#!/usr/bin/env bash
# Bulk download script for GSE68618
# Generated from Yeo Lab Publications Database
# Total files: 79

OUTDIR="GSE68618"
mkdir -p "$OUTDIR"
cd "$OUTDIR"

# --- GEO supplementary files ---
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE68nnn/GSE68618/suppl/GSE68618_RAW.tar" -O "GSE68618_RAW.tar"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE68nnn/GSE68618/suppl/GSE68618_RawReadCounts.txt.gz" -O "GSE68618_RawReadCounts.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE68nnn/GSE68618/suppl/GSE68618_TrancriptFPKMCounts.txt.gz" -O "GSE68618_TrancriptFPKMCounts.txt.gz"

# --- SRA run files ---
# Tip: use 'fasterq-dump' from SRA Toolkit for FASTQ conversion
#      with optional renaming to original submitted FASTQ names.
# Set to 1 to rename SRR outputs (e.g. SRR_1.fastq.gz -> sample_R1.fastq.gz)
RENAME_SRA_TO_ORIGINAL=1

_compress_if_exists() {
  local stem="$1"
  if [ -f "${stem}.fastq" ]; then
    gzip -f "${stem}.fastq"
    echo "${stem}.fastq.gz"
    return 0
  fi
  if [ -f "${stem}.fq" ]; then
    gzip -f "${stem}.fq"
    echo "${stem}.fq.gz"
    return 0
  fi
  return 1
}

# Option A: Download via SRA Toolkit (recommended)
fasterq-dump --split-files "SRR2034956"
gz1="$(_compress_if_exists 'SRR2034956_1' || true)"
gz2="$(_compress_if_exists 'SRR2034956_2' || true)"
gzs="$(_compress_if_exists 'SRR2034956' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0415_s_7_ATGTCA.fastq.gz"
fi

fasterq-dump --split-files "SRR2034957"
gz1="$(_compress_if_exists 'SRR2034957_1' || true)"
gz2="$(_compress_if_exists 'SRR2034957_2' || true)"
gzs="$(_compress_if_exists 'SRR2034957' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0415_s_8_ATGTCA.fastq.gz"
fi

fasterq-dump --split-files "SRR2034958"
gz1="$(_compress_if_exists 'SRR2034958_1' || true)"
gz2="$(_compress_if_exists 'SRR2034958_2' || true)"
gzs="$(_compress_if_exists 'SRR2034958' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0445_s_7_ATGTCA.fastq.gz"
fi

fasterq-dump --split-files "SRR2034959"
gz1="$(_compress_if_exists 'SRR2034959_1' || true)"
gz2="$(_compress_if_exists 'SRR2034959_2' || true)"
gzs="$(_compress_if_exists 'SRR2034959' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0445_s_8_ATGTCA.fastq.gz"
fi

fasterq-dump --split-files "SRR2034960"
gz1="$(_compress_if_exists 'SRR2034960_1' || true)"
gz2="$(_compress_if_exists 'SRR2034960_2' || true)"
gzs="$(_compress_if_exists 'SRR2034960' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0415_s_7_CCGTCC.fastq.gz"
fi

fasterq-dump --split-files "SRR2034961"
gz1="$(_compress_if_exists 'SRR2034961_1' || true)"
gz2="$(_compress_if_exists 'SRR2034961_2' || true)"
gzs="$(_compress_if_exists 'SRR2034961' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0415_s_8_CCGTCC.fastq.gz"
fi

fasterq-dump --split-files "SRR2034962"
gz1="$(_compress_if_exists 'SRR2034962_1' || true)"
gz2="$(_compress_if_exists 'SRR2034962_2' || true)"
gzs="$(_compress_if_exists 'SRR2034962' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0445_s_7_CCGTCC.fastq.gz"
fi

fasterq-dump --split-files "SRR2034963"
gz1="$(_compress_if_exists 'SRR2034963_1' || true)"
gz2="$(_compress_if_exists 'SRR2034963_2' || true)"
gzs="$(_compress_if_exists 'SRR2034963' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0445_s_8_CCGTCC.fastq.gz"
fi

