#!/usr/bin/env bash
# Bulk download script for GSE137258
# Generated from Yeo Lab Publications Database
# Total files: 177

OUTDIR="GSE137258"
mkdir -p "$OUTDIR"
cd "$OUTDIR"

# --- GEO supplementary files ---
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_LM2_1-LM2_2.idr.final.bed.gz" -O "GSE137258_LM2_1-LM2_2.idr.final.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_LM2_rep1_rep2.bed.gz" -O "GSE137258_LM2_rep1_rep2.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_MCF7_1-MCF7_2.idr.final.bed.gz" -O "GSE137258_MCF7_1-MCF7_2.idr.final.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_MCF7_rep1_rep2.bed.gz" -O "GSE137258_MCF7_rep1_rep2.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_MDA_1-MDA_2.idr.final.bed.gz" -O "GSE137258_MDA_1-MDA_2.idr.final.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_MDA_rep1_rep2.bed.gz" -O "GSE137258_MDA_rep1_rep2.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_MYC_HMEC_1-MYC_HMEC_2.idr.final.bed.gz" -O "GSE137258_MYC_HMEC_1-MYC_HMEC_2.idr.final.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_MYC_HMEC_MLE_day16.gene_summary.txt.gz" -O "GSE137258_MYC_HMEC_MLE_day16.gene_summary.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_MYC_HMEC_MLE_day8.gene_summary.txt.gz" -O "GSE137258_MYC_HMEC_MLE_day8.gene_summary.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_MYC_HMEC_TAM_1-MYC_HMEC_TAM_2.idr.final.bed.gz" -O "GSE137258_MYC_HMEC_TAM_1-MYC_HMEC_TAM_2.idr.final.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_MYC_HMEC_TAM_rep1_rep2.bed.gz" -O "GSE137258_MYC_HMEC_TAM_rep1_rep2.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_MYC_HMEC_rep1_rep2.bed.gz" -O "GSE137258_MYC_HMEC_rep1_rep2.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_RAW.tar" -O "GSE137258_RAW.tar"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_SKBR3_1-SKBR3_2.idr.final.bed.gz" -O "GSE137258_SKBR3_1-SKBR3_2.idr.final.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_SKBR3_rep1_rep2.bed.gz" -O "GSE137258_SKBR3_rep1_rep2.bed.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_all.countsummary.txt.gz" -O "GSE137258_all.countsummary.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_featurecounts.txt.gz" -O "GSE137258_featurecounts.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_macs2_lm2.bed12.gz" -O "GSE137258_macs2_lm2.bed12.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_macs2_lm2_filtered.bed12.gz" -O "GSE137258_macs2_lm2_filtered.bed12.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_macs2_mcf7.bed12.gz" -O "GSE137258_macs2_mcf7.bed12.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_macs2_mcf7_filtered.bed12.gz" -O "GSE137258_macs2_mcf7_filtered.bed12.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_macs2_mda.bed12.gz" -O "GSE137258_macs2_mda.bed12.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_macs2_mda_filtered.bed12.gz" -O "GSE137258_macs2_mda_filtered.bed12.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_macs2_myc_hmec.bed12.gz" -O "GSE137258_macs2_myc_hmec.bed12.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_macs2_myc_hmec_filtered.bed12.gz" -O "GSE137258_macs2_myc_hmec_filtered.bed12.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_macs2_myc_hmec_tam.bed12.gz" -O "GSE137258_macs2_myc_hmec_tam.bed12.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_macs2_myc_hmec_tam_filtered.bed12.gz" -O "GSE137258_macs2_myc_hmec_tam_filtered.bed12.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_macs2_skbr3.bed12.gz" -O "GSE137258_macs2_skbr3.bed12.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137258/suppl/GSE137258_macs2_skbr3_filtered.bed12.gz" -O "GSE137258_macs2_skbr3_filtered.bed12.gz"

