA-Seq SINGLE
GSM2212708: 5P smallbowel male Ulcerative Colitis S87; Homo sapiens; RNA-Seq
Sample: SRS1523961
BioProject: PRJNA326727
BioSample: SAMN05291482
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714720 38057891 3805789100 2332.8 5P_GCCAAT_L007_R1_001.D2C2AACXX.fastq.gz, SRR3714720, SRR3714720.sral… SRA
SRX1874116 SRP077046 RNA-Seq SINGLE
GSM2212709: 5S smallbowel male Crohn's disease S88; Homo sapiens; RNA-Seq
Sample: SRS1523962
BioProject: PRJNA326727
BioSample: SAMN05291483
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: male
clinical condition: Crohn's disease
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714721 48761508 4876150800 3193.85 5S_ACTGAT_L003_R1_001.D078FACXX.fastq.gz, SRR3714721, SRR3714721.sral… SRA
SRX1874117 SRP077046 RNA-Seq SINGLE
GSM2212710: 6E rectosigmoid female control S89; Homo sapiens; RNA-Seq
Sample: SRS1523963
BioProject: PRJNA326727
BioSample: SAMN05291484
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rectosigmoid
gender: female
clinical condition: control
Original files (1)
rectosigmoid
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714722 46929474 4692947400 3269.48 6E_TAGCTT_L002_R1_001.D2A3AACXX.fastq.gz, SRR3714722, SRR3714722.sral… SRA
SRX1874118 SRP077046 RNA-Seq SINGLE
GSM2212711: 6H smallbowel male Crohn's disease S90; Homo sapiens; RNA-Seq
Sample: SRS1523964
BioProject: PRJNA326727
BioSample: SAMN05291485
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: male
clinical condition: Crohn's disease
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714723 47927684 4792768400 3170.28 6H_GTGGCC_L004_R1_001.D2A3AACXX.fastq.gz, SRR3714723, SRR3714723.sral… SRA
SRX1874119 SRP077046 RNA-Seq SINGLE
GSM2212712: 6J leftcolon male Ulcerative Colitis S91; Homo sapiens; RNA-Seq
Sample: SRS1523965
BioProject: PRJNA326727
BioSample: SAMN05291486
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714724 39991879 3999187900 2511.31 6J_CTAGCT_L005_R1_001.D2EBWACXX.fastq.gz, SRR3714724, SRR3714724.sral… SRA
SRX1874120 SRP077046 RNA-Seq SINGLE
GSM2212713: 6N rectum male Ulcerative Colitis S92; Homo sapiens; RNA-Seq
Sample: SRS1523966
BioProject: PRJNA326727
BioSample: SAMN05291487
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rectum
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
rectum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714725 23470680 2347068000 1391.28 6N_GGTAGC_L004_R1_001.D2EBWACXX.fastq.gz, SRR3714725, SRR3714725.sral… SRA
SRX1874121 SRP077046 RNA-Seq SINGLE
GSM2212714: 6O rightcolon_noninflamed male Ulcerative Colitis S93; Homo sapiens; RNA-Seq
Sample: SRS1523967
BioProject: PRJNA326727
BioSample: SAMN05291488
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon_noninflamed
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
rightcolon_noninflamed
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714726 53069464 5306946400 3324.4 6O_ATCACG_L006_R1_001.D2C2AACXX.fastq.gz, SRR3714726, SRR3714726.sral… SRA
SRX1874122 SRP077046 RNA-Seq SINGLE
GSM2212715: 6P leftcolon female Ulcerative Colitis S94; Homo sapiens; RNA-Seq
Sample: SRS1523968
BioProject: PRJNA326727
BioSample: SAMN05291489
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: female
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714727 33873151 3387315100 2073.3 6P_CAGATC_L007_R1_001.D2C2AACXX.fastq.gz, SRR3714727, SRR3714727.sral… SRA
SRX1874123 SRP077046 RNA-Seq SINGLE
GSM2212716: 6R colon male control S95; Homo sapiens; RNA-Seq
Sample: SRS1523969
BioProject: PRJNA326727
BioSample: SAMN05291490
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: colon
gender: male
clinical condition: control
Original files (1)
