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GSE69889

GSE GEO
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Genome-wide Circadian Control of Transcription at Active Enhancers Regulates Insulin Secretion and Diabetes Risk

Organism: Mus musculus
Platform: GPL17021
Samples: 60
Experiment Types:
Expression profiling by high throughput sequencing
Submitted: Jun 15 2015
Last Updated: May 15 2019
Status: Public on Nov 10 2015
Contact: Mark,,Perelis (Northwestern University)

Relations

SubSeries of: GSE70961 BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA287037 SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP059509

Summary

The molecular clock is a transcriptional oscillator present in brain and peripheral cells that coordinates behavior and physiology with the solar cycle. Here we reveal that the clock gates insulin secretion through genome-wide transcriptional control of the pancreatic exocyst across species. Clock transcription factors bind to unique enhancer sites in cycling genes in beta cells that diverge from those in liver, revealing the dynamics of inter-tissue clock control of genomic and physiologic processes important in glucose homeostasis.

Overall Design

Transcriptome profiling in mouse and human islets at serial 4-hour time intervals by polyA RNA-Seq

Analysis (5 steps)

View Data Processing
Processing steps for GSE69889
  1. The data was analyzed by RNA Express v1.0 in BaseSpace
  2. Reads were aligned to mm10 using STAR with the following parameters: readFilesCommand zcat outFilterType BySJout outSJfilterCountUniqueMin -1 2 2 2 outSJfilterCountTotalMin -1 2 2 2 outFilterIntronMotifs RemoveNoncanonical genomeLoad LoadAndKeep
  3. Gene expression levels were computed by a proprietary alogorithm in BaseSpace
  4. Differential expression was performed with DESeq2 using default parameters
  5. Gene cycling data was computed with eJTK_Cycle

Supplementary Files (2)

GSE69889_Cycling_Human_Islet_Genes.txt.gz Download
GSE69889_Cycling_Mouse_Islet_Genes.txt.gz Download
GEO Samples (60)
GSM1711965 GSM1711966 GSM1711967 GSM1711968 GSM1711969 GSM1711970 GSM1711971 GSM1711972 GSM1711973 GSM1711974 GSM1711975 GSM1711976 GSM1711977 GSM1711978 GSM1711979 GSM1711980 GSM1711981 GSM1711982 GSM1711983 GSM1711984 GSM1711985 GSM1711986 GSM1711987 GSM1711988 GSM1711989 GSM1711990 GSM1711991 GSM1711992 GSM1711993 GSM1711994 GSM1711995 GSM1711996 GSM1711997 GSM1711998 GSM1711999 GSM1712000 GSM1712001 GSM1712002 GSM1712003 GSM1712004 GSM1712005 GSM1712006 GSM1712007 GSM1712008 GSM1712009 GSM1712010 GSM1712011 GSM1712012 GSM1712013 GSM1712014 GSM1712015 GSM1712016 GSM1712017 GSM1712018 GSM1712019 GSM1712020 GSM1712021 GSM1712022 GSM1712023 GSM1712024

Dataset Citations (1)

PubMed citation (PMID 26542580)

SRA Experiments (60) and Runs (65)

