ENCSR580XTY
ENCSR ENCODERNA-seq on HepG2 cells treated with a CRISPR gRNA against PDCD4. (PDCD4-BGHcLV18)
Organism:
Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status:
released
Contact:
Brenton Graveley, UConn
Summary
CRISPR RNA-seq of PDCD4 in Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens PDCD4
Overall Design
RNA-seq on HepG2 cells treated with a CRISPR gRNA against PDCD4. (PDCD4-BGHcLV18)
Analysis
View Data Processing
Analysis page is available for ENCSR580XTY.
ENCODE Metadata
Total file size: 55.3 GBAssay: CRISPR RNA-seq
Target: PDCD4
Biosample: Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens PDCD4
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8)
tsv (6)
bam (4)
fastq (4)
Output types (9)
reads (4)
transcript quantifications (4)
alignments (2)
gene quantifications (2)
minus strand signal of all reads (2)
minus strand signal of unique reads (2)
plus strand signal of all reads (2)
plus strand signal of unique reads (2)
transcriptome alignments (2)
Data Files (22)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF144LEJ | ENCFF144LEJ.bam | bam (alignments); assembly: GRCh38; genome annotation: V29 | alignments | GRCh38 | 6.0 GB | link | |
| ENCFF210VOQ | ENCFF210VOQ.bam | bam (alignments); assembly: GRCh38; genome annotation: V29 | alignments | GRCh38 | 6.9 GB | link | |
| ENCFF213XXI | ENCFF213XXI.bam | bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 | transcriptome alignments | GRCh38 | 14.9 GB | link | |
| ENCFF822FGJ | ENCFF822FGJ.bam | bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 | transcriptome alignments | GRCh38 | 12.7 GB | link | |
| ENCFF625RRQ | ENCFF625RRQ.bigWig | bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 | minus strand signal of all reads | GRCh38 | 140.8 MB | link | |
| ENCFF902IWP | ENCFF902IWP.bigWig | bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 | minus strand signal of all reads | GRCh38 | 151.1 MB | link | |
| ENCFF231ZRP | ENCFF231ZRP.bigWig | bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | minus strand signal of unique reads | GRCh38 | 136.7 MB | link | |
| ENCFF918NII | ENCFF918NII.bigWig | bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | minus strand signal of unique reads | GRCh38 | 125.6 MB | link | |
| ENCFF352PWI | ENCFF352PWI.bigWig | bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 | plus strand signal of all reads | GRCh38 | 153.1 MB | link | |
| ENCFF552BZD | ENCFF552BZD.bigWig | bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 | plus strand signal of all reads | GRCh38 | 142.8 MB | link | |
| ENCFF086DDZ | ENCFF086DDZ.bigWig | bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | plus strand signal of unique reads | GRCh38 | 139.9 MB | link | |
| ENCFF545QIM | ENCFF545QIM.bigWig | bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | plus strand signal of unique reads | GRCh38 | 128.5 MB | link | |
| ENCFF045UGV | ENCFF045UGV.fastq | fastq (reads) | reads | 3.2 GB | link | ||
| ENCFF455XWV | ENCFF455XWV.fastq | fastq (reads) | reads | 3.1 GB | link | ||
| ENCFF693SYT | ENCFF693SYT.fastq | fastq (reads) | reads | 3.8 GB | link | ||
| ENCFF854HZB | ENCFF854HZB.fastq | fastq (reads) | reads | 3.6 GB | link | ||
| ENCFF451KFL | ENCFF451KFL.tsv | tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 | gene quantifications | GRCh38 | 10.5 MB | link | |
| ENCFF808QSH | ENCFF808QSH.tsv | tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 | gene quantifications | GRCh38 | 10.5 MB | link | |
| ENCFF076GUF | ENCFF076GUF.tsv | tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 | transcript quantifications | GRCh38 | 29.9 MB | link | |
| ENCFF188DKV | ENCFF188DKV.tsv | tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 | transcript quantifications | GRCh38 | 27.5 MB | link | |
| ENCFF465USK | ENCFF465USK.tsv | tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 | transcript quantifications | GRCh38 | 29.9 MB | link | |
| ENCFF575NTQ | ENCFF575NTQ.tsv | tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 | transcript quantifications | GRCh38 | 27.5 MB | link |