#!/usr/bin/env bash # Bulk download script for GSE95237 # Generated from Yeo Lab Publications Database # Total files: 100 OUTDIR="GSE95237" mkdir -p "$OUTDIR" cd "$OUTDIR" # --- GEO supplementary files --- wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_MMemory_H3K4me3.bw" -O "GSE95237_MMemory_H3K4me3.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_MP_ATAC-seq.bw" -O "GSE95237_MP_ATAC-seq.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_MP_H3K27ac.bw" -O "GSE95237_MP_H3K27ac.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_MP_H3K4me1.bw" -O "GSE95237_MP_H3K4me1.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_MP_H3K4me3.bw" -O "GSE95237_MP_H3K4me3.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_MP_Input.bw" -O "GSE95237_MP_Input.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_Memory_ATAC-seq.bw" -O "GSE95237_Memory_ATAC-seq.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_Memory_H3K27ac.bw" -O "GSE95237_Memory_H3K27ac.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_Memory_H3K4me1.bw" -O "GSE95237_Memory_H3K4me1.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_Memory_Input.bw" -O "GSE95237_Memory_Input.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_TE_ATAC-seq.bw" -O "GSE95237_TE_ATAC-seq.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_TE_H3K27ac.bw" -O "GSE95237_TE_H3K27ac.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_TE_H3K4me1.bw" -O "GSE95237_TE_H3K4me1.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_TE_H3K4me3.bw" -O "GSE95237_TE_H3K4me3.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_TE_Input.bw" -O "GSE95237_TE_Input.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_TN_ATAC-seq.bw" -O "GSE95237_TN_ATAC-seq.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_TN_H3K27ac.bw" -O "GSE95237_TN_H3K27ac.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_TN_H3K4me1.bw" -O "GSE95237_TN_H3K4me1.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_TN_H3K4me3.bw" -O "GSE95237_TN_H3K4me3.bw" wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/suppl/GSE95237_TN_Input.bw" -O "GSE95237_TN_Input.bw" # --- SRA run files --- # Tip: use 'fasterq-dump' from SRA Toolkit for FASTQ conversion # with optional renaming to original submitted FASTQ names. # Set to 1 to rename SRR outputs (e.g. SRR_1.fastq.gz -> sample_R1.fastq.gz) RENAME_SRA_TO_ORIGINAL=1 _compress_if_exists() { local stem="$1" if [ -f "${stem}.fastq" ]; then gzip -f "${stem}.fastq" echo "${stem}.fastq.gz" return 0 fi if [ -f "${stem}.fq" ]; then gzip -f "${stem}.fq" echo "${stem}.fq.gz" return 0 fi return 1 } # Option A: Download via SRA Toolkit (recommended) fasterq-dump --split-files "SRR5305074" gz1="$(_compress_if_exists 'SRR5305074_1' || true)" gz2="$(_compress_if_exists 'SRR5305074_2' || true)" gzs="$(_compress_if_exists 'SRR5305074' || true)" fasterq-dump --split-files "SRR5305075" gz1="$(_compress_if_exists 'SRR5305075_1' || true)" gz2="$(_compress_if_exists 'SRR5305075_2' || true)" gzs="$(_compress_if_exists 'SRR5305075' || true)" fasterq-dump --split-files "SRR5305076" gz1="$(_compress_if_exists 'SRR5305076_1' || true)" gz2="$(_compress_if_exists 'SRR5305076_2' || true)" gzs="$(_compress_if_exists 'SRR5305076' || true)" fasterq-dump --split-files "SRR5305077" gz1="$(_compress_if_exists 'SRR5305077_1' || true)" gz2="$(_compress_if_exists 'SRR5305077_2' || true)" gzs="$(_compress_if_exists 'SRR5305077' || true)" fasterq-dump --split-files "SRR5305078" gz1="$(_compress_if_exists 'SRR5305078_1' || true)" gz2="$(_compress_if_exists 'SRR5305078_2' || true)" gzs="$(_compress_if_exists 'SRR5305078' || true)" fasterq-dump --split-files "SRR5305079" gz1="$(_compress_if_exists 'SRR5305079_1' || true)" gz2="$(_compress_if_exists 'SRR5305079_2' || true)" gzs="$(_compress_if_exists 'SRR5305079' || true)" fasterq-dump --split-files "SRR5305080" gz1="$(_compress_if_exists 'SRR5305080_1' || true)" gz2="$(_compress_if_exists 'SRR5305080_2' || true)" gzs="$(_compress_if_exists 'SRR5305080' || true)" fasterq-dump --split-files "SRR5305081" gz1="$(_compress_if_exists 'SRR5305081_1' || true)" gz2="$(_compress_if_exists 