#!/usr/bin/env bash
# Bulk download script for GSE73211
# Generated from Yeo Lab Publications Database
# Total files: 195

OUTDIR="GSE73211"
mkdir -p "$OUTDIR"
cd "$OUTDIR"

# --- GEO supplementary files ---
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE73nnn/GSE73211/suppl/GSE73211_RAW.tar" -O "GSE73211_RAW.tar"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE73nnn/GSE73211/suppl/GSE73211_isogenic.TPM.txt.gz" -O "GSE73211_isogenic.TPM.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE73nnn/GSE73211/suppl/GSE73211_isogenic.gReadcount.txt.gz" -O "GSE73211_isogenic.gReadcount.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE73nnn/GSE73211/suppl/GSE73211_nonisogenic.TPM.txt.gz" -O "GSE73211_nonisogenic.TPM.txt.gz"
wget -nc "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE73nnn/GSE73211/suppl/GSE73211_nonisogenic.gReadcount.txt.gz" -O "GSE73211_nonisogenic.gReadcount.txt.gz"

# --- SRA run files ---
# Tip: use 'fasterq-dump' from SRA Toolkit for FASTQ conversion
#      with optional renaming to original submitted FASTQ names.
# Set to 1 to rename SRR outputs (e.g. SRR_1.fastq.gz -> sample_R1.fastq.gz)
RENAME_SRA_TO_ORIGINAL=1

_compress_if_exists() {
  local stem="$1"
  if [ -f "${stem}.fastq" ]; then
    gzip -f "${stem}.fastq"
    echo "${stem}.fastq.gz"
    return 0
  fi
  if [ -f "${stem}.fq" ]; then
    gzip -f "${stem}.fq"
    echo "${stem}.fq.gz"
    return 0
  fi
  return 1
}

# Option A: Download via SRA Toolkit (recommended)
fasterq-dump --split-files "SRR2453299"
gz1="$(_compress_if_exists 'SRR2453299_1' || true)"
gz2="$(_compress_if_exists 'SRR2453299_2' || true)"
gzs="$(_compress_if_exists 'SRR2453299' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_hJ-11_iPS_Fibroblast.R1.3VFXHS1_243_D0RC7ACXX_1.fastq.gz"
fi

fasterq-dump --split-files "SRR2453300"
gz1="$(_compress_if_exists 'SRR2453300_1' || true)"
gz2="$(_compress_if_exists 'SRR2453300_2' || true)"
gzs="$(_compress_if_exists 'SRR2453300' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_hJ-11_iPS_Fibroblast.R1.3VFXHS1_264_D0T8EACXX_2.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_hJ-11_iPS_Fibroblast.R2.3VFXHS1_264_D0T8EACXX_2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453301"
gz1="$(_compress_if_exists 'SRR2453301_1' || true)"
gz2="$(_compress_if_exists 'SRR2453301_2' || true)"
gzs="$(_compress_if_exists 'SRR2453301' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_hJ-11_iPS_p38.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_hJ-11_iPS_p38.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453302"
gz1="$(_compress_if_exists 'SRR2453302_1' || true)"
gz2="$(_compress_if_exists 'SRR2453302_2' || true)"
gzs="$(_compress_if_exists 'SRR2453302' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_hJ-1_iPS_Fibroblast.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_hJ-1_iPS_Fibroblast.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453303"
gz1="$(_compress_if_exists 'SRR2453303_1' || true)"
gz2="$(_compress_if_exists 'SRR2453303_2' || true)"
gzs="$(_compress_if_exists 'SRR2453303' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_hJ-1_iPS_p38.R1.3VFXHS1_243_D0RC7ACXX_7.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_hJ-1_iPS_p38.R2.3VFXHS1_243_D0RC7ACXX_7.fastq.gz"
fi