Total: 159935 MB
SRX1059057 SRP059509 RNA-Seq PAIRED
GSM1711965: Mouse islet polyA RNA-Seq biological replicate 1 CT0; Mus musculus; RNA-Seq
Sample: SRS961430
BioProject: PRJNA287037
BioSample: SAMN03775472
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063284 44829893 12503799388 5926.14 SRR2063284.sralite, SRR2063284, M1CT00_2.fq.gz, M1CT00_1.fq.gz SRA
SRX1059058 SRP059509 RNA-Seq PAIRED
GSM1711966: Mouse islet polyA RNA-Seq biological replicate 1 CT4; Mus musculus; RNA-Seq
Sample: SRS961429
BioProject: PRJNA287037
BioSample: SAMN03775538
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063285 34369796 9550346890 4512.8 M1CT04_1.fq.gz, SRR2063285, SRR2063285.sralite, M1CT04_2.fq.gz SRA
SRX1059059 SRP059509 RNA-Seq PAIRED
GSM1711967: Mouse islet polyA RNA-Seq biological replicate 1 CT8; Mus musculus; RNA-Seq
Sample: SRS961428
BioProject: PRJNA287037
BioSample: SAMN03775540
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063286 35915373 9926992414 4700.28 SRR2063286, SRR2063286.sralite, M1CT08_2.fq.gz, M1CT08_1.fq.gz SRA
SRX1059060 SRP059509 RNA-Seq PAIRED
GSM1711968: Mouse islet polyA RNA-Seq biological replicate 1 CT12; Mus musculus; RNA-Seq
Sample: SRS961425
BioProject: PRJNA287037
BioSample: SAMN03775467
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063287 28093413 7859666572 3727.93 M1CT12_2.fq.gz, SRR2063287, SRR2063287.sralite, M1CT12_1.fq.gz SRA
SRX1059061 SRP059509 RNA-Seq PAIRED
GSM1711969: Mouse islet polyA RNA-Seq biological replicate 1 CT16; Mus musculus; RNA-Seq
Sample: SRS961427
BioProject: PRJNA287037
BioSample: SAMN03775468
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063288 25294936 6986279816 3317.13 SRR2063288, SRR2063288.sralite, M1CT16_2.fq.gz, M1CT16_1.fq.gz SRA
SRX1059062 SRP059509 RNA-Seq PAIRED
GSM1711970: Mouse islet polyA RNA-Seq biological replicate 1 CT020; Mus musculus; RNA-Seq
Sample: SRS961426
BioProject: PRJNA287037
BioSample: SAMN03775470
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063289 21567597 5926118028 2806.78 M1CT20_2.fq.gz, SRR2063289, SRR2063289.sralite, M1CT20_1.fq.gz SRA
SRX1059063 SRP059509 RNA-Seq PAIRED
GSM1711971: Mouse islet polyA RNA-Seq biological replicate 1 CT24; Mus musculus; RNA-Seq
Sample: SRS961424
BioProject: PRJNA287037
BioSample: SAMN03775475
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063290 42404469 11676381709 5551.25 M1CT24_1.fq.gz, M1CT24_2.fq.gz, SRR2063290.sralite, SRR2063290 SRA
SRX1059064 SRP059509 RNA-Seq PAIRED
GSM1711972: Mouse islet polyA RNA-Seq biological replicate 1 CT28; Mus musculus; RNA-Seq
Sample: SRS961423
BioProject: PRJNA287037
BioSample: SAMN03775477
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063291 32005649 8797308220 4177.37 M1CT28_1.fq.gz, M1CT28_2.fq.gz, SRR2063291, SRR2063291.sralite SRA
SRX1059065 SRP059509 RNA-Seq PAIRED
GSM1711973: Mouse islet polyA RNA-Seq biological replicate 1 CT32; Mus musculus; RNA-Seq
Sample: SRS961422
BioProject: PRJNA287037
BioSample: SAMN03775479
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063292 17869953 4922015640 2339.41 SRR2063292, SRR2063292.sralite, M1CT32_2.fq.gz, M1CT32_1.fq.gz SRA
SRX1059066 SRP059509 RNA-Seq PAIRED
GSM1711974: Mouse islet polyA RNA-Seq biological replicate 1 CT36; Mus musculus; RNA-Seq
Sample: SRS961421
BioProject: PRJNA287037
BioSample: SAMN03775481
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063293 24344916 6699706719 3191.79 M1CT36_1.fq.gz, SRR2063293, SRR2063293.sralite, M1CT36_2.fq.gz SRA
SRX1059067 SRP059509 RNA-Seq PAIRED
GSM1711975: Mouse islet polyA RNA-Seq biological replicate 1 CT40; Mus musculus; RNA-Seq
Sample: SRS961420
BioProject: PRJNA287037
BioSample: SAMN03775483
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063294 22149672 6047314974 2884.34 M1CT40_2.fq.gz, SRR2063294, SRR2063294.sralite, M1CT40_1.fq.gz SRA
SRX1059068 SRP059509 RNA-Seq PAIRED
GSM1711976: Mouse islet polyA RNA-Seq biological replicate 1 CT44; Mus musculus; RNA-Seq
Sample: SRS961419
BioProject: PRJNA287037
BioSample: SAMN03775484
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063295 29287888 8058438218 3833.5 SRR2063295, SRR2063295.sralite, M1CT44_2.fq.gz, M1CT44_1.fq.gz SRA
SRX1059069 SRP059509 RNA-Seq PAIRED
GSM1711977: Mouse islet polyA RNA-Seq biological replicate 2 CT0; Mus musculus; RNA-Seq