colon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714728 30268518 3026851800 1891.93 6R_GTAGAG_L008_R1_001.D2C2AACXX.fastq.gz, SRR3714728, SRR3714728.sral… SRA
SRX1874124 SRP077046 RNA-Seq SINGLE
GSM2212717: 6S leftcolon male Crohn's disease S96; Homo sapiens; RNA-Seq
Sample: SRS1523970
BioProject: PRJNA326727
BioSample: SAMN05291491
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: Crohn's disease
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714729 8830749 883074900 562.39 6S_ATGAGC_L005_R1_001.D078FACXX.fastq.gz, SRR3714729, SRR3714729.sral… SRA
SRX1874125 SRP077046 RNA-Seq SINGLE
GSM2212718: 6T sigmoid female control S97; Homo sapiens; RNA-Seq
Sample: SRS1523971
BioProject: PRJNA326727
BioSample: SAMN05291492
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: sigmoid
gender: female
clinical condition: control
Original files (1)
sigmoid
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714730 41903461 4190346100 2759.36 6T_CATTTT_L004_R1_001.D078FACXX.fastq.gz, SRR3714730, SRR3714730.sral… SRA
SRX1874126 SRP077046 RNA-Seq SINGLE
GSM2212719: 6U ileum male Crohn's disease S98; Homo sapiens; RNA-Seq
Sample: SRS1523972
BioProject: PRJNA326727
BioSample: SAMN05291493
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: male
clinical condition: Crohn's disease
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714731 37401567 3740156700 2201.0 6U_CAACTA_L004_R1_001.D2EBWACXX.fastq.gz, SRR3714731, SRR3714731.sral… SRA
SRX1874127 SRP077046 RNA-Seq SINGLE
GSM2212720: 6W leftcolon female Crohn's disease S99; Homo sapiens; RNA-Seq
Sample: SRS1523973
BioProject: PRJNA326727
BioSample: SAMN05291494
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: female
clinical condition: Crohn's disease
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714732 65047278 6504727800 4315.68 6W_ATCACG_L007_R1_001.D078FACXX.fastq.gz, SRR3714732, SRR3714732.sral… SRA
SRX1874128 SRP077046 RNA-Seq SINGLE
GSM2212721: 7C rectosigmoid female control S100; Homo sapiens; RNA-Seq
Sample: SRS1523974
BioProject: PRJNA326727
BioSample: SAMN05291495
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rectosigmoid
gender: female
clinical condition: control
Original files (1)
rectosigmoid
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714733 65981068 6598106800 4594.05 7C_TGACCA_L001_R1_001.D2A3AACXX.fastq.gz, SRR3714733, SRR3714733.sral… SRA
SRX1874129 SRP077046 RNA-Seq SINGLE
GSM2212722: 7E ileum female Crohn's disease S101; Homo sapiens; RNA-Seq
Sample: SRS1523975
BioProject: PRJNA326727
BioSample: SAMN05291502
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: female
clinical condition: Crohn's disease
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714734 59159584 5915958400 4131.78 7E_GGCTAC_L002_R1_001.D2A3AACXX.fastq.gz, SRR3714734, SRR3714734.sral… SRA
SRX1874130 SRP077046 RNA-Seq SINGLE
GSM2212723: 7H leftcolon male Ulcerative Colitis S102; Homo sapiens; RNA-Seq
Sample: SRS1523976
BioProject: PRJNA326727
BioSample: SAMN05291503
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714735 57451128 5745112800 3932.2 7H_ATTCCT_L005_R1_001.D2A3AACXX.fastq.gz, SRR3714735, SRR3714735.sral… SRA
SRX1874131 SRP077046 RNA-Seq SINGLE
GSM2212724: 7L leftcolon male Crohn's disease S103; Homo sapiens; RNA-Seq
Sample: SRS1523977
BioProject: PRJNA326727
BioSample: SAMN05291496
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: Crohn's disease
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714736 30833331 3083333100 2071.17 7L_AGTCAA_L007_R1_001.C27U9ACXX.fastq.gz, SRR3714736, SRR3714736.sral… SRA
SRX1874132 SRP077046 RNA-Seq SINGLE
GSM2212725: 7M leftcolon male Ulcerative Colitis S104; Homo sapiens; RNA-Seq
Sample: SRS1523978
BioProject: PRJNA326727
BioSample: SAMN05291497