fasterq-dump --split-files "SRR2453304"
gz1="$(_compress_if_exists 'SRR2453304_1' || true)"
gz2="$(_compress_if_exists 'SRR2453304_2' || true)"
gzs="$(_compress_if_exists 'SRR2453304' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_hJ-1_iPS_p38.R1.3VFXHS1_264_D0T8EACXX_2.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_hJ-1_iPS_p38.R2.3VFXHS1_264_D0T8EACXX_2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453305"
gz1="$(_compress_if_exists 'SRR2453305_1' || true)"
gz2="$(_compress_if_exists 'SRR2453305_2' || true)"
gzs="$(_compress_if_exists 'SRR2453305' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_hJ-2_iPS_Fibroblast.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_hJ-2_iPS_Fibroblast.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453306"
gz1="$(_compress_if_exists 'SRR2453306_1' || true)"
gz2="$(_compress_if_exists 'SRR2453306_2' || true)"
gzs="$(_compress_if_exists 'SRR2453306' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_hJ-2_iPS_p38.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_hJ-2_iPS_p38.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453307"
gz1="$(_compress_if_exists 'SRR2453307_1' || true)"
gz2="$(_compress_if_exists 'SRR2453307_2' || true)"
gzs="$(_compress_if_exists 'SRR2453307' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_hJ-3_iPS_Fibroblast.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_hJ-3_iPS_Fibroblast.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453308"
gz1="$(_compress_if_exists 'SRR2453308_1' || true)"
gz2="$(_compress_if_exists 'SRR2453308_2' || true)"
gzs="$(_compress_if_exists 'SRR2453308' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_hJ-3_iPS_p38.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_hJ-3_iPS_p38.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453309"
gz1="$(_compress_if_exists 'SRR2453309_1' || true)"
gz2="$(_compress_if_exists 'SRR2453309_2' || true)"
gzs="$(_compress_if_exists 'SRR2453309' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_hJ-8_iPS_Fibroblast.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_hJ-8_iPS_Fibroblast.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453310"
gz1="$(_compress_if_exists 'SRR2453310_1' || true)"
gz2="$(_compress_if_exists 'SRR2453310_2' || true)"
gzs="$(_compress_if_exists 'SRR2453310' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_hJ-8_iPS_p39.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_hJ-8_iPS_p39.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453311"
gz1="$(_compress_if_exists 'SRR2453311_1' || true)"
gz2="$(_compress_if_exists 'SRR2453311_2' || true)"
gzs="$(_compress_if_exists 'SRR2453311' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_hJ-9_iPS_Fibroblast.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_hJ-9_iPS_Fibroblast.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453312"
gz1="$(_compress_if_exists 'SRR2453312_1' || true)"
gz2="$(_compress_if_exists 'SRR2453312_2' || true)"
gzs="$(_compress_if_exists 'SRR2453312' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_hJ-9_iPS_p38.R1.3VFXHS1_257_D0RBJACXX_2.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_hJ-9_iPS_p38.R2.3VFXHS1_257_D0RBJACXX_2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453313"
gz1="$(_compress_if_exists 'SRR2453313_1' || true)"
gz2="$(_compress_if_exists 'SRR2453313_2' || true)"
gzs="$(_compress_if_exists 'SRR2453313' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_hJ-9_iPS_p38.R1.3VFXHS1_257_D0RBJACXX_3.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_hJ-9_iPS_p38.R2.3VFXHS1_257_D0RBJACXX_3.fastq.gz"
fi

fasterq-dump --split-files "SRR2453314"
gz1="$(_compress_if_exists 'SRR2453314_1' || true)"
gz2="$(_compress_if_exists 'SRR2453314_2' || true)"
gzs="$(_compress_if_exists 'SRR2453314' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_hJ-9_iPS_p38.R1.3VFXHS1_264_D0T8EACXX_2.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_hJ-9_iPS_p38.R2.3VFXHS1_264_D0T8EACXX_2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453315"
gz1="$(_compress_if_exists 'SRR2453315_1' || true)"
gz2="$(_compress_if_exists 'SRR2453315_2' || true)"
gzs="$(_compress_if_exists 'SRR2453315' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_2-1-p41plus8.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_2-1-p41plus8.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453316"
gz1="$(_compress_if_exists 'SRR2453316_1' || true)"
gz2="$(_compress_if_exists 'SRR2453316_2' || true)"
gzs="$(_compress_if_exists 'SRR2453316' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_2-2-p41plus8.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_2-2-p41plus8.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453317"
gz1="$(_compress_if_exists 'SRR2453317_1' || true)"
gz2="$(_compress_if_exists 'SRR2453317_2' || true)"
gzs="$(_compress_if_exists 'SRR2453317' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_2-3-p41plus8.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_2-3-p41plus8.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453318"
gz1="$(_compress_if_exists 'SRR2453318_1' || true)"
gz2="$(_compress_if_exists 'SRR2453318_2' || true)"
gzs="$(_compress_if_exists 'SRR2453318' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_2-6_Fibroblast.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_2-6_Fibroblast.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453319"
gz1="$(_compress_if_exists 'SRR2453319_1' || true)"
gz2="$(_compress_if_exists 'SRR2453319_2' || true)"
gzs="$(_compress_if_exists 'SRR2453319' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_2-6_GFP_05_Fibroblast.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_2-6_GFP_05_Fibroblast.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453320"
gz1="$(_compress_if_exists 'SRR2453320_1' || true)"
gz2="$(_compress_if_exists 'SRR2453320_2' || true)"
gzs="$(_compress_if_exists 'SRR2453320' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_2-6_GFP_12_Fibroblast.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_2-6_GFP_12_Fibroblast.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453321"
gz1="$(_compress_if_exists 'SRR2453321_1' || true)"
gz2="$(_compress_if_exists 'SRR2453321_2' || true)"
gzs="$(_compress_if_exists 'SRR2453321' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_2-6_GFP-12_p32.R1.3VFXHS1_257_D0RBJACXX_3.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_2-6_GFP-12_p32.R2.3VFXHS1_257_D0RBJACXX_3.fastq.gz"
fi