Sample: SRS961418
BioProject: PRJNA287037
BioSample: SAMN03775486
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063296 28055847 4233181872 1698.67 SRR2063296, SRR2063296.sralite, M2CT00_2.fq.gz, M2CT00_1.fq.gz SRA
SRX1059070 SRP059509 RNA-Seq PAIRED
GSM1711978: Mouse islet polyA RNA-Seq biological replicate 2 CT4; Mus musculus; RNA-Seq
Sample: SRS961417
BioProject: PRJNA287037
BioSample: SAMN03775489
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063297 28733958 4337349933 1739.11 SRR2063297, SRR2063297.sralite, M2CT04_2.fq.gz, M2CT04_1.fq.gz SRA
SRX1059071 SRP059509 RNA-Seq PAIRED
GSM1711979: Mouse islet polyA RNA-Seq biological replicate 2 CT8; Mus musculus; RNA-Seq
Sample: SRS961416
BioProject: PRJNA287037
BioSample: SAMN03775491
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063298 28047849 4234615036 1695.34 SRR2063298, SRR2063298.sralite, M2CT08_2.fq.gz, M2CT08_1.fq.gz SRA
SRX1059072 SRP059509 RNA-Seq PAIRED
GSM1711980: Mouse islet polyA RNA-Seq biological replicate 2 CT12; Mus musculus; RNA-Seq
Sample: SRS961415
BioProject: PRJNA287037
BioSample: SAMN03775530
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063299 16695716 2521334596 1019.52 SRR2063299, SRR2063299.sralite, M2CT12_2.fq.gz, M2CT12_1.fq.gz SRA
SRX1059073 SRP059509 RNA-Seq PAIRED
GSM1711981: Mouse islet polyA RNA-Seq biological replicate 2 CT16; Mus musculus; RNA-Seq
Sample: SRS961414
BioProject: PRJNA287037
BioSample: SAMN03775533
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063300 29594219 4467615624 1798.23 M2CT16_1.fq.gz, SRR2063300, SRR2063300.sralite, M2CT16_2.fq.gz SRA
SRX1059074 SRP059509 RNA-Seq PAIRED
GSM1711982: Mouse islet polyA RNA-Seq biological replicate 2 CT020; Mus musculus; RNA-Seq
Sample: SRS961413
BioProject: PRJNA287037
BioSample: SAMN03775553
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063301 22513371 3398514794 1360.17 M2CT20_1.fq.gz, SRR2063301, SRR2063301.sralite, M2CT20_2.fq.gz SRA
SRX1059075 SRP059509 RNA-Seq PAIRED
GSM1711983: Mouse islet polyA RNA-Seq biological replicate 2 CT24; Mus musculus; RNA-Seq
Sample: SRS961412
BioProject: PRJNA287037
BioSample: SAMN03775537
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063302 29512396 4453853469 1786.38 SRR2063302, SRR2063302.sralite, M2CT24_2.fq.gz, M2CT24_1.fq.gz SRA
SRX1059076 SRP059509 RNA-Seq PAIRED
GSM1711984: Mouse islet polyA RNA-Seq biological replicate 2 CT28; Mus musculus; RNA-Seq
Sample: SRS961411
BioProject: PRJNA287037
BioSample: SAMN03775541
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063303 27878607 4206745560 1685.75 SRR2063303, SRR2063303.sralite, M2CT28_2.fq.gz, M2CT28_1.fq.gz SRA
SRX1059077 SRP059509 RNA-Seq PAIRED
GSM1711985: Mouse islet polyA RNA-Seq biological replicate 2 CT32; Mus musculus; RNA-Seq
Sample: SRS961410
BioProject: PRJNA287037
BioSample: SAMN03775545
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063304 28367981 4280413706 1719.11 M2CT32_1.fq.gz, SRR2063304, SRR2063304.sralite, M2CT32_2.fq.gz SRA
SRX1059078 SRP059509 RNA-Seq PAIRED
GSM1711986: Mouse islet polyA RNA-Seq biological replicate 2 CT36; Mus musculus; RNA-Seq
Sample: SRS961409
BioProject: PRJNA287037
BioSample: SAMN03775548
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063305 28849959 4353981958 1756.75 SRR2063305, M2CT36_2.fq.gz, M2CT36_1.fq.gz, SRR2063305.sralite SRA
SRX1059079 SRP059509 RNA-Seq PAIRED
GSM1711987: Mouse islet polyA RNA-Seq biological replicate 2 CT40; Mus musculus; RNA-Seq
Sample: SRS961408
BioProject: PRJNA287037
BioSample: SAMN03775551
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063306 30296644 4567446302 1842.14 M2CT40_2.fq.gz, SRR2063306.sralite, SRR2063306, M2CT40_1.fq.gz SRA
SRX1059080 SRP059509 RNA-Seq PAIRED
GSM1711988: Mouse islet polyA RNA-Seq biological replicate 2 CT44; Mus musculus; RNA-Seq
Sample: SRS961407
BioProject: PRJNA287037
BioSample: SAMN03775554
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063307 37548701 5667819381 2276.69 M2CT44_1.fq.gz, SRR2063307.sralite, SRR2063307, M2CT44_2.fq.gz SRA
SRX1059081 SRP059509 RNA-Seq PAIRED
GSM1711989: Mouse islet polyA RNA-Seq biological replicate 3 CT0; Mus musculus; RNA-Seq
Sample: SRS961406
BioProject: PRJNA287037
BioSample: SAMN03775560
