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ENCSR119PLU

ENCSR ENCODE
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RNA-seq on K562 cells treated with a CRISPR gRNA against RUVBL1. (RUVBL1-BGKcLV33)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of RUVBL1 in Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens RUVBL1

Overall Design

RNA-seq on K562 cells treated with a CRISPR gRNA against RUVBL1. (RUVBL1-BGKcLV33)

Analysis

View Data Processing
Analysis page is available for ENCSR119PLU.

ENCODE Metadata

Total file size: 36.8 GB
Assay: CRISPR RNA-seq
Target: RUVBL1
Biosample: Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens RUVBL1
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF542BBH ENCFF542BBH.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.3 GB link
ENCFF559VTD ENCFF559VTD.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 5.7 GB link
ENCFF076YMT ENCFF076YMT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 6.7 GB link
ENCFF320VII ENCFF320VII.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 8.9 GB link
ENCFF360FYE ENCFF360FYE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 143.9 MB link
ENCFF754MNC ENCFF754MNC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 167.4 MB link
ENCFF270XKK ENCFF270XKK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 148.3 MB link
ENCFF318ISQ ENCFF318ISQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 127.8 MB link
ENCFF183GIP ENCFF183GIP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 146.5 MB link
ENCFF820RBS ENCFF820RBS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 170.6 MB link
ENCFF317YAE ENCFF317YAE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 152.6 MB link
ENCFF909WTJ ENCFF909WTJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 131.4 MB link
ENCFF103JRC ENCFF103JRC.fastq fastq (reads) reads 2.9 GB link
ENCFF243OKE ENCFF243OKE.fastq fastq (reads) reads 2.1 GB link
ENCFF368UKQ ENCFF368UKQ.fastq fastq (reads) reads 2.8 GB link
ENCFF400TRD ENCFF400TRD.fastq fastq (reads) reads 2.2 GB link
ENCFF959ENU ENCFF959ENU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF978PCZ ENCFF978PCZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF414LIJ ENCFF414LIJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF730RTN ENCFF730RTN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF802VMA ENCFF802VMA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF813MDJ ENCFF813MDJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link