fasterq-dump --split-files "SRR2034964"
gz1="$(_compress_if_exists 'SRR2034964_1' || true)"
gz2="$(_compress_if_exists 'SRR2034964_2' || true)"
gzs="$(_compress_if_exists 'SRR2034964' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0415_s_7_GTCCGC.fastq.gz"
fi

fasterq-dump --split-files "SRR2034965"
gz1="$(_compress_if_exists 'SRR2034965_1' || true)"
gz2="$(_compress_if_exists 'SRR2034965_2' || true)"
gzs="$(_compress_if_exists 'SRR2034965' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0415_s_8_GTCCGC.fastq.gz"
fi

fasterq-dump --split-files "SRR2034966"
gz1="$(_compress_if_exists 'SRR2034966_1' || true)"
gz2="$(_compress_if_exists 'SRR2034966_2' || true)"
gzs="$(_compress_if_exists 'SRR2034966' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0445_s_7_GTCCGC.fastq.gz"
fi

fasterq-dump --split-files "SRR2034967"
gz1="$(_compress_if_exists 'SRR2034967_1' || true)"
gz2="$(_compress_if_exists 'SRR2034967_2' || true)"
gzs="$(_compress_if_exists 'SRR2034967' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0445_s_8_GTCCGC.fastq.gz"
fi

fasterq-dump --split-files "SRR2034968"
gz1="$(_compress_if_exists 'SRR2034968_1' || true)"
gz2="$(_compress_if_exists 'SRR2034968_2' || true)"
gzs="$(_compress_if_exists 'SRR2034968' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0415_s_7_CTTGTA.fastq.gz"
fi

fasterq-dump --split-files "SRR2034969"
gz1="$(_compress_if_exists 'SRR2034969_1' || true)"
gz2="$(_compress_if_exists 'SRR2034969_2' || true)"
gzs="$(_compress_if_exists 'SRR2034969' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0415_s_8_CTTGTA.fastq.gz"
fi

fasterq-dump --split-files "SRR2034970"
gz1="$(_compress_if_exists 'SRR2034970_1' || true)"
gz2="$(_compress_if_exists 'SRR2034970_2' || true)"
gzs="$(_compress_if_exists 'SRR2034970' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0445_s_7_CTTGTA.fastq.gz"
fi

fasterq-dump --split-files "SRR2034971"
gz1="$(_compress_if_exists 'SRR2034971_1' || true)"
gz2="$(_compress_if_exists 'SRR2034971_2' || true)"
gzs="$(_compress_if_exists 'SRR2034971' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0445_s_8_CTTGTA.fastq.gz"
fi

fasterq-dump --split-files "SRR2034972"
gz1="$(_compress_if_exists 'SRR2034972_1' || true)"
gz2="$(_compress_if_exists 'SRR2034972_2' || true)"
gzs="$(_compress_if_exists 'SRR2034972' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0415_s_7_AGTCAA.fastq.gz"
fi

fasterq-dump --split-files "SRR2034973"
gz1="$(_compress_if_exists 'SRR2034973_1' || true)"
gz2="$(_compress_if_exists 'SRR2034973_2' || true)"
gzs="$(_compress_if_exists 'SRR2034973' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0415_s_8_AGTCAA.fastq.gz"
fi

fasterq-dump --split-files "SRR2034974"
gz1="$(_compress_if_exists 'SRR2034974_1' || true)"
gz2="$(_compress_if_exists 'SRR2034974_2' || true)"
gzs="$(_compress_if_exists 'SRR2034974' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0445_s_7_AGTCAA.fastq.gz"
fi

fasterq-dump --split-files "SRR2034975"
gz1="$(_compress_if_exists 'SRR2034975_1' || true)"
gz2="$(_compress_if_exists 'SRR2034975_2' || true)"
gzs="$(_compress_if_exists 'SRR2034975' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0445_s_8_AGTCAA.fastq.gz"
fi