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063308 33851848 5107768792 2076.86 M3CT00_1.fq.gz, M3CT00_2.fq.gz, SRR2063308.sralite, SRR2063308 SRA
SRX1059082 SRP059509 RNA-Seq PAIRED
GSM1711990: Mouse islet polyA RNA-Seq biological replicate 3 CT4; Mus musculus; RNA-Seq
Sample: SRS961405
BioProject: PRJNA287037
BioSample: SAMN03775563
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063309 40129162 6038121880 2460.85 SRR2063309.sralite, SRR2063309, M3CT04_2.fq.gz, M3CT04_1.fq.gz SRA
SRX1059083 SRP059509 RNA-Seq PAIRED
GSM1711991: Mouse islet polyA RNA-Seq biological replicate 3 CT8; Mus musculus; RNA-Seq
Sample: SRS961404
BioProject: PRJNA287037
BioSample: SAMN03775565
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063310 30218062 4557780805 1852.68 M3CT08_2.fq.gz, SRR2063310, M3CT08_1.fq.gz, SRR2063310.sralite SRA
SRX1059084 SRP059509 RNA-Seq PAIRED
GSM1711992: Mouse islet polyA RNA-Seq biological replicate 3 CT12; Mus musculus; RNA-Seq
Sample: SRS961403
BioProject: PRJNA287037
BioSample: SAMN03775567
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063311 28539005 4308911976 1752.25 M3CT12_2.fq.gz, SRR2063311, SRR2063311.sralite, M3CT12_1.fq.gz SRA
SRX1059085 SRP059509 RNA-Seq PAIRED
GSM1711993: Mouse islet polyA RNA-Seq biological replicate 3 CT16; Mus musculus; RNA-Seq
Sample: SRS961402
BioProject: PRJNA287037
BioSample: SAMN03775516
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063312 31294639 4714633643 1926.02 M3CT16_1.fq.gz, SRR2063312, SRR2063312.sralite, M3CT16_2.fq.gz SRA
SRX1059086 SRP059509 RNA-Seq PAIRED
GSM1711994: Mouse islet polyA RNA-Seq biological replicate 3 CT020; Mus musculus; RNA-Seq
Sample: SRS961401
BioProject: PRJNA287037
BioSample: SAMN03775519
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063313 31748668 4789385318 1947.96 SRR2063313, SRR2063313.sralite, M3CT20_2.fq.gz, M3CT20_1.fq.gz SRA
SRX1059087 SRP059509 RNA-Seq PAIRED
GSM1711995: Mouse islet polyA RNA-Seq biological replicate 3 CT24; Mus musculus; RNA-Seq
Sample: SRS961400
BioProject: PRJNA287037
BioSample: SAMN03775524
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063314 30919604 4666983322 1901.49 SRR2063314, SRR2063314.sralite, M3CT24_2.fq.gz, M3CT24_1.fq.gz SRA
SRX1059088 SRP059509 RNA-Seq PAIRED
GSM1711996: Mouse islet polyA RNA-Seq biological replicate 3 CT28; Mus musculus; RNA-Seq
Sample: SRS961399
BioProject: PRJNA287037
BioSample: SAMN03775557
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063315 30574869 4607668443 1881.87 SRR2063315.sralite, SRR2063315, M3CT28_2.fq.gz, M3CT28_1.fq.gz SRA
SRX1059089 SRP059509 RNA-Seq PAIRED
GSM1711997: Mouse islet polyA RNA-Seq biological replicate 3 CT32; Mus musculus; RNA-Seq
Sample: SRS961398
BioProject: PRJNA287037
BioSample: SAMN03775558
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063316 23845515 3597395283 1466.05 M3CT32_1.fq.gz, SRR2063316.sralite, SRR2063316, M3CT32_2.fq.gz SRA
SRX1059090 SRP059509 RNA-Seq PAIRED
GSM1711998: Mouse islet polyA RNA-Seq biological replicate 3 CT36; Mus musculus; RNA-Seq
Sample: SRS961397
BioProject: PRJNA287037
BioSample: SAMN03775527
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063317 26673548 3986260269 1645.12 SRR2063317, SRR2063317.sralite, M3CT36_2.fq.gz, M3CT36_1.fq.gz SRA
SRX1059091 SRP059509 RNA-Seq PAIRED
GSM1711999: Mouse islet polyA RNA-Seq biological replicate 3 CT40; Mus musculus; RNA-Seq
Sample: SRS961396
BioProject: PRJNA287037
BioSample: SAMN03775568
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063318 31768588 4787216970 1963.61 SRR2063318.sralite, SRR2063318, M3CT40_2.fq.gz, M3CT40_1.fq.gz SRA
SRX1059092 SRP059509 RNA-Seq PAIRED
GSM1712000: Mouse islet polyA RNA-Seq biological replicate 3 CT44; Mus musculus; RNA-Seq
Sample: SRS961395
BioProject: PRJNA287037
BioSample: SAMN03775571
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Mus musculus
Sample attributes
source_name: C57BL/6 wild type mice
cell type: Pancreatic islet cells
strain: C57BL/6
genotype: wild type
Original files (1)
C57BL/6 wild type mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063319 34275946 5153464722 2111.06 M3CT44_1.fq.gz, M3CT44_2.fq.gz, SRR2063319.sralite, SRR2063319 SRA
SRX1059093 SRP059509 RNA-Seq PAIRED
GSM1712001: Mouse Islet polyA RNA-Seq in Bmal1flx/flx islets biological replicate 1; Mus musculus; RNA-Seq