fasterq-dump --split-files "SRR2453322"
gz1="$(_compress_if_exists 'SRR2453322_1' || true)"
gz2="$(_compress_if_exists 'SRR2453322_2' || true)"
gzs="$(_compress_if_exists 'SRR2453322' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_2-6_GFP-12_p32.R1.3VFXHS1_264_D0T8EACXX_2.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_2-6_GFP-12_p32.R2.3VFXHS1_264_D0T8EACXX_2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453323"
gz1="$(_compress_if_exists 'SRR2453323_1' || true)"
gz2="$(_compress_if_exists 'SRR2453323_2' || true)"
gzs="$(_compress_if_exists 'SRR2453323' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_2-6_GFP_13_Fibroblast.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_2-6_GFP_13_Fibroblast.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453324"
gz1="$(_compress_if_exists 'SRR2453324_1' || true)"
gz2="$(_compress_if_exists 'SRR2453324_2' || true)"
gzs="$(_compress_if_exists 'SRR2453324' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_2-6_GFP-13_p32.R1.3VFXHS1_257_D0RBJACXX_3.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_2-6_GFP-13_p32.R2.3VFXHS1_257_D0RBJACXX_3.fastq.gz"
fi

fasterq-dump --split-files "SRR2453325"
gz1="$(_compress_if_exists 'SRR2453325_1' || true)"
gz2="$(_compress_if_exists 'SRR2453325_2' || true)"
gzs="$(_compress_if_exists 'SRR2453325' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_2-6_GFP-13_p32.R1.3VFXHS1_264_D0T8EACXX_2.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_2-6_GFP-13_p32.R2.3VFXHS1_264_D0T8EACXX_2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453326"
gz1="$(_compress_if_exists 'SRR2453326_1' || true)"
gz2="$(_compress_if_exists 'SRR2453326_2' || true)"
gzs="$(_compress_if_exists 'SRR2453326' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_2-6_GFP-5_p32.R1.3VFXHS1_257_D0RBJACXX_3.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_2-6_GFP-5_p32.R2.3VFXHS1_257_D0RBJACXX_3.fastq.gz"
fi

fasterq-dump --split-files "SRR2453327"
gz1="$(_compress_if_exists 'SRR2453327_1' || true)"
gz2="$(_compress_if_exists 'SRR2453327_2' || true)"
gzs="$(_compress_if_exists 'SRR2453327' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_2-6_GFP-5_p32.R1.3VFXHS1_264_D0T8EACXX_2.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_2-6_GFP-5_p32.R2.3VFXHS1_264_D0T8EACXX_2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453328"
gz1="$(_compress_if_exists 'SRR2453328_1' || true)"
gz2="$(_compress_if_exists 'SRR2453328_2' || true)"
gzs="$(_compress_if_exists 'SRR2453328' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_3-1_p51plus7.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_3-1_p51plus7.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453329"
gz1="$(_compress_if_exists 'SRR2453329_1' || true)"
gz2="$(_compress_if_exists 'SRR2453329_2' || true)"
gzs="$(_compress_if_exists 'SRR2453329' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_3-2_p51plus7.R1.3VFXHS1_257_D0RBJACXX_7.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_3-2_p51plus7.R2.3VFXHS1_257_D0RBJACXX_7.fastq.gz"
fi

fasterq-dump --split-files "SRR2453330"
gz1="$(_compress_if_exists 'SRR2453330_1' || true)"
gz2="$(_compress_if_exists 'SRR2453330_2' || true)"
gzs="$(_compress_if_exists 'SRR2453330' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_3-2_p51plus7.R1.3VFXHS1_264_D0T8EACXX_1.fastq.gz"
fi

fasterq-dump --split-files "SRR2453331"
gz1="$(_compress_if_exists 'SRR2453331_1' || true)"
gz2="$(_compress_if_exists 'SRR2453331_2' || true)"
gzs="$(_compress_if_exists 'SRR2453331' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_3-3_p51plus7.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_3-3_p51plus7.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453332"
gz1="$(_compress_if_exists 'SRR2453332_1' || true)"
gz2="$(_compress_if_exists 'SRR2453332_2' || true)"
gzs="$(_compress_if_exists 'SRR2453332' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_3-6_Fibroblast.R1.3VFXHS1_243_D0RC7ACXX_6.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_3-6_Fibroblast.R2.3VFXHS1_243_D0RC7ACXX_6.fastq.gz"
fi

