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ENCSR251SXS

ENCSR ENCODE
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RNA-seq on HepG2 cells treated with a CRISPR gRNA against ACO2. (ACO2-BGHcLV25)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of ACO2 in Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens ACO2

Overall Design

RNA-seq on HepG2 cells treated with a CRISPR gRNA against ACO2. (ACO2-BGHcLV25)

Analysis

View Data Processing
Analysis page is available for ENCSR251SXS.

ENCODE Metadata

Total file size: 38.2 GB
Assay: CRISPR RNA-seq
Target: ACO2
Biosample: Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens ACO2
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF249KVO ENCFF249KVO.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 5.0 GB link
ENCFF798EKF ENCFF798EKF.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.9 GB link
ENCFF053MQZ ENCFF053MQZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 8.2 GB link
ENCFF151EUB ENCFF151EUB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 10.6 GB link
ENCFF081SLS ENCFF081SLS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 110.5 MB link
ENCFF127UOR ENCFF127UOR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 127.3 MB link
ENCFF081JHL ENCFF081JHL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 98.8 MB link
ENCFF807SLG ENCFF807SLG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 114.2 MB link
ENCFF012OIK ENCFF012OIK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 129.2 MB link
ENCFF645MKO ENCFF645MKO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 112.0 MB link
ENCFF339GVO ENCFF339GVO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 101.2 MB link
ENCFF648RUW ENCFF648RUW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 117.0 MB link
ENCFF471QVZ ENCFF471QVZ.fastq fastq (reads) reads 2.1 GB link
ENCFF810EUE ENCFF810EUE.fastq fastq (reads) reads 2.7 GB link
ENCFF813ULK ENCFF813ULK.fastq fastq (reads) reads 2.0 GB link
ENCFF935IMV ENCFF935IMV.fastq fastq (reads) reads 2.6 GB link
ENCFF554JRU ENCFF554JRU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF717DUJ ENCFF717DUJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF149WTT ENCFF149WTT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF329CAQ ENCFF329CAQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link
ENCFF471QGP ENCFF471QGP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF919BZG ENCFF919BZG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link