# --- SRA run files ---
# Tip: use 'fasterq-dump' from SRA Toolkit for FASTQ conversion
#      with optional renaming to original submitted FASTQ names.
# Set to 1 to rename SRR outputs (e.g. SRR_1.fastq.gz -> sample_R1.fastq.gz)
RENAME_SRA_TO_ORIGINAL=1

_compress_if_exists() {
  local stem="$1"
  if [ -f "${stem}.fastq" ]; then
    gzip -f "${stem}.fastq"
    echo "${stem}.fastq.gz"
    return 0
  fi
  if [ -f "${stem}.fq" ]; then
    gzip -f "${stem}.fq"
    echo "${stem}.fq.gz"
    return 0
  fi
  return 1
}

# Option A: Download via SRA Toolkit (recommended)
fasterq-dump --split-files "SRR10098214"
gz1="$(_compress_if_exists 'SRR10098214_1' || true)"
gz2="$(_compress_if_exists 'SRR10098214_2' || true)"
gzs="$(_compress_if_exists 'SRR10098214' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Plasmid_1_S23_L001_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098215"
gz1="$(_compress_if_exists 'SRR10098215_1' || true)"
gz2="$(_compress_if_exists 'SRR10098215_2' || true)"
gzs="$(_compress_if_exists 'SRR10098215' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Plasmid_2_S24_L001_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098216"
gz1="$(_compress_if_exists 'SRR10098216_1' || true)"
gz2="$(_compress_if_exists 'SRR10098216_2' || true)"
gzs="$(_compress_if_exists 'SRR10098216' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "T0_rep1_S66_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098217"
gz1="$(_compress_if_exists 'SRR10098217_1' || true)"
gz2="$(_compress_if_exists 'SRR10098217_2' || true)"
gzs="$(_compress_if_exists 'SRR10098217' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "T0_rep2_S67_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098218"
gz1="$(_compress_if_exists 'SRR10098218_1' || true)"
gz2="$(_compress_if_exists 'SRR10098218_2' || true)"
gzs="$(_compress_if_exists 'SRR10098218' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "T8_Unt_rep1_S68_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098219"
gz1="$(_compress_if_exists 'SRR10098219_1' || true)"
gz2="$(_compress_if_exists 'SRR10098219_2' || true)"
gzs="$(_compress_if_exists 'SRR10098219' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "T8_Unt_rep2_S69_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098220"
gz1="$(_compress_if_exists 'SRR10098220_1' || true)"
gz2="$(_compress_if_exists 'SRR10098220_2' || true)"
gzs="$(_compress_if_exists 'SRR10098220' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "T8_Tr_rep1_S70_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098221"
gz1="$(_compress_if_exists 'SRR10098221_1' || true)"
gz2="$(_compress_if_exists 'SRR10098221_2' || true)"
gzs="$(_compress_if_exists 'SRR10098221' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "T8_Tr_rep2_S71_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098222"
gz1="$(_compress_if_exists 'SRR10098222_1' || true)"
gz2="$(_compress_if_exists 'SRR10098222_2' || true)"
gzs="$(_compress_if_exists 'SRR10098222' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "T16_Unt_rep1_S72_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098223"
gz1="$(_compress_if_exists 'SRR10098223_1' || true)"
gz2="$(_compress_if_exists 'SRR10098223_2' || true)"
gzs="$(_compress_if_exists 'SRR10098223' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "T16_Unt_rep2_S73_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098224"
gz1="$(_compress_if_exists 'SRR10098224_1' || true)"
gz2="$(_compress_if_exists 'SRR10098224_2' || true)"
gzs="$(_compress_if_exists 'SRR10098224' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "T16_Tr_rep1_S74_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098225"
gz1="$(_compress_if_exists 'SRR10098225_1' || true)"
gz2="$(_compress_if_exists 'SRR10098225_2' || true)"
gzs="$(_compress_if_exists 'SRR10098225' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "T16_Tr_rep2_S75_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098226"
gz1="$(_compress_if_exists 'SRR10098226_1' || true)"
gz2="$(_compress_if_exists 'SRR10098226_2' || true)"
gzs="$(_compress_if_exists 'SRR10098226' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MYC_HMEC_R1_CLIP_S9_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098227"
gz1="$(_compress_if_exists 'SRR10098227_1' || true)"
gz2="$(_compress_if_exists 'SRR10098227_2' || true)"
gzs="$(_compress_if_exists 'SRR10098227' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MYC_HMEC_R1_SMInput_S1_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098228"
gz1="$(_compress_if_exists 'SRR10098228_1' || true)"
gz2="$(_compress_if_exists 'SRR10098228_2' || true)"
gzs="$(_compress_if_exists 'SRR10098228' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MYC_HMEC_R2_CLIP_S10_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098229"
gz1="$(_compress_if_exists 'SRR10098229_1' || true)"
gz2="$(_compress_if_exists 'SRR10098229_2' || true)"
gzs="$(_compress_if_exists 'SRR10098229' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MYC_HMEC_R2_SMInput_S2_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098230"
gz1="$(_compress_if_exists 'SRR10098230_1' || true)"
gz2="$(_compress_if_exists 'SRR10098230_2' || true)"
gzs="$(_compress_if_exists 'SRR10098230' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MYC_HMEC_TAM_R1_CLIP_S11_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098231"
gz1="$(_compress_if_exists 'SRR10098231_1' || true)"
gz2="$(_compress_if_exists 'SRR10098231_2' || true)"
