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ENCSR519LZD

ENCSR ENCODE
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RNA-seq on K562 cells treated with a CRISPR gRNA against RBM28. (RBM28-BGKcLV30)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of RBM28 in Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens RBM28

Overall Design

RNA-seq on K562 cells treated with a CRISPR gRNA against RBM28. (RBM28-BGKcLV30)

Analysis

View Data Processing
Analysis page is available for ENCSR519LZD.

ENCODE Metadata

Total file size: 37.2 GB
Assay: CRISPR RNA-seq
Target: RBM28
Biosample: Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens RBM28
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF221KLH ENCFF221KLH.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.9 GB link
ENCFF857BZU ENCFF857BZU.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.9 GB link
ENCFF216OQL ENCFF216OQL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 8.1 GB link
ENCFF811TFC ENCFF811TFC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 8.2 GB link
ENCFF289OOU ENCFF289OOU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 134.9 MB link
ENCFF297QTU ENCFF297QTU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 133.1 MB link
ENCFF606TMH ENCFF606TMH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 120.8 MB link
ENCFF620OED ENCFF620OED.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 120.1 MB link
ENCFF743ALN ENCFF743ALN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 138.1 MB link
ENCFF939QMQ ENCFF939QMQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 136.2 MB link
ENCFF507XYY ENCFF507XYY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 124.8 MB link
ENCFF773HCC ENCFF773HCC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 124.0 MB link
ENCFF299BXC ENCFF299BXC.fastq fastq (reads) reads 2.4 GB link
ENCFF730GJZ ENCFF730GJZ.fastq fastq (reads) reads 2.5 GB link
ENCFF863QPO ENCFF863QPO.fastq fastq (reads) reads 2.4 GB link
ENCFF986YST ENCFF986YST.fastq fastq (reads) reads 2.5 GB link
ENCFF045ULA ENCFF045ULA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF865STO ENCFF865STO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF062URV ENCFF062URV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link
ENCFF130YOL ENCFF130YOL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link
ENCFF451XJL ENCFF451XJL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF644ZKA ENCFF644ZKA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link