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ENCSR444IOJ

ENCSR ENCODE
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RNA-seq on HepG2 cells treated with a CRISPR gRNA against MORC2. (MORC2-BGHcLV20)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of MORC2 in Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens MORC2

Overall Design

RNA-seq on HepG2 cells treated with a CRISPR gRNA against MORC2. (MORC2-BGHcLV20)

Analysis

View Data Processing
Analysis page is available for ENCSR444IOJ.

ENCODE Metadata

Total file size: 39.3 GB
Assay: CRISPR RNA-seq
Target: MORC2
Biosample: Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens MORC2
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF787NHJ ENCFF787NHJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.3 GB link
ENCFF985XDI ENCFF985XDI.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.6 GB link
ENCFF745GGK ENCFF745GGK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 9.3 GB link
ENCFF908HVK ENCFF908HVK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 9.8 GB link
ENCFF264FWQ ENCFF264FWQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 103.3 MB link
ENCFF944VRW ENCFF944VRW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 106.4 MB link
ENCFF051ECV ENCFF051ECV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 94.3 MB link
ENCFF466AYQ ENCFF466AYQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 92.3 MB link
ENCFF048MFZ ENCFF048MFZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 105.2 MB link
ENCFF410RKE ENCFF410RKE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 108.4 MB link
ENCFF062VGQ ENCFF062VGQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 94.8 MB link
ENCFF148WMQ ENCFF148WMQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 96.9 MB link
ENCFF008MCE ENCFF008MCE.fastq fastq (reads) reads 2.7 GB link
ENCFF453GKS ENCFF453GKS.fastq fastq (reads) reads 2.5 GB link
ENCFF813ILG ENCFF813ILG.fastq fastq (reads) reads 2.5 GB link
ENCFF976KNT ENCFF976KNT.fastq fastq (reads) reads 2.6 GB link
ENCFF230MDA ENCFF230MDA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF382ZAM ENCFF382ZAM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF054IKG ENCFF054IKG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF356ICZ ENCFF356ICZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link
ENCFF449ZEL ENCFF449ZEL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF843VND ENCFF843VND.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 30.0 MB link