gzs="$(_compress_if_exists 'SRR10098231' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MYC_HMEC_TAM_R1_SMInput_S3_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098232"
gz1="$(_compress_if_exists 'SRR10098232_1' || true)"
gz2="$(_compress_if_exists 'SRR10098232_2' || true)"
gzs="$(_compress_if_exists 'SRR10098232' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MYC_HMEC_TAM_R2_CLIP_S12_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098233"
gz1="$(_compress_if_exists 'SRR10098233_1' || true)"
gz2="$(_compress_if_exists 'SRR10098233_2' || true)"
gzs="$(_compress_if_exists 'SRR10098233' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MYC_HMEC_TAM_R2_SMInput_S4_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098234"
gz1="$(_compress_if_exists 'SRR10098234_1' || true)"
gz2="$(_compress_if_exists 'SRR10098234_2' || true)"
gzs="$(_compress_if_exists 'SRR10098234' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "LM2_R1_CLIP_S13_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098235"
gz1="$(_compress_if_exists 'SRR10098235_1' || true)"
gz2="$(_compress_if_exists 'SRR10098235_2' || true)"
gzs="$(_compress_if_exists 'SRR10098235' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "LM2_R1_SMInput_S5_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098236"
gz1="$(_compress_if_exists 'SRR10098236_1' || true)"
gz2="$(_compress_if_exists 'SRR10098236_2' || true)"
gzs="$(_compress_if_exists 'SRR10098236' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "LM2_R2_CLIP_S14_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098237"
gz1="$(_compress_if_exists 'SRR10098237_1' || true)"
gz2="$(_compress_if_exists 'SRR10098237_2' || true)"
gzs="$(_compress_if_exists 'SRR10098237' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "LM2_R2_SMInput_S6_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098238"
gz1="$(_compress_if_exists 'SRR10098238_1' || true)"
gz2="$(_compress_if_exists 'SRR10098238_2' || true)"
gzs="$(_compress_if_exists 'SRR10098238' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MDA_R1_CLIP_S69_L004_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098239"
gz1="$(_compress_if_exists 'SRR10098239_1' || true)"
gz2="$(_compress_if_exists 'SRR10098239_2' || true)"
gzs="$(_compress_if_exists 'SRR10098239' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MDA_R1_SMInput_S65_L004_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098240"
gz1="$(_compress_if_exists 'SRR10098240_1' || true)"
gz2="$(_compress_if_exists 'SRR10098240_2' || true)"
gzs="$(_compress_if_exists 'SRR10098240' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MDA_R2_CLIP_S70_L004_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098241"
gz1="$(_compress_if_exists 'SRR10098241_1' || true)"
gz2="$(_compress_if_exists 'SRR10098241_2' || true)"
gzs="$(_compress_if_exists 'SRR10098241' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MDA_R2_SMInput_S66_L004_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098242"
gz1="$(_compress_if_exists 'SRR10098242_1' || true)"
gz2="$(_compress_if_exists 'SRR10098242_2' || true)"
gzs="$(_compress_if_exists 'SRR10098242' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MCF7_R1_CLIP_S71_L004_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098243"
gz1="$(_compress_if_exists 'SRR10098243_1' || true)"
gz2="$(_compress_if_exists 'SRR10098243_2' || true)"
gzs="$(_compress_if_exists 'SRR10098243' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MCF7_R1_SMInput_S67_L004_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098244"
gz1="$(_compress_if_exists 'SRR10098244_1' || true)"
gz2="$(_compress_if_exists 'SRR10098244_2' || true)"
gzs="$(_compress_if_exists 'SRR10098244' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MCF7_R2_CLIP_S72_L004_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098245"
gz1="$(_compress_if_exists 'SRR10098245_1' || true)"
gz2="$(_compress_if_exists 'SRR10098245_2' || true)"
gzs="$(_compress_if_exists 'SRR10098245' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MCF7_R2_SMInput_S68_L004_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098246"
gz1="$(_compress_if_exists 'SRR10098246_1' || true)"
gz2="$(_compress_if_exists 'SRR10098246_2' || true)"
gzs="$(_compress_if_exists 'SRR10098246' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "SKBR3_R1_CLIP_S15_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098247"
gz1="$(_compress_if_exists 'SRR10098247_1' || true)"
gz2="$(_compress_if_exists 'SRR10098247_2' || true)"
gzs="$(_compress_if_exists 'SRR10098247' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "SKBR3_R1_SMInput_S7_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098248"
gz1="$(_compress_if_exists 'SRR10098248_1' || true)"
gz2="$(_compress_if_exists 'SRR10098248_2' || true)"
gzs="$(_compress_if_exists 'SRR10098248' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "SKBR3_R2_CLIP_S16_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098249"
gz1="$(_compress_if_exists 'SRR10098249_1' || true)"
gz2="$(_compress_if_exists 'SRR10098249_2' || true)"
gzs="$(_compress_if_exists 'SRR10098249' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "SKBR3_R2_SMInput_S8_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098250"
gz1="$(_compress_if_exists 'SRR10098250_1' || true)"
gz2="$(_compress_if_exists 'SRR10098250_2' || true)"
gzs="$(_compress_if_exists 'SRR10098250' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "M6A_MYC_HMEC_R1_S7_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098251"