Sample: SRS961394
BioProject: PRJNA287037
BioSample: SAMN03775572
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: Bmal1flx/flx mice
cell type: Pancreatic islet cells
strain: none
genotype: Bmal1flx/flx
Original files (1)
Bmal1flx/flx mice
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR2063320 13974028 2794805600 1622.61 FloxControl01_B_1.fq.gz, FloxControl01_B_2.fq.gz, SRR2063320, SRR2063… SRA
SRR2479474 32044578 6408915600 2512.76 FloxControl01_C_1.fq.gz, SRR2479474.sralite, SRR2479474, FloxControl0… SRA
SRX1059094 SRP059509 RNA-Seq PAIRED
GSM1712002: Mouse Islet polyA RNA-Seq in Bmal1flx/flx islets biological replicate 2; Mus musculus; RNA-Seq
Sample: SRS961393
BioProject: PRJNA287037
BioSample: SAMN03775574
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: Bmal1flx/flx mice
cell type: Pancreatic islet cells
strain: none
genotype: Bmal1flx/flx
Original files (1)
Bmal1flx/flx mice
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR2063321 18173517 3634703400 2130.43 SRR2063321, SRR2063321.sralite, FloxControl02_B_2.fq.gz, FloxControl0… SRA
SRR2479475 35203229 7040645800 2832.24 FloxControl02_C_1.fq.gz, FloxControl02_C_2.fq.gz, SRR2479475.sralite,… SRA
SRX1059095 SRP059509 RNA-Seq PAIRED
GSM1712003: Mouse Islet polyA RNA-Seq in Bmal1flx/flx islets biological replicate 3; Mus musculus; RNA-Seq
Sample: SRS961392
BioProject: PRJNA287037
BioSample: SAMN03775576
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: Bmal1flx/flx mice
cell type: Pancreatic islet cells
strain: none
genotype: Bmal1flx/flx
Original files (1)
Bmal1flx/flx mice
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063322 19641993 3928398600 2291.08 SRR2063322, SRR2063322.sralite, FloxControl03_B_2.fq.gz, FloxControl0… SRA
SRX1059096 SRP059509 RNA-Seq PAIRED
GSM1712004: Mouse Islet polyA RNA-Seq in PdxCre;Bmal1flx/flx islets biological replicate 1; Mus musculus; RNA-Seq
Sample: SRS961391
BioProject: PRJNA287037
BioSample: SAMN03775578
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: PdxCre;Bmal1flx/flx mice
cell type: Pancreatic islet cells
strain: none
genotype: PdxCre;Bmal1flx/flx
Original files (1)
PdxCre;Bmal1flx/flx mice
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR2063323 18885045 3777009000 2220.74 Bmal1KO01_B_1.fq.gz, Bmal1KO01_B_2.fq.gz, SRR2063323, SRR2063323.sral… SRA
SRR2479478 27033475 5406695000 2130.14 Bmal1KO01_C_1.fq.gz, Bmal1KO01_C_2.fq.gz, SRR2479478, SRR2479478.sral… SRA
SRX1059097 SRP059509 RNA-Seq PAIRED
GSM1712005: Mouse Islet polyA RNA-Seq in PdxCre;Bmal1flx/flx islets biological replicate 2; Mus musculus; RNA-Seq
Sample: SRS961390
BioProject: PRJNA287037
BioSample: SAMN03775581
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: PdxCre;Bmal1flx/flx mice
cell type: Pancreatic islet cells
strain: none
genotype: PdxCre;Bmal1flx/flx
Original files (1)
PdxCre;Bmal1flx/flx mice
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR2063324 22710312 4542062400 2657.73 Bmal1KO02_B_1.fq.gz, Bmal1KO02_B_2.fq.gz, SRR2063324.sralite, SRR2063… SRA
SRR2479480 32389646 6477929200 2542.24 Bmal1KO02_C_1.fq.gz, SRR2479480, SRR2479480.sralite, Bmal1KO02_C_2.fq… SRA
SRX1059098 SRP059509 RNA-Seq PAIRED
GSM1712006: Mouse Islet polyA RNA-Seq in PdxCre;Bmal1flx/flx islets biological replicate 3; Mus musculus; RNA-Seq
Sample: SRS961389
BioProject: PRJNA287037
BioSample: SAMN03775582
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: PdxCre;Bmal1flx/flx mice
cell type: Pancreatic islet cells
strain: none
genotype: PdxCre;Bmal1flx/flx
Original files (1)
PdxCre;Bmal1flx/flx mice
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR2063325 19742240 3948448000 2281.92 SRR2063325, SRR2063325.sralite, Bmal1KO03_2_B.fq.gz, Bmal1KO03_1_B.fq… SRA
SRR2479481 33569717 6713943400 2617.91 SRR2479481, SRR2479481.sralite, Bmal1KO03_2_C.fq.gz, Bmal1KO03_1_C.fq… SRA
SRX1059099 SRP059509 RNA-Seq PAIRED
GSM1712007: Human islet polyA RNA-Seq donor 1 CT0; Homo sapiens; RNA-Seq
Sample: SRS961388
BioProject: PRJNA287037
BioSample: SAMN03775584
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Human donor IIDP ID 1114
cell type: Pancreatic islet cells
strain: none
Original files (1)
Human donor IIDP ID 1114
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063326 35665896 5379600483 2276.1 D1CT00_1.fq.gz, SRR2063326, SRR2063326.sralite, D1CT00_2.fq.gz SRA