fasterq-dump --split-files "SRR2453333"
gz1="$(_compress_if_exists 'SRR2453333_1' || true)"
gz2="$(_compress_if_exists 'SRR2453333_2' || true)"
gzs="$(_compress_if_exists 'SRR2453333' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_3-6_Fibroblast.R1.3VFXHS1_264_D0T8EACXX_2.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_3-6_Fibroblast.R2.3VFXHS1_264_D0T8EACXX_2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453334"
gz1="$(_compress_if_exists 'SRR2453334_1' || true)"
gz2="$(_compress_if_exists 'SRR2453334_2' || true)"
gzs="$(_compress_if_exists 'SRR2453334' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_3-6_GFP_02_Fibroblast.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_3-6_GFP_02_Fibroblast.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453335"
gz1="$(_compress_if_exists 'SRR2453335_1' || true)"
gz2="$(_compress_if_exists 'SRR2453335_2' || true)"
gzs="$(_compress_if_exists 'SRR2453335' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_3-6_GFP_03_Fibroblast.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_3-6_GFP_03_Fibroblast.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453336"
gz1="$(_compress_if_exists 'SRR2453336_1' || true)"
gz2="$(_compress_if_exists 'SRR2453336_2' || true)"
gzs="$(_compress_if_exists 'SRR2453336' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_3-6_GFP_15_Fibroblast.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_3-6_GFP_15_Fibroblast.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453337"
gz1="$(_compress_if_exists 'SRR2453337_1' || true)"
gz2="$(_compress_if_exists 'SRR2453337_2' || true)"
gzs="$(_compress_if_exists 'SRR2453337' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_3-6_GFP-15_p32.R1.3VFXHS1_257_D0RBJACXX_5.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_3-6_GFP-15_p32.R2.3VFXHS1_257_D0RBJACXX_5.fastq.gz"
fi

fasterq-dump --split-files "SRR2453338"
gz1="$(_compress_if_exists 'SRR2453338_1' || true)"
gz2="$(_compress_if_exists 'SRR2453338_2' || true)"
gzs="$(_compress_if_exists 'SRR2453338' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_3-6_GFP-15_p32.R1.3VFXHS1_264_D0T8EACXX_1.fastq.gz"
fi

fasterq-dump --split-files "SRR2453339"
gz1="$(_compress_if_exists 'SRR2453339_1' || true)"
gz2="$(_compress_if_exists 'SRR2453339_2' || true)"
gzs="$(_compress_if_exists 'SRR2453339' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_3-6_GFP-2_p32.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_3-6_GFP-2_p32.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453340"
gz1="$(_compress_if_exists 'SRR2453340_1' || true)"
gz2="$(_compress_if_exists 'SRR2453340_2' || true)"
gzs="$(_compress_if_exists 'SRR2453340' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_HUES_3-6_GFP-3_p32.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_HUES_3-6_GFP-3_p32.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453341"
gz1="$(_compress_if_exists 'SRR2453341_1' || true)"
gz2="$(_compress_if_exists 'SRR2453341_2' || true)"
gzs="$(_compress_if_exists 'SRR2453341' || true)"
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz1" ]; then
  mv -f "$gz1" "Sample_Human_Dermal_Fibroblast.R1.fastq.gz"
fi
if [ "$RENAME_SRA_TO_ORIGINAL" = "1" ] && [ -n "$gz2" ]; then
  mv -f "$gz2" "Sample_Human_Dermal_Fibroblast.R2.fastq.gz"
fi

fasterq-dump --split-files "SRR2453342"
gz1="$(_compress_if_exists 'SRR2453342_1' || true)"
gz2="$(_compress_if_exists 'SRR2453342_2' || true)"
gzs="$(_compress_if_exists 'SRR2453342' || true)"

fasterq-dump --split-files "SRR2453343"
gz1="$(_compress_if_exists 'SRR2453343_1' || true)"
gz2="$(_compress_if_exists 'SRR2453343_2' || true)"
gzs="$(_compress_if_exists 'SRR2453343' || true)"

fasterq-dump --split-files "SRR2453344"
gz1="$(_compress_if_exists 'SRR2453344_1' || true)"
gz2="$(_compress_if_exists 'SRR2453344_2' || true)"
gzs="$(_compress_if_exists 'SRR2453344' || true)"

fasterq-dump --split-files "SRR2453345"
gz1="$(_compress_if_exists 'SRR2453345_1' || true)"
gz2="$(_compress_if_exists 'SRR2453345_2' || true)"
gzs="$(_compress_if_exists 'SRR2453345' || true)"