gz1="$(_compress_if_exists 'SRR10098251_1' || true)"
gz2="$(_compress_if_exists 'SRR10098251_2' || true)"
gzs="$(_compress_if_exists 'SRR10098251' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Input_MYC_HMEC_2_S2_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098252"
gz1="$(_compress_if_exists 'SRR10098252_1' || true)"
gz2="$(_compress_if_exists 'SRR10098252_2' || true)"
gzs="$(_compress_if_exists 'SRR10098252' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "M6A_MYC_HMEC_R2_S8_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098253"
gz1="$(_compress_if_exists 'SRR10098253_1' || true)"
gz2="$(_compress_if_exists 'SRR10098253_2' || true)"
gzs="$(_compress_if_exists 'SRR10098253' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Input_MYC_HMEC_R1_S1_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098254"
gz1="$(_compress_if_exists 'SRR10098254_1' || true)"
gz2="$(_compress_if_exists 'SRR10098254_2' || true)"
gzs="$(_compress_if_exists 'SRR10098254' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "M6A_MYC_HMEC_TAM_R1_S9_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098255"
gz1="$(_compress_if_exists 'SRR10098255_1' || true)"
gz2="$(_compress_if_exists 'SRR10098255_2' || true)"
gzs="$(_compress_if_exists 'SRR10098255' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Input_MYC_HMEC_TAM_R1_S3_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098256"
gz1="$(_compress_if_exists 'SRR10098256_1' || true)"
gz2="$(_compress_if_exists 'SRR10098256_2' || true)"
gzs="$(_compress_if_exists 'SRR10098256' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "M6A_MYC_HMEC_TAM_R2_S10_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098257"
gz1="$(_compress_if_exists 'SRR10098257_1' || true)"
gz2="$(_compress_if_exists 'SRR10098257_2' || true)"
gzs="$(_compress_if_exists 'SRR10098257' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Input_MYC_HMEC_TAM_R2_S4_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098258"
gz1="$(_compress_if_exists 'SRR10098258_1' || true)"
gz2="$(_compress_if_exists 'SRR10098258_2' || true)"
gzs="$(_compress_if_exists 'SRR10098258' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "M6A_LM2_R1_S11_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098259"
gz1="$(_compress_if_exists 'SRR10098259_1' || true)"
gz2="$(_compress_if_exists 'SRR10098259_2' || true)"
gzs="$(_compress_if_exists 'SRR10098259' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Input_LM2_R1_S5_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098260"
gz1="$(_compress_if_exists 'SRR10098260_1' || true)"
gz2="$(_compress_if_exists 'SRR10098260_2' || true)"
gzs="$(_compress_if_exists 'SRR10098260' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "M6A_LM2_R2_S12_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098261"
gz1="$(_compress_if_exists 'SRR10098261_1' || true)"
gz2="$(_compress_if_exists 'SRR10098261_2' || true)"
gzs="$(_compress_if_exists 'SRR10098261' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Input_LM2_R2_S6_L005_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098262"
gz1="$(_compress_if_exists 'SRR10098262_1' || true)"
gz2="$(_compress_if_exists 'SRR10098262_2' || true)"
gzs="$(_compress_if_exists 'SRR10098262' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "M6A_MDA_R1_S19_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098263"
gz1="$(_compress_if_exists 'SRR10098263_1' || true)"
gz2="$(_compress_if_exists 'SRR10098263_2' || true)"
gzs="$(_compress_if_exists 'SRR10098263' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Input_MDA_R1_S13_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098264"
gz1="$(_compress_if_exists 'SRR10098264_1' || true)"
gz2="$(_compress_if_exists 'SRR10098264_2' || true)"
gzs="$(_compress_if_exists 'SRR10098264' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "M6A_MDA_R2_S20_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098265"
gz1="$(_compress_if_exists 'SRR10098265_1' || true)"
gz2="$(_compress_if_exists 'SRR10098265_2' || true)"
gzs="$(_compress_if_exists 'SRR10098265' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Input_MDA_R2_S14_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098266"
gz1="$(_compress_if_exists 'SRR10098266_1' || true)"
gz2="$(_compress_if_exists 'SRR10098266_2' || true)"
gzs="$(_compress_if_exists 'SRR10098266' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "M6A_MCF7_R1_S21_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098267"
gz1="$(_compress_if_exists 'SRR10098267_1' || true)"
gz2="$(_compress_if_exists 'SRR10098267_2' || true)"
gzs="$(_compress_if_exists 'SRR10098267' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Input_MCF7_R1_S15_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098268"
gz1="$(_compress_if_exists 'SRR10098268_1' || true)"
gz2="$(_compress_if_exists 'SRR10098268_2' || true)"
gzs="$(_compress_if_exists 'SRR10098268' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "M6A_MCF7_R2_S22_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098269"
gz1="$(_compress_if_exists 'SRR10098269_1' || true)"
gz2="$(_compress_if_exists 'SRR10098269_2' || true)"
gzs="$(_compress_if_exists 'SRR10098269' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Input_MCF7_R2_S16_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098270"
gz1="$(_compress_if_exists 'SRR10098270_1' || true)"
gz2="$(_compress_if_exists 'SRR10098270_2' || true)"
