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ENCSR146ITQ

ENCSR ENCODE
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RNA-seq on HepG2 cells treated with a CRISPR gRNA against DCTN2. (DCTN2-BGHcLV29)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of DCTN2 in Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens DCTN2

Overall Design

RNA-seq on HepG2 cells treated with a CRISPR gRNA against DCTN2. (DCTN2-BGHcLV29)

Analysis

View Data Processing
Analysis page is available for ENCSR146ITQ.

ENCODE Metadata

Total file size: 26.1 GB
Assay: CRISPR RNA-seq
Target: DCTN2
Biosample: Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens DCTN2
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF074VFE ENCFF074VFE.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 2.6 GB link
ENCFF240VQL ENCFF240VQL.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.7 GB link
ENCFF060LTB ENCFF060LTB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 5.3 GB link
ENCFF501TDY ENCFF501TDY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 7.4 GB link
ENCFF210VJT ENCFF210VJT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 96.0 MB link
ENCFF893UTI ENCFF893UTI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 80.7 MB link
ENCFF002PAH ENCFF002PAH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 72.4 MB link
ENCFF659VVT ENCFF659VVT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 86.8 MB link
ENCFF216NOT ENCFF216NOT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 81.9 MB link
ENCFF322ALR ENCFF322ALR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 97.4 MB link
ENCFF095ASI ENCFF095ASI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 88.7 MB link
ENCFF817OZC ENCFF817OZC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 74.0 MB link
ENCFF096VRG ENCFF096VRG.fastq fastq (reads) reads 1.9 GB link
ENCFF405KEE ENCFF405KEE.fastq fastq (reads) reads 1.3 GB link
ENCFF564ONC ENCFF564ONC.fastq fastq (reads) reads 1.8 GB link
ENCFF949FOV ENCFF949FOV.fastq fastq (reads) reads 1.4 GB link
ENCFF240GER ENCFF240GER.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF682ZFX ENCFF682ZFX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF082ZSG ENCFF082ZSG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF207IGW ENCFF207IGW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.3 MB link
ENCFF494AXI ENCFF494AXI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF724GOW ENCFF724GOW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.3 MB link