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ENCSR704VPL

ENCSR ENCODE
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Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHcLV22)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of in Homo sapiens HepG2 genetically modified (deletion) using CRISPR

Overall Design

Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHcLV22)

Analysis

View Data Processing
Analysis page is available for ENCSR704VPL.

ENCODE Metadata

Total file size: 75.3 GB
Assay: CRISPR RNA-seq
Biosample: Homo sapiens HepG2 genetically modified (deletion) using CRISPR
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF241FQW ENCFF241FQW.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 8.9 GB link
ENCFF486OMX ENCFF486OMX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 9.4 GB link
ENCFF083DPW ENCFF083DPW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 17.7 GB link
ENCFF485PHX ENCFF485PHX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 18.5 GB link
ENCFF751OUW ENCFF751OUW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 141.5 MB link
ENCFF779RZD ENCFF779RZD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 135.6 MB link
ENCFF642BIR ENCFF642BIR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 121.5 MB link
ENCFF718HLZ ENCFF718HLZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 126.5 MB link
ENCFF479JRJ ENCFF479JRJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 137.8 MB link
ENCFF592VZZ ENCFF592VZZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 143.9 MB link
ENCFF408TBL ENCFF408TBL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 124.8 MB link
ENCFF696IPT ENCFF696IPT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 130.0 MB link
ENCFF076QNU ENCFF076QNU.fastq fastq (reads) reads 5.0 GB link
ENCFF136JIN ENCFF136JIN.fastq fastq (reads) reads 4.9 GB link
ENCFF333VBK ENCFF333VBK.fastq fastq (reads) reads 5.2 GB link
ENCFF681YRX ENCFF681YRX.fastq fastq (reads) reads 4.7 GB link
ENCFF247PXP ENCFF247PXP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF444VHF ENCFF444VHF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF429YZY ENCFF429YZY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 30.0 MB link
ENCFF509MKZ ENCFF509MKZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.6 MB link
ENCFF765KAX ENCFF765KAX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF778ATS ENCFF778ATS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 30.0 MB link