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ENCSR034FLW

ENCSR ENCODE
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RNA-seq on K562 cells treated with a CRISPR gRNA against SF3B3. (SF3B3-BGKcLV33)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of SF3B3 in Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens SF3B3

Overall Design

RNA-seq on K562 cells treated with a CRISPR gRNA against SF3B3. (SF3B3-BGKcLV33)

Analysis

View Data Processing
Analysis page is available for ENCSR034FLW.

ENCODE Metadata

Total file size: 37.7 GB
Assay: CRISPR RNA-seq
Target: SF3B3
Biosample: Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens SF3B3
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF433AKE ENCFF433AKE.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 5.6 GB link
ENCFF742AIX ENCFF742AIX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 5.2 GB link
ENCFF684DUH ENCFF684DUH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 7.0 GB link
ENCFF810UJO ENCFF810UJO.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 8.0 GB link
ENCFF040BFK ENCFF040BFK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 178.7 MB link
ENCFF269SSK ENCFF269SSK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 180.2 MB link
ENCFF047MDX ENCFF047MDX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 162.4 MB link
ENCFF160ZTV ENCFF160ZTV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 161.7 MB link
ENCFF156BEY ENCFF156BEY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 182.5 MB link
ENCFF681SYR ENCFF681SYR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 183.9 MB link
ENCFF100GDQ ENCFF100GDQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 167.2 MB link
ENCFF112PWP ENCFF112PWP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 166.8 MB link
ENCFF172QJK ENCFF172QJK.fastq fastq (reads) reads 2.7 GB link
ENCFF888YQJ ENCFF888YQJ.fastq fastq (reads) reads 2.4 GB link
ENCFF919RCT ENCFF919RCT.fastq fastq (reads) reads 2.8 GB link
ENCFF984EIX ENCFF984EIX.fastq fastq (reads) reads 2.5 GB link
ENCFF282QQS ENCFF282QQS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF435RDE ENCFF435RDE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF062TVN ENCFF062TVN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.6 MB link
ENCFF509HQG ENCFF509HQG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.6 MB link
ENCFF611BCM ENCFF611BCM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF999KPO ENCFF999KPO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link