fasterq-dump --split-files "SRR2453346"
gz1="$(_compress_if_exists 'SRR2453346_1' || true)"
gz2="$(_compress_if_exists 'SRR2453346_2' || true)"
gzs="$(_compress_if_exists 'SRR2453346' || true)"

fasterq-dump --split-files "SRR2453347"
gz1="$(_compress_if_exists 'SRR2453347_1' || true)"
gz2="$(_compress_if_exists 'SRR2453347_2' || true)"
gzs="$(_compress_if_exists 'SRR2453347' || true)"

fasterq-dump --split-files "SRR2453348"
gz1="$(_compress_if_exists 'SRR2453348_1' || true)"
gz2="$(_compress_if_exists 'SRR2453348_2' || true)"
gzs="$(_compress_if_exists 'SRR2453348' || true)"

fasterq-dump --split-files "SRR2453349"
gz1="$(_compress_if_exists 'SRR2453349_1' || true)"
gz2="$(_compress_if_exists 'SRR2453349_2' || true)"
gzs="$(_compress_if_exists 'SRR2453349' || true)"

fasterq-dump --split-files "SRR2453350"
gz1="$(_compress_if_exists 'SRR2453350_1' || true)"
gz2="$(_compress_if_exists 'SRR2453350_2' || true)"
gzs="$(_compress_if_exists 'SRR2453350' || true)"

fasterq-dump --split-files "SRR2453351"
gz1="$(_compress_if_exists 'SRR2453351_1' || true)"
gz2="$(_compress_if_exists 'SRR2453351_2' || true)"
gzs="$(_compress_if_exists 'SRR2453351' || true)"

fasterq-dump --split-files "SRR2453352"
gz1="$(_compress_if_exists 'SRR2453352_1' || true)"
gz2="$(_compress_if_exists 'SRR2453352_2' || true)"
gzs="$(_compress_if_exists 'SRR2453352' || true)"

fasterq-dump --split-files "SRR2453353"
gz1="$(_compress_if_exists 'SRR2453353_1' || true)"
gz2="$(_compress_if_exists 'SRR2453353_2' || true)"
gzs="$(_compress_if_exists 'SRR2453353' || true)"

fasterq-dump --split-files "SRR2453354"
gz1="$(_compress_if_exists 'SRR2453354_1' || true)"
gz2="$(_compress_if_exists 'SRR2453354_2' || true)"
gzs="$(_compress_if_exists 'SRR2453354' || true)"

fasterq-dump --split-files "SRR2453355"
gz1="$(_compress_if_exists 'SRR2453355_1' || true)"
gz2="$(_compress_if_exists 'SRR2453355_2' || true)"
gzs="$(_compress_if_exists 'SRR2453355' || true)"

fasterq-dump --split-files "SRR2453356"
gz1="$(_compress_if_exists 'SRR2453356_1' || true)"
gz2="$(_compress_if_exists 'SRR2453356_2' || true)"
gzs="$(_compress_if_exists 'SRR2453356' || true)"

fasterq-dump --split-files "SRR2453357"
gz1="$(_compress_if_exists 'SRR2453357_1' || true)"
gz2="$(_compress_if_exists 'SRR2453357_2' || true)"
gzs="$(_compress_if_exists 'SRR2453357' || true)"

fasterq-dump --split-files "SRR2453358"
gz1="$(_compress_if_exists 'SRR2453358_1' || true)"
gz2="$(_compress_if_exists 'SRR2453358_2' || true)"
gzs="$(_compress_if_exists 'SRR2453358' || true)"

fasterq-dump --split-files "SRR2453359"
gz1="$(_compress_if_exists 'SRR2453359_1' || true)"
gz2="$(_compress_if_exists 'SRR2453359_2' || true)"
gzs="$(_compress_if_exists 'SRR2453359' || true)"

fasterq-dump --split-files "SRR2453360"
gz1="$(_compress_if_exists 'SRR2453360_1' || true)"
gz2="$(_compress_if_exists 'SRR2453360_2' || true)"
gzs="$(_compress_if_exists 'SRR2453360' || true)"

fasterq-dump --split-files "SRR2453361"
gz1="$(_compress_if_exists 'SRR2453361_1' || true)"
gz2="$(_compress_if_exists 'SRR2453361_2' || true)"
gzs="$(_compress_if_exists 'SRR2453361' || true)"

fasterq-dump --split-files "SRR2453362"
gz1="$(_compress_if_exists 'SRR2453362_1' || true)"
gz2="$(_compress_if_exists 'SRR2453362_2' || true)"
gzs="$(_compress_if_exists 'SRR2453362' || true)"