fasterq-dump --split-files "SRR2034976"
gz1="$(_compress_if_exists 'SRR2034976_1' || true)"
gz2="$(_compress_if_exists 'SRR2034976_2' || true)"
gzs="$(_compress_if_exists 'SRR2034976' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0277_s_2_GCCAAT.fastq.gz"
fi

fasterq-dump --split-files "SRR2034977"
gz1="$(_compress_if_exists 'SRR2034977_1' || true)"
gz2="$(_compress_if_exists 'SRR2034977_2' || true)"
gzs="$(_compress_if_exists 'SRR2034977' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0605_s_7_GAGTGG.fastq.gz"
fi

fasterq-dump --split-files "SRR2034978"
gz1="$(_compress_if_exists 'SRR2034978_1' || true)"
gz2="$(_compress_if_exists 'SRR2034978_2' || true)"
gzs="$(_compress_if_exists 'SRR2034978' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0605_s_8_GAGTGG.fastq.gz"
fi

fasterq-dump --split-files "SRR2034979"
gz1="$(_compress_if_exists 'SRR2034979_1' || true)"
gz2="$(_compress_if_exists 'SRR2034979_2' || true)"
gzs="$(_compress_if_exists 'SRR2034979' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0277_s_2_TGACCA.fastq.gz"
fi

fasterq-dump --split-files "SRR2034980"
gz1="$(_compress_if_exists 'SRR2034980_1' || true)"
gz2="$(_compress_if_exists 'SRR2034980_2' || true)"
gzs="$(_compress_if_exists 'SRR2034980' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0857_s_1_CTTGTA.fastq.gz"
fi

fasterq-dump --split-files "SRR2034981"
gz1="$(_compress_if_exists 'SRR2034981_1' || true)"
gz2="$(_compress_if_exists 'SRR2034981_2' || true)"
gzs="$(_compress_if_exists 'SRR2034981' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0277_s_2_ACAGTG.fastq.gz"
fi

fasterq-dump --split-files "SRR2034982"
gz1="$(_compress_if_exists 'SRR2034982_1' || true)"
gz2="$(_compress_if_exists 'SRR2034982_2' || true)"
gzs="$(_compress_if_exists 'SRR2034982' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0277_s_2_CAGATC.fastq.gz"
fi

fasterq-dump --split-files "SRR2034983"
gz1="$(_compress_if_exists 'SRR2034983_1' || true)"
gz2="$(_compress_if_exists 'SRR2034983_2' || true)"
gzs="$(_compress_if_exists 'SRR2034983' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0605_s_7_GCCAAT.fastq.gz"
fi

fasterq-dump --split-files "SRR2034984"
gz1="$(_compress_if_exists 'SRR2034984_1' || true)"
gz2="$(_compress_if_exists 'SRR2034984_2' || true)"
gzs="$(_compress_if_exists 'SRR2034984' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0605_s_8_GCCAAT.fastq.gz"
fi

fasterq-dump --split-files "SRR2034985"
gz1="$(_compress_if_exists 'SRR2034985_1' || true)"
gz2="$(_compress_if_exists 'SRR2034985_2' || true)"
gzs="$(_compress_if_exists 'SRR2034985' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0277_s_2_CGATGT.fastq.gz"
fi

fasterq-dump --split-files "SRR2034986"
gz1="$(_compress_if_exists 'SRR2034986_1' || true)"
gz2="$(_compress_if_exists 'SRR2034986_2' || true)"
gzs="$(_compress_if_exists 'SRR2034986' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0466_s_7_GCCAAT.fastq.gz"
fi

fasterq-dump --split-files "SRR2034987"
gz1="$(_compress_if_exists 'SRR2034987_1' || true)"
gz2="$(_compress_if_exists 'SRR2034987_2' || true)"
gzs="$(_compress_if_exists 'SRR2034987' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gzs" ]; then
  mv -f "$gzs" "FGC0466_s_8_GCCAAT.fastq.gz"
fi