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714737 28078869 2807886900 1736.24 7M_GAGTGG_L006_R1_001.C03LBACXX.fastq.gz, SRR3714737, SRR3714737.sral… SRA
SRX1874133 SRP077046 RNA-Seq SINGLE
GSM2212726: 7R rightcolon female control S105; Homo sapiens; RNA-Seq
Sample: SRS1523980
BioProject: PRJNA326727
BioSample: SAMN05291498
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: female
clinical condition: control
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714738 43755217 4375521700 2576.9 7R_CAAAAG_L004_R1_001.D2EBWACXX.fastq.gz, SRR3714738, SRR3714738.sral… SRA
SRX1874134 SRP077046 RNA-Seq SINGLE
GSM2212727: 7S leftcolon female control S106; Homo sapiens; RNA-Seq
Sample: SRS1523979
BioProject: PRJNA326727
BioSample: SAMN05291499
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: female
clinical condition: control
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714739 40110409 4011040900 2627.88 7S_ATTCCT_L003_R1_001.D078FACXX.fastq.gz, SRR3714739, SRR3714739.sral… SRA
SRX1874135 SRP077046 RNA-Seq SINGLE
GSM2212728: 7T leftcolon female Ulcerative Colitis S107; Homo sapiens; RNA-Seq
Sample: SRS1523981
BioProject: PRJNA326727
BioSample: SAMN05291500
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: female
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714740 47930114 4793011400 3049.03 7T_CCAACA_L005_R1_001.D078FACXX.fastq.gz, SRR3714740, SRR3714740.sral… SRA
SRX1874136 SRP077046 RNA-Seq SINGLE
GSM2212729: 7 transversecolon male control S108; Homo sapiens; RNA-Seq
Sample: SRS1523982
BioProject: PRJNA326727
BioSample: SAMN05291501
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: transversecolon
gender: male
clinical condition: control
Original files (1)
transversecolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714741 41951251 4195125100 2929.24 7_ATCACG_L001_R1_001.D2A3AACXX.fastq.gz, SRR3714741, SRR3714741.srali… SRA
SRX1874137 SRP077046 RNA-Seq SINGLE
GSM2212730: 7U rectosigmoid female control S109; Homo sapiens; RNA-Seq
Sample: SRS1523983
BioProject: PRJNA326727
BioSample: SAMN05291504
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rectosigmoid
gender: female
clinical condition: control
Original files (1)
rectosigmoid
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714742 42768804 4276880400 2717.49 7U_CTATAC_L005_R1_001.D078FACXX.fastq.gz, SRR3714742, SRR3714742.sral… SRA
SRX1874138 SRP077046 RNA-Seq SINGLE
GSM2212731: 7V rectosigmoid female control S110; Homo sapiens; RNA-Seq
Sample: SRS1523984
BioProject: PRJNA326727
BioSample: SAMN05291505
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rectosigmoid
gender: female
clinical condition: control
Original files (1)
rectosigmoid
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714743 48384975 4838497500 3056.28 7V_CAGGCG_L005_R1_001.D2EBWACXX.fastq.gz, SRR3714743, SRR3714743.sral… SRA
SRX1874139 SRP077046 RNA-Seq SINGLE
GSM2212732: 7W ileum male Crohn's disease S111; Homo sapiens; RNA-Seq
Sample: SRS1523985
BioProject: PRJNA326727
BioSample: SAMN05291506
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: male
clinical condition: Crohn's disease
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714744 34007379 3400737900 2259.11 7W_CGATGT_L007_R1_001.D078FACXX.fastq.gz, SRR3714744, SRR3714744.sral… SRA
SRX1874140 SRP077046 RNA-Seq SINGLE
GSM2212733: 8C rightcolon female control S112; Homo sapiens; RNA-Seq
Sample: SRS1523986
BioProject: PRJNA326727
BioSample: SAMN05291507
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: female
clinical condition: control
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714745 23549141 2354914100 1402.2 8C_CTTGTA_L004_R1_001.D2EBWACXX.fastq.gz, SRR3714745, SRR3714745.sral… SRA
SRX1874141 SRP077046 RNA-Seq SINGLE
GSM2212734: 8E smallbowel male Crohn's disease S113; Homo sapiens; RNA-Seq
