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ENCSR330VES

ENCSR ENCODE
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RNA-seq on HepG2 cells treated with a CRISPR gRNA against SCAF8. (SCAF8-BGHcLV31)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of SCAF8 in Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens SCAF8

Overall Design

RNA-seq on HepG2 cells treated with a CRISPR gRNA against SCAF8. (SCAF8-BGHcLV31)

Analysis

View Data Processing
Analysis page is available for ENCSR330VES.

ENCODE Metadata

Total file size: 46.5 GB
Assay: CRISPR RNA-seq
Target: SCAF8
Biosample: Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens SCAF8
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF362OIT ENCFF362OIT.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 5.5 GB link
ENCFF863QFF ENCFF863QFF.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 5.4 GB link
ENCFF526AZL ENCFF526AZL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 11.5 GB link
ENCFF775HWV ENCFF775HWV.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 11.3 GB link
ENCFF951YXX ENCFF951YXX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 118.3 MB link
ENCFF987YKK ENCFF987YKK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 120.9 MB link
ENCFF284FOP ENCFF284FOP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 107.5 MB link
ENCFF935HFP ENCFF935HFP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 105.7 MB link
ENCFF162UCL ENCFF162UCL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 122.9 MB link
ENCFF512GBO ENCFF512GBO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 120.3 MB link
ENCFF363EQF ENCFF363EQF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 110.3 MB link
ENCFF963JLD ENCFF963JLD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 108.5 MB link
ENCFF019JLK ENCFF019JLK.fastq fastq (reads) reads 3.0 GB link
ENCFF111KIY ENCFF111KIY.fastq fastq (reads) reads 2.9 GB link
ENCFF252HDU ENCFF252HDU.fastq fastq (reads) reads 2.9 GB link
ENCFF640XUZ ENCFF640XUZ.fastq fastq (reads) reads 2.9 GB link
ENCFF402ILP ENCFF402ILP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF498FFC ENCFF498FFC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF539VOT ENCFF539VOT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF809SEG ENCFF809SEG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF829EDV ENCFF829EDV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF921YGO ENCFF921YGO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link