'SRR5305081_2' || true)" gzs="$(_compress_if_exists 'SRR5305081' || true)" fasterq-dump --split-files "SRR5305082" gz1="$(_compress_if_exists 'SRR5305082_1' || true)" gz2="$(_compress_if_exists 'SRR5305082_2' || true)" gzs="$(_compress_if_exists 'SRR5305082' || true)" fasterq-dump --split-files "SRR5305083" gz1="$(_compress_if_exists 'SRR5305083_1' || true)" gz2="$(_compress_if_exists 'SRR5305083_2' || true)" gzs="$(_compress_if_exists 'SRR5305083' || true)" fasterq-dump --split-files "SRR5305084" gz1="$(_compress_if_exists 'SRR5305084_1' || true)" gz2="$(_compress_if_exists 'SRR5305084_2' || true)" gzs="$(_compress_if_exists 'SRR5305084' || true)" fasterq-dump --split-files "SRR5305085" gz1="$(_compress_if_exists 'SRR5305085_1' || true)" gz2="$(_compress_if_exists 'SRR5305085_2' || true)" gzs="$(_compress_if_exists 'SRR5305085' || true)" fasterq-dump --split-files "SRR5305086" gz1="$(_compress_if_exists 'SRR5305086_1' || true)" gz2="$(_compress_if_exists 'SRR5305086_2' || true)" gzs="$(_compress_if_exists 'SRR5305086' || true)" fasterq-dump --split-files "SRR5305087" gz1="$(_compress_if_exists 'SRR5305087_1' || true)" gz2="$(_compress_if_exists 'SRR5305087_2' || true)" gzs="$(_compress_if_exists 'SRR5305087' || true)" fasterq-dump --split-files "SRR5305088" gz1="$(_compress_if_exists 'SRR5305088_1' || true)" gz2="$(_compress_if_exists 'SRR5305088_2' || true)" gzs="$(_compress_if_exists 'SRR5305088' || true)" fasterq-dump --split-files "SRR5305089" gz1="$(_compress_if_exists 'SRR5305089_1' || true)" gz2="$(_compress_if_exists 'SRR5305089_2' || true)" gzs="$(_compress_if_exists 'SRR5305089' || true)" fasterq-dump --split-files "SRR5305090" gz1="$(_compress_if_exists 'SRR5305090_1' || true)" gz2="$(_compress_if_exists 'SRR5305090_2' || true)" gzs="$(_compress_if_exists 'SRR5305090' || true)" fasterq-dump --split-files "SRR5305091" gz1="$(_compress_if_exists 'SRR5305091_1' || true)" gz2="$(_compress_if_exists 'SRR5305091_2' || true)" gzs="$(_compress_if_exists 'SRR5305091' || true)" fasterq-dump --split-files "SRR5305092" gz1="$(_compress_if_exists 'SRR5305092_1' || true)" gz2="$(_compress_if_exists 'SRR5305092_2' || true)" gzs="$(_compress_if_exists 'SRR5305092' || true)" fasterq-dump --split-files "SRR5305093" gz1="$(_compress_if_exists 'SRR5305093_1' || true)" gz2="$(_compress_if_exists 'SRR5305093_2' || true)" gzs="$(_compress_if_exists 'SRR5305093' || true)" fasterq-dump --split-files "SRR5305094" gz1="$(_compress_if_exists 'SRR5305094_1' || true)" gz2="$(_compress_if_exists 'SRR5305094_2' || true)" gzs="$(_compress_if_exists 'SRR5305094' || true)" fasterq-dump --split-files "SRR5305095" gz1="$(_compress_if_exists 'SRR5305095_1' || true)" gz2="$(_compress_if_exists 'SRR5305095_2' || true)" gzs="$(_compress_if_exists 'SRR5305095' || true)" fasterq-dump --split-files "SRR5305096" gz1="$(_compress_if_exists 'SRR5305096_1' || true)" gz2="$(_compress_if_exists 'SRR5305096_2' || true)" gzs="$(_compress_if_exists 'SRR5305096' || true)" fasterq-dump --split-files "SRR5305097" gz1="$(_compress_if_exists 'SRR5305097_1' || true)" gz2="$(_compress_if_exists 'SRR5305097_2' || true)" gzs="$(_compress_if_exists 'SRR5305097' || true)" fasterq-dump --split-files "SRR5305098" gz1="$(_compress_if_exists 'SRR5305098_1' || true)" gz2="$(_compress_if_exists 'SRR5305098_2' || true)" gzs="$(_compress_if_exists 'SRR5305098' || true)" fasterq-dump --split-files "SRR5305099" gz1="$(_compress_if_exists 'SRR5305099_1' || true)" gz2="$(_compress_if_exists 'SRR5305099_2' || true)" gzs="$(_compress_if_exists 'SRR5305099' || true)" fasterq-dump --split-files "SRR5305100" gz1="$(_compress_if_exists 'SRR5305100_1' || true)" gz2="$(_compress_if_exists 'SRR5305100_2' || true)" gzs="$(_compress_if_exists 'SRR5305100' || true)" fasterq-dump --split-files "SRR5305101" gz1="$(_compress_if_exists 'SRR5305101_1' || true)" gz2="$(_compress_if_exists 'SRR5305101_2' || true)" gzs="$(_compress_if_exists 'SRR5305101' || true)" fasterq-dump --split-files "SRR5305102" gz1="$(_compress_if_exists 'SRR5305102_1' || true)" gz2="$(_compress_if_exists 