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ENCSR233UVM

ENCSR ENCODE
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RNA-seq on K562 cells treated with an shRNA knockdown against ABT1. (ABT1-BGKLV38-C)

Organism: Homo sapiens
Experiment Types:
shRNA RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

shRNA RNA-seq of ABT1 in Homo sapiens K562 expressing RNAi targeting H. sapiens ABT1

Overall Design

RNA-seq on K562 cells treated with an shRNA knockdown against ABT1. (ABT1-BGKLV38-C)

Analysis

View Data Processing
Analysis page is available for ENCSR233UVM.

ENCODE Metadata

Total file size: 25.0 GB
Assay: shRNA RNA-seq
Target: ABT1
Biosample: Homo sapiens K562 expressing RNAi targeting H. sapiens ABT1
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF437SBQ ENCFF437SBQ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.2 GB link
ENCFF586XYX ENCFF586XYX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 2.8 GB link
ENCFF273LZI ENCFF273LZI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 3.8 GB link
ENCFF813QMV ENCFF813QMV.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 5.7 GB link
ENCFF616PXQ ENCFF616PXQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 114.9 MB link
ENCFF796HXJ ENCFF796HXJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 91.8 MB link
ENCFF065ZRW ENCFF065ZRW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 79.1 MB link
ENCFF409BFF ENCFF409BFF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 99.4 MB link
ENCFF412IFD ENCFF412IFD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 116.1 MB link
ENCFF674VVY ENCFF674VVY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 92.7 MB link
ENCFF137OGV ENCFF137OGV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 101.5 MB link
ENCFF535YMR ENCFF535YMR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 80.7 MB link
ENCFF342RXT ENCFF342RXT.fastq fastq (reads) reads 1.5 GB link
ENCFF876EDH ENCFF876EDH.fastq fastq (reads) reads 2.3 GB link
ENCFF918XMS ENCFF918XMS.fastq fastq (reads) reads 1.5 GB link
ENCFF973VXT ENCFF973VXT.fastq fastq (reads) reads 2.3 GB link
ENCFF628XHC ENCFF628XHC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF718ZLN ENCFF718ZLN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF013XXL ENCFF013XXL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF187BDJ ENCFF187BDJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link
ENCFF300UDG ENCFF300UDG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF594TAF ENCFF594TAF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link