fasterq-dump --split-files "SRR2453363"
gz1="$(_compress_if_exists 'SRR2453363_1' || true)"
gz2="$(_compress_if_exists 'SRR2453363_2' || true)"
gzs="$(_compress_if_exists 'SRR2453363' || true)"

fasterq-dump --split-files "SRR2453364"
gz1="$(_compress_if_exists 'SRR2453364_1' || true)"
gz2="$(_compress_if_exists 'SRR2453364_2' || true)"
gzs="$(_compress_if_exists 'SRR2453364' || true)"

fasterq-dump --split-files "SRR2453365"
gz1="$(_compress_if_exists 'SRR2453365_1' || true)"
gz2="$(_compress_if_exists 'SRR2453365_2' || true)"
gzs="$(_compress_if_exists 'SRR2453365' || true)"

fasterq-dump --split-files "SRR2453366"
gz1="$(_compress_if_exists 'SRR2453366_1' || true)"
gz2="$(_compress_if_exists 'SRR2453366_2' || true)"
gzs="$(_compress_if_exists 'SRR2453366' || true)"

fasterq-dump --split-files "SRR2453367"
gz1="$(_compress_if_exists 'SRR2453367_1' || true)"
gz2="$(_compress_if_exists 'SRR2453367_2' || true)"
gzs="$(_compress_if_exists 'SRR2453367' || true)"

fasterq-dump --split-files "SRR2453368"
gz1="$(_compress_if_exists 'SRR2453368_1' || true)"
gz2="$(_compress_if_exists 'SRR2453368_2' || true)"
gzs="$(_compress_if_exists 'SRR2453368' || true)"

fasterq-dump --split-files "SRR2453369"
gz1="$(_compress_if_exists 'SRR2453369_1' || true)"
gz2="$(_compress_if_exists 'SRR2453369_2' || true)"
gzs="$(_compress_if_exists 'SRR2453369' || true)"

fasterq-dump --split-files "SRR2453370"
gz1="$(_compress_if_exists 'SRR2453370_1' || true)"
gz2="$(_compress_if_exists 'SRR2453370_2' || true)"
gzs="$(_compress_if_exists 'SRR2453370' || true)"

fasterq-dump --split-files "SRR2453371"
gz1="$(_compress_if_exists 'SRR2453371_1' || true)"
gz2="$(_compress_if_exists 'SRR2453371_2' || true)"
gzs="$(_compress_if_exists 'SRR2453371' || true)"

fasterq-dump --split-files "SRR9908388"
gz1="$(_compress_if_exists 'SRR9908388_1' || true)"
gz2="$(_compress_if_exists 'SRR9908388_2' || true)"
gzs="$(_compress_if_exists 'SRR9908388' || true)"

fasterq-dump --split-files "SRR9908389"
gz1="$(_compress_if_exists 'SRR9908389_1' || true)"
gz2="$(_compress_if_exists 'SRR9908389_2' || true)"
gzs="$(_compress_if_exists 'SRR9908389' || true)"

fasterq-dump --split-files "SRR9908390"
gz1="$(_compress_if_exists 'SRR9908390_1' || true)"
gz2="$(_compress_if_exists 'SRR9908390_2' || true)"
gzs="$(_compress_if_exists 'SRR9908390' || true)"

fasterq-dump --split-files "SRR9908391"
gz1="$(_compress_if_exists 'SRR9908391_1' || true)"
gz2="$(_compress_if_exists 'SRR9908391_2' || true)"
gzs="$(_compress_if_exists 'SRR9908391' || true)"

fasterq-dump --split-files "SRR9908392"
gz1="$(_compress_if_exists 'SRR9908392_1' || true)"
gz2="$(_compress_if_exists 'SRR9908392_2' || true)"
gzs="$(_compress_if_exists 'SRR9908392' || true)"

fasterq-dump --split-files "SRR9908393"
gz1="$(_compress_if_exists 'SRR9908393_1' || true)"
gz2="$(_compress_if_exists 'SRR9908393_2' || true)"
gzs="$(_compress_if_exists 'SRR9908393' || true)"

fasterq-dump --split-files "SRR9908394"
gz1="$(_compress_if_exists 'SRR9908394_1' || true)"
gz2="$(_compress_if_exists 'SRR9908394_2' || true)"
gzs="$(_compress_if_exists 'SRR9908394' || true)"

fasterq-dump --split-files "SRR9908395"
gz1="$(_compress_if_exists 'SRR9908395_1' || true)"
gz2="$(_compress_if_exists 'SRR9908395_2' || true)"
gzs="$(_compress_if_exists 'SRR9908395' || true)"

