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ENCSR462MFN

ENCSR ENCODE
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Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHcLV29)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of in Homo sapiens HepG2

Overall Design

Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHcLV29)

Analysis

View Data Processing
Analysis page is available for ENCSR462MFN.

ENCODE Metadata

Total file size: 24.1 GB
Assay: CRISPR RNA-seq
Biosample: Homo sapiens HepG2
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF103EDD ENCFF103EDD.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 2.5 GB link
ENCFF319AQT ENCFF319AQT.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.4 GB link
ENCFF482NNA ENCFF482NNA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 6.7 GB link
ENCFF850SBL ENCFF850SBL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 4.9 GB link
ENCFF513WLQ ENCFF513WLQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 72.1 MB link
ENCFF804QJZ ENCFF804QJZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 87.6 MB link
ENCFF185VFJ ENCFF185VFJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 78.9 MB link
ENCFF597ATT ENCFF597ATT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 64.0 MB link
ENCFF263KIC ENCFF263KIC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 73.1 MB link
ENCFF985FZI ENCFF985FZI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 88.9 MB link
ENCFF291OSD ENCFF291OSD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 65.3 MB link
ENCFF443BEO ENCFF443BEO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 80.7 MB link
ENCFF098RBG ENCFF098RBG.fastq fastq (reads) reads 1.3 GB link
ENCFF109JZU ENCFF109JZU.fastq fastq (reads) reads 1.7 GB link
ENCFF499IBJ ENCFF499IBJ.fastq fastq (reads) reads 1.2 GB link
ENCFF940FEG ENCFF940FEG.fastq fastq (reads) reads 1.7 GB link
ENCFF497DXY ENCFF497DXY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF990ZGL ENCFF990ZGL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF161YDV ENCFF161YDV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.3 MB link
ENCFF414AXE ENCFF414AXE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF553ZVQ ENCFF553ZVQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF848JYM ENCFF848JYM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link