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ENCSR877JEM

ENCSR ENCODE
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Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT-BGKcLV23)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of in Homo sapiens K562

Overall Design

Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT-BGKcLV23)

Analysis

View Data Processing
Analysis page is available for ENCSR877JEM.

ENCODE Metadata

Total file size: 36.2 GB
Assay: CRISPR RNA-seq
Biosample: Homo sapiens K562
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF665RFV ENCFF665RFV.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.7 GB link
ENCFF984KDW ENCFF984KDW.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.5 GB link
ENCFF310OVN ENCFF310OVN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 8.4 GB link
ENCFF716KWY ENCFF716KWY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 8.1 GB link
ENCFF547FOD ENCFF547FOD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 127.3 MB link
ENCFF966LBY ENCFF966LBY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 124.2 MB link
ENCFF197UIU ENCFF197UIU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 111.2 MB link
ENCFF436XCV ENCFF436XCV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 110.2 MB link
ENCFF312VGD ENCFF312VGD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 128.7 MB link
ENCFF392AEN ENCFF392AEN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 125.6 MB link
ENCFF485ZBC ENCFF485ZBC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 112.7 MB link
ENCFF707GLH ENCFF707GLH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 113.6 MB link
ENCFF267XLI ENCFF267XLI.fastq fastq (reads) reads 2.5 GB link
ENCFF659QXG ENCFF659QXG.fastq fastq (reads) reads 2.4 GB link
ENCFF805HMT ENCFF805HMT.fastq fastq (reads) reads 2.2 GB link
ENCFF848HCL ENCFF848HCL.fastq fastq (reads) reads 2.4 GB link
ENCFF517GFB ENCFF517GFB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF528TRJ ENCFF528TRJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF130MIB ENCFF130MIB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF393MCH ENCFF393MCH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF400ACS ENCFF400ACS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF527EMU ENCFF527EMU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link