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ENCSR516EPT

ENCSR ENCODE
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RNA-seq on K562 cells treated with a CRISPR gRNA against XRCC6. (XRCC6-BGKcLV15)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of XRCC6 in Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens XRCC6

Overall Design

RNA-seq on K562 cells treated with a CRISPR gRNA against XRCC6. (XRCC6-BGKcLV15)

Analysis

View Data Processing
Analysis page is available for ENCSR516EPT.

ENCODE Metadata

Total file size: 34.8 GB
Assay: CRISPR RNA-seq
Target: XRCC6
Biosample: Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens XRCC6
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF079LRA ENCFF079LRA.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.9 GB link
ENCFF412YFH ENCFF412YFH.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.5 GB link
ENCFF341YFL ENCFF341YFL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 9.0 GB link
ENCFF906SLC ENCFF906SLC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 7.5 GB link
ENCFF182OFK ENCFF182OFK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 135.0 MB link
ENCFF855YHD ENCFF855YHD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 127.3 MB link
ENCFF110XSC ENCFF110XSC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 110.4 MB link
ENCFF460SNE ENCFF460SNE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 116.5 MB link
ENCFF238FHM ENCFF238FHM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 128.3 MB link
ENCFF584DTE ENCFF584DTE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 136.3 MB link
ENCFF422BJX ENCFF422BJX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 112.3 MB link
ENCFF846TXI ENCFF846TXI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 118.6 MB link
ENCFF327VIY ENCFF327VIY.fastq fastq (reads) reads 2.0 GB link
ENCFF634DEZ ENCFF634DEZ.fastq fastq (reads) reads 2.1 GB link
ENCFF942QOY ENCFF942QOY.fastq fastq (reads) reads 2.3 GB link
ENCFF972IJW ENCFF972IJW.fastq fastq (reads) reads 2.4 GB link
ENCFF035POC ENCFF035POC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF392TQT ENCFF392TQT.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF256TGK ENCFF256TGK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF543PRN ENCFF543PRN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF792EFW ENCFF792EFW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF851ARX ENCFF851ARX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link