Sample: SRS1523987
BioProject: PRJNA326727
BioSample: SAMN05291508
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: male
clinical condition: Crohn's disease
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714746 13625458 1362545800 968.52 8E_CTTGTA_L003_R1_001.D2A3AACXX.fastq.gz, SRR3714746, SRR3714746.sral… SRA
SRX1874142 SRP077046 RNA-Seq SINGLE
GSM2212735: 8F ileum male Crohn's disease S114; Homo sapiens; RNA-Seq
Sample: SRS1523988
BioProject: PRJNA326727
BioSample: SAMN05291509
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: male
clinical condition: Crohn's disease
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714747 47519435 4751943500 2976.84 8F_CACGAT_L005_R1_001.D2EBWACXX.fastq.gz, SRR3714747, SRR3714747.sral… SRA
SRX1874143 SRP077046 RNA-Seq SINGLE
GSM2212736: 8I leftcolon female Ulcerative Colitis S115; Homo sapiens; RNA-Seq
Sample: SRS1523989
BioProject: PRJNA326727
BioSample: SAMN05291510
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: female
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714748 49155606 4915560600 3368.82 8I_CACCGG_L005_R1_001.D2A3AACXX.fastq.gz, SRR3714748, SRR3714748.sral… SRA
SRX1874144 SRP077046 RNA-Seq SINGLE
GSM2212737: 8J ileum male Crohn's disease S116; Homo sapiens; RNA-Seq
Sample: SRS1523990
BioProject: PRJNA326727
BioSample: SAMN05291511
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: male
clinical condition: Crohn's disease
Original files (1)
ileum
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR3714749 10537660 1053766000 739.55 8J_GCCAAT_L006_R1_001.C27U9ACXX.fastq.gz, SRR3714749, SRR3714749.sral… SRA
SRR3714750 46105551 4610555100 3140.01 8J_GCCAAT_L007_R1_001.C2UGHACXX.fastq.gz, SRR3714750, SRR3714750.sral… SRA
SRX1874145 SRP077046 RNA-Seq SINGLE
GSM2212738: 8K ileum female Crohn's disease S117; Homo sapiens; RNA-Seq
Sample: SRS1523991
BioProject: PRJNA326727
BioSample: SAMN05291512
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: female
clinical condition: Crohn's disease
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714751 22114608 2211460800 1545.01 8K_GATCAG_L006_R1_001.C27U9ACXX.fastq.gz, SRR3714751, SRR3714751.sral… SRA
SRX1874146 SRP077046 RNA-Seq SINGLE
GSM2212739: 8L smallbowel female control S118; Homo sapiens; RNA-Seq
Sample: SRS1523992
BioProject: PRJNA326727
BioSample: SAMN05291513
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: female
clinical condition: control
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714752 26925030 2692503000 1805.06 8L_AGTTCC_L007_R1_001.C27U9ACXX.fastq.gz, SRR3714752, SRR3714752.sral… SRA
SRX1874147 SRP077046 RNA-Seq SINGLE
GSM2212740: 8M leftcolon male Ulcerative Colitis S119; Homo sapiens; RNA-Seq
Sample: SRS1523993
BioProject: PRJNA326727
BioSample: SAMN05291514
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714753 23671600 2367160000 1363.22 SRR3714753, SRR3714753.sralite, 8M_GAGTGG_L006_R1_001.D2EBWACXX.fastq… SRA
SRX1874148 SRP077046 RNA-Seq SINGLE
GSM2212741: 8Q rightcolon female control S120; Homo sapiens; RNA-Seq
Sample: SRS1523994
BioProject: PRJNA326727
BioSample: SAMN05291515
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: female
clinical condition: control
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714754 38639052 3863905200 2478.8 SRR3714754, SRR3714754.sralite, 8Q_GGCTAC_L002_R1_001.D078FACXX.fastq… SRA
SRX1874149 SRP077046 RNA-Seq SINGLE
GSM2212742: 8S smallbowel male Crohn's disease S121; Homo sapiens; RNA-Seq
Sample: SRS1523995
BioProject: PRJNA326727
BioSample: SAMN05291516
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: male
clinical condition: Crohn's disease