SRX1059100 SRP059509 RNA-Seq PAIRED
GSM1712008: Human islet polyA RNA-Seq donor 1 CT4; Homo sapiens; RNA-Seq
Sample: SRS961387
BioProject: PRJNA287037
BioSample: SAMN03775586
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Human donor IIDP ID 1114
cell type: Pancreatic islet cells
strain: none
Original files (1)
Human donor IIDP ID 1114
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063327 35761428 5394548636 2279.11 D1CT04_1.fq.gz, SRR2063327, SRR2063327.sralite, D1CT04_2.fq.gz SRA
SRX1059101 SRP059509 RNA-Seq PAIRED
GSM1712009: Human islet polyA RNA-Seq donor 1 CT8; Homo sapiens; RNA-Seq
Sample: SRS961386
BioProject: PRJNA287037
BioSample: SAMN03775693
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Human donor IIDP ID 1114
cell type: Pancreatic islet cells
strain: none
Original files (1)
Human donor IIDP ID 1114
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063328 30763785 4643583168 1971.45 D1CT08_1.fq.gz, SRR2063328, SRR2063328.sralite, D1CT08_2.fq.gz SRA
SRX1059102 SRP059509 RNA-Seq PAIRED
GSM1712010: Human islet polyA RNA-Seq donor 1 CT12; Homo sapiens; RNA-Seq
Sample: SRS961385
BioProject: PRJNA287037
BioSample: SAMN03775589
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Human donor IIDP ID 1114
cell type: Pancreatic islet cells
strain: none
Original files (1)
Human donor IIDP ID 1114
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063329 31351635 4729312142 2005.91 D1CT12_1.fq.gz, D1CT12_2.fq.gz, SRR2063329, SRR2063329.sralite SRA
SRX1059103 SRP059509 RNA-Seq PAIRED
GSM1712011: Human islet polyA RNA-Seq donor 1 CT16; Homo sapiens; RNA-Seq
Sample: SRS961384
BioProject: PRJNA287037
BioSample: SAMN03775592
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Human donor IIDP ID 1114
cell type: Pancreatic islet cells
strain: none
Original files (1)
Human donor IIDP ID 1114
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063330 32069755 4837267262 2048.29 D1CT16_2.fq.gz, SRR2063330, SRR2063330.sralite, D1CT16_1.fq.gz SRA
SRX1059104 SRP059509 RNA-Seq PAIRED
GSM1712012: Human islet polyA RNA-Seq donor 1 CT20; Homo sapiens; RNA-Seq
Sample: SRS961383
BioProject: PRJNA287037
BioSample: SAMN03775595
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Human donor IIDP ID 1114
cell type: Pancreatic islet cells
strain: none
Original files (1)
Human donor IIDP ID 1114
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063331 39185609 5909588388 2502.61 SRR2063331, SRR2063331.sralite, D1CT20_2.fq.gz, D1CT20_1.fq.gz SRA
SRX1059105 SRP059509 RNA-Seq PAIRED
GSM1712013: Human islet polyA RNA-Seq donor 2 CT0; Homo sapiens; RNA-Seq
Sample: SRS961382
BioProject: PRJNA287037
BioSample: SAMN03775596
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Human donor IIDP ID 1121
cell type: Pancreatic islet cells
strain: none
Original files (1)
Human donor IIDP ID 1121
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063332 35350014 5329814764 2263.62 D2CT00_2.fq.gz, SRR2063332, SRR2063332.sralite, D2CT00_1.fq.gz SRA
SRX1059106 SRP059509 RNA-Seq PAIRED
GSM1712014: Human islet polyA RNA-Seq donor 2 CT4; Homo sapiens; RNA-Seq
Sample: SRS961381
BioProject: PRJNA287037
BioSample: SAMN03775694
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Human donor IIDP ID 1121
cell type: Pancreatic islet cells
strain: none
Original files (1)
Human donor IIDP ID 1121
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063333 31799756 4797646773 2035.73 SRR2063333, SRR2063333.sralite, D2CT04_2.fq.gz, D2CT04_1.fq.gz SRA
SRX1059107 SRP059509 RNA-Seq PAIRED
GSM1712015: Human islet polyA RNA-Seq donor 2 CT8; Homo sapiens; RNA-Seq
Sample: SRS961380
BioProject: PRJNA287037
BioSample: SAMN03775600
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Human donor IIDP ID 1121
cell type: Pancreatic islet cells
strain: none
Original files (1)
Human donor IIDP ID 1121
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063334 33331542 5024833928 2130.32 SRR2063334, SRR2063334.sralite, D2CT08_2.fq.gz, D2CT08_1.fq.gz SRA
SRX1059108 SRP059509 RNA-Seq PAIRED
GSM1712016: Human islet polyA RNA-Seq donor 2 CT12; Homo sapiens; RNA-Seq
Sample: SRS961379
BioProject: PRJNA287037
BioSample: SAMN03775602
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Human donor IIDP ID 1121