gzs="$(_compress_if_exists 'SRR10098270' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "M6A_SKBR3_R1_S23_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098271"
gz1="$(_compress_if_exists 'SRR10098271_1' || true)"
gz2="$(_compress_if_exists 'SRR10098271_2' || true)"
gzs="$(_compress_if_exists 'SRR10098271' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Input_SKBR3_R1_S17_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098272"
gz1="$(_compress_if_exists 'SRR10098272_1' || true)"
gz2="$(_compress_if_exists 'SRR10098272_2' || true)"
gzs="$(_compress_if_exists 'SRR10098272' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "M6A_SKBR3_R2_S24_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098273"
gz1="$(_compress_if_exists 'SRR10098273_1' || true)"
gz2="$(_compress_if_exists 'SRR10098273_2' || true)"
gzs="$(_compress_if_exists 'SRR10098273' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Input_SKBR3_R2_S18_L006_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098274"
gz1="$(_compress_if_exists 'SRR10098274_1' || true)"
gz2="$(_compress_if_exists 'SRR10098274_2' || true)"
gzs="$(_compress_if_exists 'SRR10098274' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MYC_HMEC_TAM_NTC_R1_S7_L007_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098275"
gz1="$(_compress_if_exists 'SRR10098275_1' || true)"
gz2="$(_compress_if_exists 'SRR10098275_2' || true)"
gzs="$(_compress_if_exists 'SRR10098275' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MYC_HMEC_TAM_NTC_R2_S8_L007_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098276"
gz1="$(_compress_if_exists 'SRR10098276_1' || true)"
gz2="$(_compress_if_exists 'SRR10098276_2' || true)"
gzs="$(_compress_if_exists 'SRR10098276' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MYC_HMEC_TAM_SHY1_R1_S9_L007_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098277"
gz1="$(_compress_if_exists 'SRR10098277_1' || true)"
gz2="$(_compress_if_exists 'SRR10098277_2' || true)"
gzs="$(_compress_if_exists 'SRR10098277' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MYC_HMEC_TAM_SHY1_R2_S10_L007_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098278"
gz1="$(_compress_if_exists 'SRR10098278_1' || true)"
gz2="$(_compress_if_exists 'SRR10098278_2' || true)"
gzs="$(_compress_if_exists 'SRR10098278' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MYC_HMEC_TAM_R1_SHY2_S11_L007_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR10098279"
gz1="$(_compress_if_exists 'SRR10098279_1' || true)"
gz2="$(_compress_if_exists 'SRR10098279_2' || true)"
gzs="$(_compress_if_exists 'SRR10098279' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MYC_HMEC_TAM_R2_SHY2_S12_L007_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12669107"
gz1="$(_compress_if_exists 'SRR12669107_1' || true)"
gz2="$(_compress_if_exists 'SRR12669107_2' || true)"
gzs="$(_compress_if_exists 'SRR12669107' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MYC_HMEC_R1_SHY-1_1_S3_L007_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12669108"
gz1="$(_compress_if_exists 'SRR12669108_1' || true)"
gz2="$(_compress_if_exists 'SRR12669108_2' || true)"
gzs="$(_compress_if_exists 'SRR12669108' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MYC_HMEC_R2_SHY-1_2_S4_L007_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12669109"
gz1="$(_compress_if_exists 'SRR12669109_1' || true)"
gz2="$(_compress_if_exists 'SRR12669109_2' || true)"
gzs="$(_compress_if_exists 'SRR12669109' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MYC_HMEC_R1_SHY-2_1_S5_L007_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12669110"
gz1="$(_compress_if_exists 'SRR12669110_1' || true)"
gz2="$(_compress_if_exists 'SRR12669110_2' || true)"
gzs="$(_compress_if_exists 'SRR12669110' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "MYC_HMEC_R2_SHY-2_2_S6_L007_R1_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12669111"
gz1="$(_compress_if_exists 'SRR12669111_1' || true)"
gz2="$(_compress_if_exists 'SRR12669111_2' || true)"
gzs="$(_compress_if_exists 'SRR12669111' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "WT_Control_STAMP_S1_L004_R1_001.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "WT_Control_STAMP_S1_L004_R2_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12669112"
gz1="$(_compress_if_exists 'SRR12669112_1' || true)"
gz2="$(_compress_if_exists 'SRR12669112_2' || true)"
gzs="$(_compress_if_exists 'SRR12669112' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "WT_RPS2_STAMP_S3_L004_R1_001.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "WT_RPS2_STAMP_S3_L004_R2_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12669113"
gz1="$(_compress_if_exists 'SRR12669113_1' || true)"
gz2="$(_compress_if_exists 'SRR12669113_2' || true)"
gzs="$(_compress_if_exists 'SRR12669113' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "shYTHDF2_Control_STAMP_S8_L004_R1_001.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "shYTHDF2_Control_STAMP_S8_L004_R2_001.fastq.gz"
fi

fasterq-dump --split-files "SRR12669114"
gz1="$(_compress_if_exists 'SRR12669114_1' || true)"
gz2="$(_compress_if_exists 'SRR12669114_2' || true)"
gzs="$(_compress_if_exists 'SRR12669114' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "shYTHDF2_RPS2_STAMP_S6_L004_R1_001.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "shYTHDF2_RPS2_STAMP_S6_L004_R2_001.fastq.gz"
fi