fasterq-dump --split-files "SRR9908396"
gz1="$(_compress_if_exists 'SRR9908396_1' || true)"
gz2="$(_compress_if_exists 'SRR9908396_2' || true)"
gzs="$(_compress_if_exists 'SRR9908396' || true)"

fasterq-dump --split-files "SRR9908397"
gz1="$(_compress_if_exists 'SRR9908397_1' || true)"
gz2="$(_compress_if_exists 'SRR9908397_2' || true)"
gzs="$(_compress_if_exists 'SRR9908397' || true)"

fasterq-dump --split-files "SRR9908398"
gz1="$(_compress_if_exists 'SRR9908398_1' || true)"
gz2="$(_compress_if_exists 'SRR9908398_2' || true)"
gzs="$(_compress_if_exists 'SRR9908398' || true)"

fasterq-dump --split-files "SRR9908399"
gz1="$(_compress_if_exists 'SRR9908399_1' || true)"
gz2="$(_compress_if_exists 'SRR9908399_2' || true)"
gzs="$(_compress_if_exists 'SRR9908399' || true)"

fasterq-dump --split-files "SRR9908400"
gz1="$(_compress_if_exists 'SRR9908400_1' || true)"
gz2="$(_compress_if_exists 'SRR9908400_2' || true)"
gzs="$(_compress_if_exists 'SRR9908400' || true)"

fasterq-dump --split-files "SRR9908401"
gz1="$(_compress_if_exists 'SRR9908401_1' || true)"
gz2="$(_compress_if_exists 'SRR9908401_2' || true)"
gzs="$(_compress_if_exists 'SRR9908401' || true)"

fasterq-dump --split-files "SRR9908402"
gz1="$(_compress_if_exists 'SRR9908402_1' || true)"
gz2="$(_compress_if_exists 'SRR9908402_2' || true)"
gzs="$(_compress_if_exists 'SRR9908402' || true)"

fasterq-dump --split-files "SRR9908403"
gz1="$(_compress_if_exists 'SRR9908403_1' || true)"
gz2="$(_compress_if_exists 'SRR9908403_2' || true)"
gzs="$(_compress_if_exists 'SRR9908403' || true)"

fasterq-dump --split-files "SRR9908404"
gz1="$(_compress_if_exists 'SRR9908404_1' || true)"
gz2="$(_compress_if_exists 'SRR9908404_2' || true)"
gzs="$(_compress_if_exists 'SRR9908404' || true)"

fasterq-dump --split-files "SRR9908405"
gz1="$(_compress_if_exists 'SRR9908405_1' || true)"
gz2="$(_compress_if_exists 'SRR9908405_2' || true)"
gzs="$(_compress_if_exists 'SRR9908405' || true)"

fasterq-dump --split-files "SRR9908406"
gz1="$(_compress_if_exists 'SRR9908406_1' || true)"
gz2="$(_compress_if_exists 'SRR9908406_2' || true)"
gzs="$(_compress_if_exists 'SRR9908406' || true)"

fasterq-dump --split-files "SRR9908407"
gz1="$(_compress_if_exists 'SRR9908407_1' || true)"
gz2="$(_compress_if_exists 'SRR9908407_2' || true)"
gzs="$(_compress_if_exists 'SRR9908407' || true)"

fasterq-dump --split-files "SRR9908408"
gz1="$(_compress_if_exists 'SRR9908408_1' || true)"
gz2="$(_compress_if_exists 'SRR9908408_2' || true)"
gzs="$(_compress_if_exists 'SRR9908408' || true)"

fasterq-dump --split-files "SRR9908409"
gz1="$(_compress_if_exists 'SRR9908409_1' || true)"
gz2="$(_compress_if_exists 'SRR9908409_2' || true)"
gzs="$(_compress_if_exists 'SRR9908409' || true)"


