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ENCSR774AEQ

ENCSR ENCODE
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Control shRNA against no target in K562 cells followed by RNA-seq. (NT-BGKLV34-B)

Organism: Homo sapiens
Experiment Types:
shRNA RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

shRNA RNA-seq of in Homo sapiens K562 expressing RNAi

Overall Design

Control shRNA against no target in K562 cells followed by RNA-seq. (NT-BGKLV34-B)

Analysis

View Data Processing
Analysis page is available for ENCSR774AEQ.

ENCODE Metadata

Total file size: 23.0 GB
Assay: shRNA RNA-seq
Biosample: Homo sapiens K562 expressing RNAi
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF460BEY ENCFF460BEY.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.3 GB link
ENCFF659TTG ENCFF659TTG.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 2.9 GB link
ENCFF379HVT ENCFF379HVT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 4.8 GB link
ENCFF685JRO ENCFF685JRO.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 4.3 GB link
ENCFF443YQR ENCFF443YQR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 93.1 MB link
ENCFF902YCM ENCFF902YCM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 86.6 MB link
ENCFF123SER ENCFF123SER.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 80.1 MB link
ENCFF897UWN ENCFF897UWN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 75.1 MB link
ENCFF352BWA ENCFF352BWA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 87.5 MB link
ENCFF444AVP ENCFF444AVP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 94.1 MB link
ENCFF478TFU ENCFF478TFU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 76.8 MB link
ENCFF483FNC ENCFF483FNC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 82.0 MB link
ENCFF051YSC ENCFF051YSC.fastq fastq (reads) reads 1.6 GB link
ENCFF060SHK ENCFF060SHK.fastq fastq (reads) reads 1.8 GB link
ENCFF108KTH ENCFF108KTH.fastq fastq (reads) reads 1.9 GB link
ENCFF593EMC ENCFF593EMC.fastq fastq (reads) reads 1.7 GB link
ENCFF667HUC ENCFF667HUC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF769QRF ENCFF769QRF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF362TGC ENCFF362TGC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.3 MB link
ENCFF472FQI ENCFF472FQI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF907HZS ENCFF907HZS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.3 MB link
ENCFF971TOR ENCFF971TOR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link