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714755 34957058 3495705800 2284.25 8S_CAAAAG_L003_R1_001.D078FACXX.fastq.gz, SRR3714755, SRR3714755.sral… SRA
SRX1874150 SRP077046 RNA-Seq SINGLE
GSM2212743: 8 ileum male Crohn's disease S122; Homo sapiens; RNA-Seq
Sample: SRS1523996
BioProject: PRJNA326727
BioSample: SAMN05291517
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum
gender: male
clinical condition: Crohn's disease
Original files (1)
ileum
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714756 25720448 2572044800 1797.3 8_CGATGT_L001_R1_001.D2A3AACXX.fastq.gz, SRR3714756, SRR3714756.srali… SRA
SRX1874151 SRP077046 RNA-Seq SINGLE
GSM2212744: 8U leftcolon female Ulcerative Colitis S123; Homo sapiens; RNA-Seq
Sample: SRS1523997
BioProject: PRJNA326727
BioSample: SAMN05291518
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: female
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714757 37844045 3784404500 2467.13 8U_CTCAGA_L001_R1_001.D078FACXX.fastq.gz, SRR3714757, SRR3714757.sral… SRA
SRX1874152 SRP077046 RNA-Seq SINGLE
GSM2212745: 8V leftcolon male control S124; Homo sapiens; RNA-Seq
Sample: SRS1523998
BioProject: PRJNA326727
BioSample: SAMN05291519
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: control
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714758 41613424 4161342400 2741.81 8V_TATAAT_L006_R1_001.D078FACXX.fastq.gz, SRR3714758, SRR3714758.sral… SRA
SRX1874153 SRP077046 RNA-Seq SINGLE
GSM2212746: 8W transversecolon female control S125; Homo sapiens; RNA-Seq
Sample: SRS1523999
BioProject: PRJNA326727
BioSample: SAMN05291520
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: transversecolon
gender: female
clinical condition: control
Original files (1)
transversecolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714759 81363078 8136307800 5350.37 8W_TTAGGC_L002_R1_001.D2EBWACXX.fastq.gz, SRR3714759, SRR3714759.sral… SRA
SRX1874154 SRP077046 RNA-Seq SINGLE
GSM2212747: 9F transversecolon female control S126; Homo sapiens; RNA-Seq
Sample: SRS1524000
BioProject: PRJNA326727
BioSample: SAMN05291521
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: transversecolon
gender: female
clinical condition: control
Original files (1)
transversecolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714760 25640570 2564057000 1813.87 9F_ATGTCA_L003_R1_001.D2A3AACXX.fastq.gz, SRR3714760, SRR3714760.sral… SRA
SRX1874155 SRP077046 RNA-Seq SINGLE
GSM2212748: 9I_6I leftcolon male Ulcerative Colitis S127; Homo sapiens; RNA-Seq
Sample: SRS1524001
BioProject: PRJNA326727
BioSample: SAMN05291522
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: Ulcerative Colitis
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714761 38887812 3888781200 2518.02 9I_6I_ATCACG_L006_R1_001.D2A3AACXX.fastq.gz, SRR3714761, SRR3714761.s… SRA
SRX1874156 SRP077046 RNA-Seq SINGLE
GSM2212749: 9L sigmoid male control S128; Homo sapiens; RNA-Seq
Sample: SRS1524003
BioProject: PRJNA326727
BioSample: SAMN05291523
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: sigmoid
gender: male
clinical condition: control
Original files (1)
sigmoid
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714762 28711221 2871122100 1926.25 9L_ATGTCA_L007_R1_001.C27U9ACXX.fastq.gz, SRR3714762, SRR3714762.sral… SRA
SRX1874157 SRP077046 RNA-Seq SINGLE
GSM2212750: 9N ileum_slightlyinflamed female Ulcerative Colitis S129; Homo sapiens; RNA-Seq
Sample: SRS1524002
BioProject: PRJNA326727
BioSample: SAMN05291524
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: ileum_slightlyinflamed
gender: female
clinical condition: Ulcerative Colitis
Original files (1)
ileum_slightlyinflamed
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714763 48853140 4885314000 3083.28 9N_CAACTA_L007_R1_001.C03LBACXX.fastq.gz, SRR3714763, SRR3714763.sral… SRA