cell type: Pancreatic islet cells
strain: none
Original files (1)
Human donor IIDP ID 1121
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063335 23409592 3529808475 1504.73 D2CT12_1.fq.gz, SRR2063335, SRR2063335.sralite, D2CT12_2.fq.gz SRA
SRX1059109 SRP059509 RNA-Seq PAIRED
GSM1712017: Human islet polyA RNA-Seq donor 2 CT16; Homo sapiens; RNA-Seq
Sample: SRS961378
BioProject: PRJNA287037
BioSample: SAMN03775604
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Human donor IIDP ID 1121
cell type: Pancreatic islet cells
strain: none
Original files (1)
Human donor IIDP ID 1121
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063336 32785954 4943690939 2102.29 SRR2063336, SRR2063336.sralite, D2CT16_2.fq.gz, D2CT16_1.fq.gz SRA
SRX1059110 SRP059509 RNA-Seq PAIRED
GSM1712018: Human islet polyA RNA-Seq donor 2 CT20; Homo sapiens; RNA-Seq
Sample: SRS961377
BioProject: PRJNA287037
BioSample: SAMN03775606
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Human donor IIDP ID 1121
cell type: Pancreatic islet cells
strain: none
Original files (1)
Human donor IIDP ID 1121
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063337 31130319 4695187198 1992.61 D2CT20_2.fq.gz, SRR2063337, SRR2063337.sralite, D2CT20_1.fq.gz SRA
SRX1059111 SRP059509 RNA-Seq PAIRED
GSM1712019: Human islet polyA RNA-Seq donor 3 CT0; Homo sapiens; RNA-Seq
Sample: SRS961376
BioProject: PRJNA287037
BioSample: SAMN03775608
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Human donor IIDP ID 1174
cell type: Pancreatic islet cells
strain: none
Original files (1)
Human donor IIDP ID 1174
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063338 41482174 6260623011 2992.31 D3CT00_1.fq.gz, SRR2063338, SRR2063338.sralite, D3CT00_2.fq.gz SRA
SRX1059112 SRP059509 RNA-Seq PAIRED
GSM1712020: Human islet polyA RNA-Seq donor 3 CT4; Homo sapiens; RNA-Seq
Sample: SRS961375
BioProject: PRJNA287037
BioSample: SAMN03775610
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Human donor IIDP ID 1174
cell type: Pancreatic islet cells
strain: none
Original files (1)
Human donor IIDP ID 1174
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063339 42882394 6473188134 3067.55 SRR2063339, D3CT04_2.fq.gz, D3CT04_1.fq.gz, SRR2063339.sralite SRA
SRX1059113 SRP059509 RNA-Seq PAIRED
GSM1712021: Human islet polyA RNA-Seq donor 3 CT8; Homo sapiens; RNA-Seq
Sample: SRS961374
BioProject: PRJNA287037
BioSample: SAMN03775612
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Human donor IIDP ID 1174
cell type: Pancreatic islet cells
strain: none
Original files (1)
Human donor IIDP ID 1174
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063340 41457760 6258528953 2963.23 D3CT08_1.fq.gz, SRR2063340, SRR2063340.sralite, D3CT08_2.fq.gz SRA
SRX1059114 SRP059509 RNA-Seq PAIRED
GSM1712022: Human islet polyA RNA-Seq donor 3 CT12; Homo sapiens; RNA-Seq
Sample: SRS961373
BioProject: PRJNA287037
BioSample: SAMN03775614
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Human donor IIDP ID 1174
cell type: Pancreatic islet cells
strain: none
Original files (1)
Human donor IIDP ID 1174
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063341 49278200 7438505190 3540.49 SRR2063341, SRR2063341.sralite, D3CT12_2.fq.gz, D3CT12_1.fq.gz SRA
SRX1059115 SRP059509 RNA-Seq PAIRED
GSM1712023: Human islet polyA RNA-Seq donor 3 CT16; Homo sapiens; RNA-Seq
Sample: SRS961372
BioProject: PRJNA287037
BioSample: SAMN03775615
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Human donor IIDP ID 1174
cell type: Pancreatic islet cells
strain: none
Original files (1)
Human donor IIDP ID 1174
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063342 41065560 6198759579 2937.44 D3CT16_1.fq.gz, D3CT16_2.fq.gz, SRR2063342, SRR2063342.sralite SRA
SRX1059116 SRP059509 RNA-Seq PAIRED
GSM1712024: Human islet polyA RNA-Seq donor 3 CT20; Homo sapiens; RNA-Seq
Sample: SRS961371
BioProject: PRJNA287037
BioSample: SAMN03775616
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Human donor IIDP ID 1174
cell type: Pancreatic islet cells
strain: none
Original files (1)
Human donor IIDP ID 1174
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2063343 44062970 6650354175 3149.4 D3CT20_1.fq.gz, SRR2063343, SRR2063343.sralite, D3CT20_2.fq.gz SRA