'SRR5305102_2' || true)" gzs="$(_compress_if_exists 'SRR5305102' || true)" fasterq-dump --split-files "SRR5305103" gz1="$(_compress_if_exists 'SRR5305103_1' || true)" gz2="$(_compress_if_exists 'SRR5305103_2' || true)" gzs="$(_compress_if_exists 'SRR5305103' || true)" fasterq-dump --split-files "SRR5305104" gz1="$(_compress_if_exists 'SRR5305104_1' || true)" gz2="$(_compress_if_exists 'SRR5305104_2' || true)" gzs="$(_compress_if_exists 'SRR5305104' || true)" fasterq-dump --split-files "SRR5305105" gz1="$(_compress_if_exists 'SRR5305105_1' || true)" gz2="$(_compress_if_exists 'SRR5305105_2' || true)" gzs="$(_compress_if_exists 'SRR5305105' || true)" fasterq-dump --split-files "SRR5305106" gz1="$(_compress_if_exists 'SRR5305106_1' || true)" gz2="$(_compress_if_exists 'SRR5305106_2' || true)" gzs="$(_compress_if_exists 'SRR5305106' || true)" fasterq-dump --split-files "SRR5305107" gz1="$(_compress_if_exists 'SRR5305107_1' || true)" gz2="$(_compress_if_exists 'SRR5305107_2' || true)" gzs="$(_compress_if_exists 'SRR5305107' || true)" fasterq-dump --split-files "SRR5305108" gz1="$(_compress_if_exists 'SRR5305108_1' || true)" gz2="$(_compress_if_exists 'SRR5305108_2' || true)" gzs="$(_compress_if_exists 'SRR5305108' || true)" fasterq-dump --split-files "SRR5305109" gz1="$(_compress_if_exists 'SRR5305109_1' || true)" gz2="$(_compress_if_exists 'SRR5305109_2' || true)" gzs="$(_compress_if_exists 'SRR5305109' || true)" fasterq-dump --split-files "SRR5305110" gz1="$(_compress_if_exists 'SRR5305110_1' || true)" gz2="$(_compress_if_exists 'SRR5305110_2' || true)" gzs="$(_compress_if_exists 'SRR5305110' || true)" fasterq-dump --split-files "SRR5305111" gz1="$(_compress_if_exists 'SRR5305111_1' || true)" gz2="$(_compress_if_exists 'SRR5305111_2' || true)" gzs="$(_compress_if_exists 'SRR5305111' || true)" fasterq-dump --split-files "SRR5305112" gz1="$(_compress_if_exists 'SRR5305112_1' || true)" gz2="$(_compress_if_exists 'SRR5305112_2' || true)" gzs="$(_compress_if_exists 'SRR5305112' || true)" fasterq-dump --split-files "SRR5305113" gz1="$(_compress_if_exists 'SRR5305113_1' || true)" gz2="$(_compress_if_exists 'SRR5305113_2' || true)" gzs="$(_compress_if_exists 'SRR5305113' || true)" # Option B: Direct download (larger .sra files) curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305074/SRR5305074" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305075/SRR5305075" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305076/SRR5305076" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305077/SRR5305077" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305078/SRR5305078" curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/305/SRR5305079.sralite.1" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305080/SRR5305080" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305081/SRR5305081" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305082/SRR5305082" curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/305/SRR5305083.sralite.1" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305084/SRR5305084" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305085/SRR5305085" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305086/SRR5305086" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305087/SRR5305087" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305088/SRR5305088" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305089/SRR5305089" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305090/SRR5305090" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305091/SRR5305091" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305092/SRR5305092" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305093/SRR5305093" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305094/SRR5305094" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305095/SRR5305095" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305096/SRR5305096" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305097/SRR5305097" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305098/SRR5305098" curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/305/SRR5305099.sralite.1" curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/305/SRR5305100.sralite.1" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305101/SRR5305101" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305102/SRR5305102" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305103/SRR5305103" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305104/SRR5305104" curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/305/SRR5305105.sralite.1" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305106/SRR5305106" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305107/SRR5305107" curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/305/SRR5305108.sralite.1" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305109/SRR5305109" curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/305/SRR5305110.sralite.1" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305111/SRR5305111" curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/305/SRR5305112.sralite.1" curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/305/SRR5305113.sralite.1" # --- Additional data files --- curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305082/SRR5305082" curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/305/SRR5305083.sralite.1" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305084/SRR5305084" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305085/SRR5305085" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305086/SRR5305086" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305087/SRR5305087" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305088/SRR5305088" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305089/SRR5305089" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305090/SRR5305090" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305091/SRR5305091" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305092/SRR5305092" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305093/SRR5305093" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305094/SRR5305094" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305095/SRR5305095" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305096/SRR5305096" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305097/SRR5305097" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305098/SRR5305098" curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/305/SRR5305099.sralite.1" curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/305/SRR5305100.sralite.1" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305101/SRR5305101" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305102/SRR5305102" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305103/SRR5305103" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305104/SRR5305104" curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/305/SRR5305105.sralite.1" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305106/SRR5305106" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305107/SRR5305107" curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/305/SRR5305108.sralite.1" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305109/SRR5305109" curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/305/SRR5305110.sralite.1" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305111/SRR5305111" curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/305/SRR5305112.sralite.1" curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/305/SRR5305113.sralite.1" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305074/SRR5305074" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305075/SRR5305075" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305076/SRR5305076" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305077/SRR5305077" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305078/SRR5305078" curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/305/SRR5305079.sralite.1" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305080/SRR5305080" curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR5305081/SRR5305081" echo "Download complete. Files saved to $OUTDIR"