# Option B: Direct download (larger .sra files)
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098214/SRR10098214"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098215/SRR10098215"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098216/SRR10098216"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098217/SRR10098217"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098218/SRR10098218"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098219/SRR10098219"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098220/SRR10098220"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098221/SRR10098221"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098222/SRR10098222"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-1/SRR010/10098/SRR10098223/SRR10098223.lite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098224/SRR10098224"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098225/SRR10098225"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098226/SRR10098226"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098227/SRR10098227"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098228/SRR10098228"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098229/SRR10098229"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098230/SRR10098230"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098231/SRR10098231"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098232/SRR10098232"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098233/SRR10098233"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098234/SRR10098234"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098235/SRR10098235"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098236/SRR10098236"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098237/SRR10098237"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098238/SRR10098238"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098239/SRR10098239"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098240/SRR10098240"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098241/SRR10098241"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098242/SRR10098242"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098243/SRR10098243"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098244/SRR10098244"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-1/SRR010/10098/SRR10098245/SRR10098245.lite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098246/SRR10098246"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-1/SRR010/10098/SRR10098247/SRR10098247.lite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098248/SRR10098248"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098249/SRR10098249"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098250/SRR10098250"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098251/SRR10098251"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098252/SRR10098252"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098253/SRR10098253"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098254/SRR10098254"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098255/SRR10098255"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098256/SRR10098256"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098257/SRR10098257"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098258/SRR10098258"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098259/SRR10098259"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098260/SRR10098260"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098261/SRR10098261"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-1/SRR010/10098/SRR10098262/SRR10098262.lite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098263/SRR10098263"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098264/SRR10098264"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098265/SRR10098265"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098266/SRR10098266"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098267/SRR10098267"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098268/SRR10098268"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098269/SRR10098269"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098270/SRR10098270"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098271/SRR10098271"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098272/SRR10098272"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098273/SRR10098273"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098274/SRR10098274"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098275/SRR10098275"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098276/SRR10098276"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098277/SRR10098277"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098278/SRR10098278"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098279/SRR10098279"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12669107/SRR12669107"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12669108/SRR12669108"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12669109/SRR12669109"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12669110/SRR12669110"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12669111/SRR12669111"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12669112/SRR12669112"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12669113/SRR12669113"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12669114/SRR12669114"