fasterq-dump --split-files "SRR2034988"
gz1="$(_compress_if_exists 'SRR2034988_1' || true)"
gz2="$(_compress_if_exists 'SRR2034988_2' || true)"
gzs="$(_compress_if_exists 'SRR2034988' || true)"

fasterq-dump --split-files "SRR2034989"
gz1="$(_compress_if_exists 'SRR2034989_1' || true)"
gz2="$(_compress_if_exists 'SRR2034989_2' || true)"
gzs="$(_compress_if_exists 'SRR2034989' || true)"

fasterq-dump --split-files "SRR2034990"
gz1="$(_compress_if_exists 'SRR2034990_1' || true)"
gz2="$(_compress_if_exists 'SRR2034990_2' || true)"
gzs="$(_compress_if_exists 'SRR2034990' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FGC0261_s_2_1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FGC0261_s_2_2.fastq.gz"
fi

fasterq-dump --split-files "SRR2034991"
gz1="$(_compress_if_exists 'SRR2034991_1' || true)"
gz2="$(_compress_if_exists 'SRR2034991_2' || true)"
gzs="$(_compress_if_exists 'SRR2034991' || true)"

fasterq-dump --split-files "SRR2034992"
gz1="$(_compress_if_exists 'SRR2034992_1' || true)"
gz2="$(_compress_if_exists 'SRR2034992_2' || true)"
gzs="$(_compress_if_exists 'SRR2034992' || true)"

fasterq-dump --split-files "SRR2034993"
gz1="$(_compress_if_exists 'SRR2034993_1' || true)"
gz2="$(_compress_if_exists 'SRR2034993_2' || true)"
gzs="$(_compress_if_exists 'SRR2034993' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "FGC0260_s_2_1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "FGC0260_s_2_2.fastq.gz"
fi


# Option B: Direct download (larger .sra files)
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034956/SRR2034956"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034957/SRR2034957"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034958/SRR2034958"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034959/SRR2034959"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034960/SRR2034960"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034961/SRR2034961"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034962/SRR2034962"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034963/SRR2034963"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034964/SRR2034964"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034965/SRR2034965"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034966/SRR2034966"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034967/SRR2034967"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034968/SRR2034968"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034969/SRR2034969"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034970/SRR2034970"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034971/SRR2034971"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034972/SRR2034972"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034973/SRR2034973"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034974/SRR2034974"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034975/SRR2034975"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034976/SRR2034976"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034977/SRR2034977"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034978/SRR2034978"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034979/SRR2034979"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/034/SRR2034980/SRR2034980.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034981/SRR2034981"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034982/SRR2034982"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034983/SRR2034983"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034984/SRR2034984"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/034/SRR2034985/SRR2034985.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034986/SRR2034986"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034987/SRR2034987"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034988/SRR2034988"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034989/SRR2034989"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034990/SRR2034990"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034991/SRR2034991"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034992/SRR2034992"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/034/SRR2034993/SRR2034993.sralite.1"

# --- Additional data files ---
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034991/SRR2034991"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034992/SRR2034992"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034988/SRR2034988"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034990/SRR2034990"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034989/SRR2034989"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/034/SRR2034993/SRR2034993.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034976/SRR2034976"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034979/SRR2034979"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034986/SRR2034986"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034977/SRR2034977"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034984/SRR2034984"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034978/SRR2034978"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/034/SRR2034980/SRR2034980.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034981/SRR2034981"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034982/SRR2034982"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034983/SRR2034983"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/034/SRR2034985/SRR2034985.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034987/SRR2034987"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034968/SRR2034968"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034964/SRR2034964"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034973/SRR2034973"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034961/SRR2034961"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034966/SRR2034966"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034975/SRR2034975"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034971/SRR2034971"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034967/SRR2034967"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034956/SRR2034956"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034957/SRR2034957"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034958/SRR2034958"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034959/SRR2034959"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034960/SRR2034960"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034962/SRR2034962"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034963/SRR2034963"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034965/SRR2034965"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034969/SRR2034969"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034970/SRR2034970"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034972/SRR2034972"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2034974/SRR2034974"

echo "Download complete. Files saved to $OUTDIR"