Linked Publications (1)

A role for alternative splicing in circadian control of exocytosis and glucose homeostasis.
Genes & development · 2020

Data Files (65)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— Bmal1KO01_B_1.fq.gz RNA-Seq 2.2 GB link
— Bmal1KO01_C_1.fq.gz RNA-Seq 2.1 GB link
— Bmal1KO02_B_1.fq.gz RNA-Seq 2.6 GB link
— Bmal1KO02_C_1.fq.gz RNA-Seq 2.5 GB link
— D1CT00_1.fq.gz RNA-Seq 2.2 GB link
— D1CT04_1.fq.gz RNA-Seq 2.2 GB link
— D1CT08_1.fq.gz RNA-Seq 1.9 GB link
— D1CT12_1.fq.gz RNA-Seq 2.0 GB link
— D1CT16_2.fq.gz RNA-Seq 2.0 GB link
— D2CT00_2.fq.gz RNA-Seq 2.2 GB link
— D2CT12_1.fq.gz RNA-Seq 1.5 GB link
— D2CT20_2.fq.gz RNA-Seq 1.9 GB link
— D3CT00_1.fq.gz RNA-Seq 2.9 GB link
— D3CT08_1.fq.gz RNA-Seq 2.9 GB link
— D3CT16_1.fq.gz RNA-Seq 2.9 GB link
— D3CT20_1.fq.gz RNA-Seq 3.1 GB link
— FloxControl01_B_1.fq.gz RNA-Seq 1.6 GB link
— FloxControl01_C_1.fq.gz RNA-Seq 2.5 GB link
— FloxControl02_C_1.fq.gz RNA-Seq 2.8 GB link
— M1CT04_1.fq.gz RNA-Seq 4.4 GB link
— M1CT12_2.fq.gz RNA-Seq 3.6 GB link
— M1CT20_2.fq.gz RNA-Seq 2.7 GB link
— M1CT24_1.fq.gz RNA-Seq 5.4 GB link
— M1CT28_1.fq.gz RNA-Seq 4.1 GB link
— M1CT36_1.fq.gz RNA-Seq 3.1 GB link
— M1CT40_2.fq.gz RNA-Seq 2.8 GB link
— M2CT16_1.fq.gz RNA-Seq 1.8 GB link
— M2CT20_1.fq.gz RNA-Seq 1.3 GB link
— M2CT32_1.fq.gz RNA-Seq 1.7 GB link
— M2CT40_2.fq.gz RNA-Seq 1.8 GB link
— M2CT44_1.fq.gz RNA-Seq 2.2 GB link
— M3CT00_1.fq.gz RNA-Seq 2.0 GB link
— M3CT08_2.fq.gz RNA-Seq 1.8 GB link
— M3CT12_2.fq.gz RNA-Seq 1.7 GB link
— M3CT16_1.fq.gz RNA-Seq 1.9 GB link
— M3CT32_1.fq.gz RNA-Seq 1.4 GB link
— M3CT44_1.fq.gz RNA-Seq 2.1 GB link
— SRR2063284.sralite RNA-Seq 5.8 GB link
— SRR2063286 RNA-Seq 4.6 GB link
— SRR2063288 RNA-Seq 3.2 GB link
— SRR2063292 RNA-Seq 2.3 GB link
— SRR2063295 RNA-Seq 3.7 GB link
— SRR2063296 RNA-Seq 1.7 GB link
— SRR2063297 RNA-Seq 1.7 GB link
— SRR2063298 RNA-Seq 1.7 GB link
— SRR2063299 RNA-Seq 1019.5 MB link
— SRR2063302 RNA-Seq 1.7 GB link
— SRR2063303 RNA-Seq 1.6 GB link
— SRR2063305 RNA-Seq 1.7 GB link
— SRR2063309.sralite RNA-Seq 2.4 GB link
— SRR2063313 RNA-Seq 1.9 GB link
— SRR2063314 RNA-Seq 1.9 GB link
— SRR2063315.sralite RNA-Seq 1.8 GB link
— SRR2063317 RNA-Seq 1.6 GB link
— SRR2063318.sralite RNA-Seq 1.9 GB link
— SRR2063321 RNA-Seq 2.1 GB link
— SRR2063322 RNA-Seq 2.2 GB link
— SRR2063325 RNA-Seq 2.2 GB link
— SRR2063331 RNA-Seq 2.4 GB link
— SRR2063333 RNA-Seq 2.0 GB link
— SRR2063334 RNA-Seq 2.1 GB link
— SRR2063336 RNA-Seq 2.1 GB link
— SRR2063339 RNA-Seq 3.0 GB link
— SRR2063341 RNA-Seq 3.5 GB link
— SRR2479481 RNA-Seq 2.6 GB link