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ENCSR051BQF

ENCSR ENCODE
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RNA-seq on HepG2 cells treated with a CRISPR gRNA against CAT. (CAT-BGHcLV27)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of CAT in Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens CAT

Overall Design

RNA-seq on HepG2 cells treated with a CRISPR gRNA against CAT. (CAT-BGHcLV27)

Analysis

View Data Processing
Analysis page is available for ENCSR051BQF.

ENCODE Metadata

Total file size: 31.4 GB
Assay: CRISPR RNA-seq
Target: CAT
Biosample: Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens CAT
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF599YQS ENCFF599YQS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.9 GB link
ENCFF788THI ENCFF788THI.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.5 GB link
ENCFF304LRF ENCFF304LRF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 7.2 GB link
ENCFF388NHR ENCFF388NHR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 8.1 GB link
ENCFF150JVA ENCFF150JVA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 86.8 MB link
ENCFF251VOA ENCFF251VOA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 93.8 MB link
ENCFF840DOG ENCFF840DOG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 83.7 MB link
ENCFF994PLN ENCFF994PLN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 78.2 MB link
ENCFF659VPE ENCFF659VPE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 95.6 MB link
ENCFF685ZED ENCFF685ZED.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 88.5 MB link
ENCFF224YFS ENCFF224YFS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 80.4 MB link
ENCFF712ULY ENCFF712ULY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 86.0 MB link
ENCFF254FXQ ENCFF254FXQ.fastq fastq (reads) reads 1.9 GB link
ENCFF358FBB ENCFF358FBB.fastq fastq (reads) reads 1.8 GB link
ENCFF624WVS ENCFF624WVS.fastq fastq (reads) reads 2.1 GB link
ENCFF702ALB ENCFF702ALB.fastq fastq (reads) reads 2.0 GB link
ENCFF068TAU ENCFF068TAU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF960QAX ENCFF960QAX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF629IZM ENCFF629IZM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link
ENCFF757DNB ENCFF757DNB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF925WNW ENCFF925WNW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF941DBV ENCFF941DBV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link