SRX1874158 SRP077046 RNA-Seq SINGLE
GSM2212751: 9O leftcolon male Crohn's disease S130; Homo sapiens; RNA-Seq
Sample: SRS1524004
BioProject: PRJNA326727
BioSample: SAMN05291525
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: leftcolon
gender: male
clinical condition: Crohn's disease
Original files (1)
leftcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714764 31755813 3175581300 1995.05 9O_CGATGT_L006_R1_001.D2C2AACXX.fastq.gz, SRR3714764, SRR3714764.sral… SRA
SRX1874159 SRP077046 RNA-Seq SINGLE
GSM2212752: 9Q sigmoid male Crohn's disease S131; Homo sapiens; RNA-Seq
Sample: SRS1524005
BioProject: PRJNA326727
BioSample: SAMN05291566
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: sigmoid
gender: male
clinical condition: Crohn's disease
Original files (1)
sigmoid
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714765 38418181 3841818100 2461.11 9Q_CTTGTA_L002_R1_001.D078FACXX.fastq.gz, SRR3714765, SRR3714765.sral… SRA
SRX1874160 SRP077046 RNA-Seq SINGLE
GSM2212753: 9R rightcolon female control S132; Homo sapiens; RNA-Seq
Sample: SRS1524006
BioProject: PRJNA326727
BioSample: SAMN05291567
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: rightcolon
gender: female
clinical condition: control
Original files (1)
rightcolon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714766 32435452 3243545200 2039.19 9R_GTCCGC_L008_R1_001.D2C2AACXX.fastq.gz, SRR3714766, SRR3714766.sral… SRA
SRX1874161 SRP077046 RNA-Seq SINGLE
GSM2212754: 9S smallbowel male control S133; Homo sapiens; RNA-Seq
Sample: SRS1524007
BioProject: PRJNA326727
BioSample: SAMN05291568
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: smallbowel
gender: male
clinical condition: control
Original files (1)
smallbowel
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714767 39170279 3917027900 2563.59 9S_CAACTA_L003_R1_001.D078FACXX.fastq.gz, SRR3714767, SRR3714767.sral… SRA
SRX1874162 SRP077046 RNA-Seq SINGLE
GSM2212755: 9V colon female control S134; Homo sapiens; RNA-Seq
Sample: SRS1524008
BioProject: PRJNA326727
BioSample: SAMN05291569
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: colon
gender: female
clinical condition: control
Original files (1)
colon
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR3714768 39240136 3924013600 2586.9 9V_TCATTC_L006_R1_001.D078FACXX.fastq.gz, SRR3714768, SRR3714768.sral… SRA

Linked Publications (1)

RNA binding protein DDX5 directs tuft cell specification and function to regulate microbial repertoire and disease susceptibility in the intestine.
Gut · 2022

Data Files (138)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— 10E_AGTCAA_L003_R1_001.D2A3AACXX.fastq.gz RNA-Seq 1.6 GB link
— 10F_CCGTCC_L003_R1_001.D2A3AACXX.fastq.gz RNA-Seq 1.4 GB link
— 10G_GTTTCG_L004_R1_001.D2A3AACXX.fastq.gz RNA-Seq 1.9 GB link
— 10H_CAAAAG_L005_R1_001.D2A3AACXX.fastq.gz RNA-Seq 1.7 GB link
— 10J_GTGGCC_L006_R1_001.D2EBWACXX.fastq.gz RNA-Seq 1.8 GB link
— 10K_TAGCTT_L006_R1_001.C27U9ACXX.fastq.gz RNA-Seq 2.1 GB link
— 10L_CCGTCC_L005_R1_001.C03LBACXX.fastq.gz RNA-Seq 2.2 GB link
— 10M_GGTAGC_L006_R1_001.C03LBACXX.fastq.gz RNA-Seq 2.2 GB link
— 10O_ACTGAT_L003_R1_001.D2EBWACXX.fastq.gz RNA-Seq 2.7 GB link
— 10P_ACTTGA_L007_R1_001.D2C2AACXX.fastq.gz RNA-Seq 2.4 GB link
— 10Q_AGTCAA_L001_R1_001.D078FACXX.fastq.gz RNA-Seq 2.6 GB link
— 10R_GTGAAA_L008_R1_001.D2C2AACXX.fastq.gz RNA-Seq 2.6 GB link
— 10S_CACCGG_L004_R1_001.D078FACXX.fastq.gz RNA-Seq 2.4 GB link
— 10U_GACGAC_L006_R1_001.D078FACXX.fastq.gz RNA-Seq 3.1 GB link
— 10V_TCCCGA_L007_R1_001.D078FACXX.fastq.gz RNA-Seq 2.0 GB link
— 10W_TGACCA_L001_R1_001.D2EBWACXX.fastq.gz RNA-Seq 2.4 GB link
— 11B_AGTCAA_L003_R1_001.D2EBWACXX.fastq.gz RNA-Seq 2.4 GB link
— 11E_ATGTCA_L003_R1_001.D2EBWACXX.fastq.gz RNA-Seq 2.5 GB link