# Option B: Direct download (larger .sra files)
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453299/SRR2453299"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453300/SRR2453300"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453301/SRR2453301"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453302/SRR2453302"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453303/SRR2453303"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453304/SRR2453304"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453305/SRR2453305"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453306/SRR2453306"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453307/SRR2453307"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453308/SRR2453308"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453309/SRR2453309"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453310/SRR2453310"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453311/SRR2453311"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453312/SRR2453312"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453313/SRR2453313"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453314/SRR2453314"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453315/SRR2453315"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453316/SRR2453316"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453317/SRR2453317"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453318/SRR2453318"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453319/SRR2453319"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453320/SRR2453320"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453321/SRR2453321"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453322/SRR2453322"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453323/SRR2453323"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453324/SRR2453324"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453325/SRR2453325"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453326/SRR2453326"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453327/SRR2453327"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453328/SRR2453328"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453329/SRR2453329"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453330/SRR2453330"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453331/SRR2453331"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453332/SRR2453332"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453333/SRR2453333"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453334/SRR2453334"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453335/SRR2453335.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453336/SRR2453336"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453337/SRR2453337.sralite.1"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453338/SRR2453338.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453339/SRR2453339"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453340/SRR2453340.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453341/SRR2453341"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453342/SRR2453342.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453343/SRR2453343"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453344/SRR2453344.sralite.1"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453345/SRR2453345.sralite.1"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453346/SRR2453346.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453347/SRR2453347"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453348/SRR2453348.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453349/SRR2453349"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453350/SRR2453350"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453351/SRR2453351.sralite.1"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453352/SRR2453352.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453353/SRR2453353"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453354/SRR2453354.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453355/SRR2453355"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453356/SRR2453356.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453357/SRR2453357"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453358/SRR2453358.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453359/SRR2453359"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453360/SRR2453360"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453361/SRR2453361"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453362/SRR2453362"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453363/SRR2453363"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453364/SRR2453364"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453365/SRR2453365"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453366/SRR2453366"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453367/SRR2453367"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453368/SRR2453368"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453369/SRR2453369"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453370/SRR2453370"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453371/SRR2453371"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908388/SRR9908388"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908389/SRR9908389"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908390/SRR9908390"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908391/SRR9908391"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908392/SRR9908392"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908393/SRR9908393"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908394/SRR9908394"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908395/SRR9908395"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908396/SRR9908396"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908397/SRR9908397"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908398/SRR9908398"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908399/SRR9908399"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908400/SRR9908400"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908401/SRR9908401"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908402/SRR9908402"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908403/SRR9908403"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908404/SRR9908404"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908405/SRR9908405"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908406/SRR9908406"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908407/SRR9908407"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908408/SRR9908408"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908409/SRR9908409"

# --- Additional data files ---
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908407/SRR9908407"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908408/SRR9908408"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908409/SRR9908409"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908401/SRR9908401"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908402/SRR9908402"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908403/SRR9908403"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908404/SRR9908404"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908405/SRR9908405"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908406/SRR9908406"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908390/SRR9908390"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908388/SRR9908388"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908389/SRR9908389"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908393/SRR9908393"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908394/SRR9908394"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908391/SRR9908391"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908395/SRR9908395"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908396/SRR9908396"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908397/SRR9908397"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908398/SRR9908398"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908399/SRR9908399"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908400/SRR9908400"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9908392/SRR9908392"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453299/SRR2453299"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453300/SRR2453300"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453301/SRR2453301"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453302/SRR2453302"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453303/SRR2453303"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453304/SRR2453304"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453305/SRR2453305"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453306/SRR2453306"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453307/SRR2453307"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453308/SRR2453308"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453309/SRR2453309"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453310/SRR2453310"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453311/SRR2453311"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453312/SRR2453312"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453313/SRR2453313"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453314/SRR2453314"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453315/SRR2453315"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453316/SRR2453316"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453317/SRR2453317"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453318/SRR2453318"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453319/SRR2453319"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453320/SRR2453320"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453321/SRR2453321"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453322/SRR2453322"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453323/SRR2453323"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453324/SRR2453324"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453325/SRR2453325"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453326/SRR2453326"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453327/SRR2453327"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453328/SRR2453328"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453329/SRR2453329"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453330/SRR2453330"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453331/SRR2453331"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453333/SRR2453333"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453332/SRR2453332"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453334/SRR2453334"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453335/SRR2453335.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453336/SRR2453336"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453338/SRR2453338.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453339/SRR2453339"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453340/SRR2453340.sralite.1"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453337/SRR2453337.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453341/SRR2453341"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453342/SRR2453342.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453343/SRR2453343"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453344/SRR2453344.sralite.1"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453345/SRR2453345.sralite.1"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453346/SRR2453346.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453347/SRR2453347"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453348/SRR2453348.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453349/SRR2453349"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453350/SRR2453350"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453351/SRR2453351.sralite.1"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453352/SRR2453352.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453353/SRR2453353"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453354/SRR2453354.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453355/SRR2453355"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453356/SRR2453356.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453357/SRR2453357"
curl -L -O -C - "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/453/SRR2453358/SRR2453358.sralite.1"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453359/SRR2453359"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453360/SRR2453360"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453361/SRR2453361"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453362/SRR2453362"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453363/SRR2453363"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453364/SRR2453364"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453365/SRR2453365"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453366/SRR2453366"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453367/SRR2453367"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453368/SRR2453368"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453369/SRR2453369"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453370/SRR2453370"
curl -L -O -C - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR2453371/SRR2453371"

echo "Download complete. Files saved to $OUTDIR"