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ENCSR347NKX

ENCSR ENCODE
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Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT-BGKcLV30)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of in Homo sapiens K562

Overall Design

Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT-BGKcLV30)

Analysis

View Data Processing
Analysis page is available for ENCSR347NKX.

ENCODE Metadata

Total file size: 22.1 GB
Assay: CRISPR RNA-seq
Biosample: Homo sapiens K562
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF389XFZ ENCFF389XFZ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.3 GB link
ENCFF713ZGP ENCFF713ZGP.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 2.6 GB link
ENCFF325TFG ENCFF325TFG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 4.2 GB link
ENCFF993MLZ ENCFF993MLZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 5.4 GB link
ENCFF313ULH ENCFF313ULH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 84.5 MB link
ENCFF811LWK ENCFF811LWK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 105.4 MB link
ENCFF573BRB ENCFF573BRB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 76.1 MB link
ENCFF777UVK ENCFF777UVK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 95.4 MB link
ENCFF265ING ENCFF265ING.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 86.4 MB link
ENCFF684MNZ ENCFF684MNZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 107.8 MB link
ENCFF725SEX ENCFF725SEX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 98.5 MB link
ENCFF886OPY ENCFF886OPY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 78.4 MB link
ENCFF536IUO ENCFF536IUO.fastq fastq (reads) reads 1.2 GB link
ENCFF664FXS ENCFF664FXS.fastq fastq (reads) reads 1.3 GB link
ENCFF670ZVO ENCFF670ZVO.fastq fastq (reads) reads 1.6 GB link
ENCFF881UIX ENCFF881UIX.fastq fastq (reads) reads 1.7 GB link
ENCFF190QQV ENCFF190QQV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF250KUZ ENCFF250KUZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF105CIG ENCFF105CIG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.3 MB link
ENCFF469HVS ENCFF469HVS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link
ENCFF601YGJ ENCFF601YGJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF978WRH ENCFF978WRH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link