— 11I_CGATGT_L006_R1_001.D2A3AACXX.fastq.gz RNA-Seq 2.4 GB link
— 11L_CGTACG_L006_R1_001.D2EBWACXX.fastq.gz RNA-Seq 1.5 GB link
— 11P_GATCAG_L007_R1_001.D2C2AACXX.fastq.gz RNA-Seq 1.9 GB link
— 11R_GTGGCC_L008_R1_001.D2C2AACXX.fastq.gz RNA-Seq 2.0 GB link
— 11S_CACGAT_L004_R1_001.D078FACXX.fastq.gz RNA-Seq 2.3 GB link
— 11T_CGGAAT_L005_R1_001.D078FACXX.fastq.gz RNA-Seq 2.3 GB link
— 11U_TAATCG_L006_R1_001.D078FACXX.fastq.gz RNA-Seq 2.2 GB link
— 11U_XXXXXX_L000_R1_001.Multiple.fastq.gz RNA-Seq 8.4 GB link
— 11W_ACAGTG_L001_R1_001.D2EBWACXX.fastq.gz RNA-Seq 3.1 GB link
— 12F_6M_GTAGAG_L004_R1_001.D2A3AACXX.fastq.gz RNA-Seq 3.1 GB link
— 12H_CAACTA_L005_R1_001.D2A3AACXX.fastq.gz RNA-Seq 3.8 GB link
— 12L_GTAGAG_L005_R1_001.C03LBACXX.fastq.gz RNA-Seq 2.3 GB link
— 12M_ACTGAT_L006_R1_001.C03LBACXX.fastq.gz RNA-Seq 2.3 GB link
— 12O_ATGAGC_L005_R1_001.D2EBWACXX.fastq.gz RNA-Seq 812.9 MB link
— 12P_TAGCTT_L007_R1_001.D2C2AACXX.fastq.gz RNA-Seq 2.3 GB link
— 12R_GTTTCG_L002_R1_001.D078FACXX.fastq.gz RNA-Seq 2.1 GB link
— 12S_CACTCA_L004_R1_001.D078FACXX.fastq.gz RNA-Seq 2.1 GB link
— 12T_CTAGCT_L001_R1_001.D078FACXX.fastq.gz RNA-Seq 2.2 GB link
— 12T_XXXXXX_L000_R1_001.Multiple.fastq.gz RNA-Seq 7.8 GB link
— 12U_TACAGC_L006_R1_001.D078FACXX.fastq.gz RNA-Seq 2.4 GB link
— 12W_GCCAAT_L001_R1_001.D2EBWACXX.fastq.gz RNA-Seq 2.6 GB link
— 1C_GGCTAC_L004_R1_001.D2EBWACXX.fastq.gz RNA-Seq 1.8 GB link
— 1F_CCGTCC_L002_R1_001.D2EBWACXX.fastq.gz RNA-Seq 1.5 GB link
— 1I_TTAGGC_L006_R1_001.D2A3AACXX.fastq.gz RNA-Seq 3.4 GB link
— 1O_CACCGG_L007_R1_001.C03LBACXX.fastq.gz RNA-Seq 2.4 GB link
— 1P_TTAGGC_L006_R1_001.D2C2AACXX.fastq.gz RNA-Seq 2.4 GB link
— 1R_AGTTCC_L002_R1_001.D078FACXX.fastq.gz RNA-Seq 2.3 GB link
— 1T_CAGGCG_L004_R1_001.D078FACXX.fastq.gz RNA-Seq 3.2 GB link
— 1Y_CAGATC_L002_R1_001.D2EBWACXX.fastq.gz RNA-Seq 1.8 GB link
— 2D_ACAGTG_L001_R1_001.D2A3AACXX.fastq.gz RNA-Seq 2.3 GB link
— 2E_GATCAG_L002_R1_001.D2A3AACXX.fastq.gz RNA-Seq 2.0 GB link
— 2F_CACCGG_L002_R1_001.D2EBWACXX.fastq.gz RNA-Seq 2.0 GB link
— 2I_TGACCA_L006_R1_001.D2A3AACXX.fastq.gz RNA-Seq 2.4 GB link
— 2J_GAGTGG_L004_R1_001.D2A3AACXX.fastq.gz RNA-Seq 3.7 GB link
— 2K_GTTTCG_L006_R1_001.D2EBWACXX.fastq.gz RNA-Seq 1.8 GB link
— 2L_GGCTAC_L007_R1_001.C27U9ACXX.fastq.gz RNA-Seq 2.4 GB link
— 2M_GTGAAA_L005_R1_001.C03LBACXX.fastq.gz RNA-Seq 1.9 GB link
— 2N_ATGAGC_L007_R1_001.C03LBACXX.fastq.gz RNA-Seq 925.8 MB link
— 2P_TGACCA_L006_R1_001.D2C2AACXX.fastq.gz RNA-Seq 2.4 GB link
— 2Q_ATTCCT_L005_R1_001.D2EBWACXX.fastq.gz RNA-Seq 3.0 GB link
— 2R_ATGTCA_L001_R1_001.D078FACXX.fastq.gz RNA-Seq 2.3 GB link
— 2S_CGTACG_L005_R1_001.D078FACXX.fastq.gz RNA-Seq 2.3 GB link
— 2T_CATGGC_L001_R1_001.D078FACXX.fastq.gz RNA-Seq 2.4 GB link
— 2Y_ACTTGA_L002_R1_001.D2EBWACXX.fastq.gz RNA-Seq 2.6 GB link
— 3B_TTAGGC_L001_R1_001.D2A3AACXX.fastq.gz RNA-Seq 3.3 GB link
— 3G_GTCCGC_L003_R1_001.D2EBWACXX.fastq.gz RNA-Seq 2.4 GB link
— 3I_ACAGTG_L006_R1_001.D2A3AACXX.fastq.gz RNA-Seq 2.0 GB link
— 3K_CAGATC_L006_R1_001.C27U9ACXX.fastq.gz RNA-Seq 1.1 GB link
— 3M_GTGGCC_L005_R1_001.C03LBACXX.fastq.gz RNA-Seq 2.1 GB link
— 3N_ATTCCT_L007_R1_001.C03LBACXX.fastq.gz RNA-Seq 2.2 GB link
— 3R_CCGTCC_L008_R1_001.D2C2AACXX.fastq.gz RNA-Seq 2.6 GB link
— 3S_GAGTGG_L002_R1_001.D078FACXX.fastq.gz RNA-Seq 2.1 GB link
— 3W_TCGAAG_L007_R1_001.D078FACXX.fastq.gz RNA-Seq 2.4 GB link
— 4D_GCCAAT_L002_R1_001.D2A3AACXX.fastq.gz RNA-Seq 3.0 GB link
— 4E_9H_AGTTCC_L003_R1_001.D2EBWACXX.fastq.gz RNA-Seq 2.5 GB link
— 4F_AGTTCC_L003_R1_001.D2A3AACXX.fastq.gz RNA-Seq 703.9 MB link
— 4J_GGTAGC_L004_R1_001.D2A3AACXX.fastq.gz RNA-Seq 2.4 GB link
— 4K_ACTTGA_L006_R1_001.C27U9ACXX.fastq.gz RNA-Seq 782.2 MB link