# --- Additional data files ---
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098261/SRR10098261"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098267/SRR10098267"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098269/SRR10098269"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098263/SRR10098263"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098265/SRR10098265"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098251/SRR10098251"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098253/SRR10098253"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098255/SRR10098255"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098257/SRR10098257"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098271/SRR10098271"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098273/SRR10098273"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098234/SRR10098234"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098235/SRR10098235"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098236/SRR10098236"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098237/SRR10098237"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098258/SRR10098258"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098260/SRR10098260"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098266/SRR10098266"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098268/SRR10098268"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-1/SRR010/10098/SRR10098262/SRR10098262.lite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098250/SRR10098250"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098252/SRR10098252"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098254/SRR10098254"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098256/SRR10098256"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098272/SRR10098272"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098242/SRR10098242"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098243/SRR10098243"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098244/SRR10098244"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-1/SRR010/10098/SRR10098245/SRR10098245.lite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098238/SRR10098238"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098239/SRR10098239"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098240/SRR10098240"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098241/SRR10098241"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098226/SRR10098226"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098227/SRR10098227"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098228/SRR10098228"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098229/SRR10098229"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098230/SRR10098230"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098231/SRR10098231"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098232/SRR10098232"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098233/SRR10098233"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098214/SRR10098214"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098215/SRR10098215"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098246/SRR10098246"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-1/SRR010/10098/SRR10098247/SRR10098247.lite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098248/SRR10098248"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098249/SRR10098249"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-1/SRR010/10098/SRR10098223/SRR10098223.lite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098259/SRR10098259"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098264/SRR10098264"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098270/SRR10098270"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098216/SRR10098216"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098217/SRR10098217"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098224/SRR10098224"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098225/SRR10098225"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098222/SRR10098222"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098220/SRR10098220"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098221/SRR10098221"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098218/SRR10098218"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098219/SRR10098219"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12669107/SRR12669107"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12669109/SRR12669109"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12669108/SRR12669108"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12669110/SRR12669110"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098275/SRR10098275"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098279/SRR10098279"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12669113/SRR12669113"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12669114/SRR12669114"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098274/SRR10098274"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098276/SRR10098276"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098277/SRR10098277"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10098278/SRR10098278"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12669111/SRR12669111"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR12669112/SRR12669112"

echo "Download complete. Files saved to $OUTDIR"