— 4K_ACTTGA_L007_R1_001.C2UGHACXX.fastq.gz RNA-Seq 3.3 GB link
— 4M_GTTTCG_L006_R1_001.C03LBACXX.fastq.gz RNA-Seq 1.8 GB link
— 4P_ACAGTG_L006_R1_001.D2C2AACXX.fastq.gz RNA-Seq 1.9 GB link
— 4S_GGTAGC_L003_R1_001.D078FACXX.fastq.gz RNA-Seq 1.8 GB link
— 4W_TCGGCA_L007_R1_001.D078FACXX.fastq.gz RNA-Seq 2.1 GB link
— 4Y_GATCAG_L006_R1_001.D2EBWACXX.fastq.gz RNA-Seq 1.6 GB link
— 5D_CAGATC_L002_R1_001.D2A3AACXX.fastq.gz RNA-Seq 2.9 GB link
— 5J_ACTGAT_L005_R1_001.D2A3AACXX.fastq.gz RNA-Seq 2.5 GB link
— 5M_CGTACG_L006_R1_001.C03LBACXX.fastq.gz RNA-Seq 2.1 GB link
— 5N_CAAAAG_L007_R1_001.C03LBACXX.fastq.gz RNA-Seq 2.7 GB link
— 5P_GCCAAT_L007_R1_001.D2C2AACXX.fastq.gz RNA-Seq 2.3 GB link
— 5S_ACTGAT_L003_R1_001.D078FACXX.fastq.gz RNA-Seq 3.1 GB link
— 6E_TAGCTT_L002_R1_001.D2A3AACXX.fastq.gz RNA-Seq 3.2 GB link
— 6H_GTGGCC_L004_R1_001.D2A3AACXX.fastq.gz RNA-Seq 3.1 GB link
— 6J_CTAGCT_L005_R1_001.D2EBWACXX.fastq.gz RNA-Seq 2.5 GB link
— 6N_GGTAGC_L004_R1_001.D2EBWACXX.fastq.gz RNA-Seq 1.4 GB link
— 6O_ATCACG_L006_R1_001.D2C2AACXX.fastq.gz RNA-Seq 3.2 GB link
— 6P_CAGATC_L007_R1_001.D2C2AACXX.fastq.gz RNA-Seq 2.0 GB link
— 6R_GTAGAG_L008_R1_001.D2C2AACXX.fastq.gz RNA-Seq 1.8 GB link
— 6S_ATGAGC_L005_R1_001.D078FACXX.fastq.gz RNA-Seq 562.4 MB link
— 6T_CATTTT_L004_R1_001.D078FACXX.fastq.gz RNA-Seq 2.7 GB link
— 6U_CAACTA_L004_R1_001.D2EBWACXX.fastq.gz RNA-Seq 2.1 GB link
— 6W_ATCACG_L007_R1_001.D078FACXX.fastq.gz RNA-Seq 4.2 GB link
— 7_ATCACG_L001_R1_001.D2A3AACXX.fastq.gz RNA-Seq 2.9 GB link
— 7C_TGACCA_L001_R1_001.D2A3AACXX.fastq.gz RNA-Seq 4.5 GB link
— 7E_GGCTAC_L002_R1_001.D2A3AACXX.fastq.gz RNA-Seq 4.0 GB link
— 7H_ATTCCT_L005_R1_001.D2A3AACXX.fastq.gz RNA-Seq 3.8 GB link
— 7L_AGTCAA_L007_R1_001.C27U9ACXX.fastq.gz RNA-Seq 2.0 GB link
— 7M_GAGTGG_L006_R1_001.C03LBACXX.fastq.gz RNA-Seq 1.7 GB link
— 7R_CAAAAG_L004_R1_001.D2EBWACXX.fastq.gz RNA-Seq 2.5 GB link
— 7S_ATTCCT_L003_R1_001.D078FACXX.fastq.gz RNA-Seq 2.6 GB link
— 7T_CCAACA_L005_R1_001.D078FACXX.fastq.gz RNA-Seq 3.0 GB link
— 7U_CTATAC_L005_R1_001.D078FACXX.fastq.gz RNA-Seq 2.7 GB link
— 7V_CAGGCG_L005_R1_001.D2EBWACXX.fastq.gz RNA-Seq 3.0 GB link
— 7W_CGATGT_L007_R1_001.D078FACXX.fastq.gz RNA-Seq 2.2 GB link
— 8C_CTTGTA_L004_R1_001.D2EBWACXX.fastq.gz RNA-Seq 1.4 GB link
— 8_CGATGT_L001_R1_001.D2A3AACXX.fastq.gz RNA-Seq 1.8 GB link
— 8E_CTTGTA_L003_R1_001.D2A3AACXX.fastq.gz RNA-Seq 968.5 MB link
— 8F_CACGAT_L005_R1_001.D2EBWACXX.fastq.gz RNA-Seq 2.9 GB link
— 8I_CACCGG_L005_R1_001.D2A3AACXX.fastq.gz RNA-Seq 3.3 GB link
— 8J_GCCAAT_L006_R1_001.C27U9ACXX.fastq.gz RNA-Seq 739.5 MB link
— 8J_GCCAAT_L007_R1_001.C2UGHACXX.fastq.gz RNA-Seq 3.1 GB link
— 8K_GATCAG_L006_R1_001.C27U9ACXX.fastq.gz RNA-Seq 1.5 GB link
— 8L_AGTTCC_L007_R1_001.C27U9ACXX.fastq.gz RNA-Seq 1.8 GB link
— 8S_CAAAAG_L003_R1_001.D078FACXX.fastq.gz RNA-Seq 2.2 GB link
— 8U_CTCAGA_L001_R1_001.D078FACXX.fastq.gz RNA-Seq 2.4 GB link
— 8V_TATAAT_L006_R1_001.D078FACXX.fastq.gz RNA-Seq 2.7 GB link
— 8W_TTAGGC_L002_R1_001.D2EBWACXX.fastq.gz RNA-Seq 5.2 GB link
— 9F_ATGTCA_L003_R1_001.D2A3AACXX.fastq.gz RNA-Seq 1.8 GB link
— 9I_6I_ATCACG_L006_R1_001.D2A3AACXX.fastq.gz RNA-Seq 2.5 GB link
— 9L_ATGTCA_L007_R1_001.C27U9ACXX.fastq.gz RNA-Seq 1.9 GB link
— 9N_CAACTA_L007_R1_001.C03LBACXX.fastq.gz RNA-Seq 3.0 GB link
— 9O_CGATGT_L006_R1_001.D2C2AACXX.fastq.gz RNA-Seq 1.9 GB link
— 9Q_CTTGTA_L002_R1_001.D078FACXX.fastq.gz RNA-Seq 2.4 GB link
— 9R_GTCCGC_L008_R1_001.D2C2AACXX.fastq.gz RNA-Seq 2.0 GB link
— 9S_CAACTA_L003_R1_001.D078FACXX.fastq.gz RNA-Seq 2.5 GB link
— 9V_TCATTC_L006_R1_001.D078FACXX.fastq.gz RNA-Seq 2.5 GB link
— SRR3714671 RNA-Seq 2.6 GB link
— SRR3714674 RNA-Seq 2.1 GB link
— SRR3714710 RNA-Seq 3.6 GB link
— SRR3714753 RNA-Seq 1.3 GB link
— SRR3714754 RNA-Seq 2.4 GB link