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ENCSR248WTR

ENCSR ENCODE
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Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHcLV29-B)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of in Homo sapiens HepG2

Overall Design

Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHcLV29-B)

Analysis

View Data Processing
Analysis page is available for ENCSR248WTR.

ENCODE Metadata

Total file size: 20.3 GB
Assay: CRISPR RNA-seq
Biosample: Homo sapiens HepG2
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF071VZU ENCFF071VZU.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 1.9 GB link
ENCFF627FSK ENCFF627FSK.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.1 GB link
ENCFF095RBB ENCFF095RBB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 3.6 GB link
ENCFF976FGU ENCFF976FGU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 6.0 GB link
ENCFF167WMD ENCFF167WMD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 78.7 MB link
ENCFF703ZWL ENCFF703ZWL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 60.2 MB link
ENCFF032PHC ENCFF032PHC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 70.6 MB link
ENCFF957TVE ENCFF957TVE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 53.7 MB link
ENCFF555ECL ENCFF555ECL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 61.2 MB link
ENCFF580HLC ENCFF580HLC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 79.9 MB link
ENCFF876NRC ENCFF876NRC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 54.8 MB link
ENCFF899QHS ENCFF899QHS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 72.2 MB link
ENCFF232LIW ENCFF232LIW.fastq fastq (reads) reads 955.9 MB link
ENCFF451YIM ENCFF451YIM.fastq fastq (reads) reads 1.5 GB link
ENCFF568BCW ENCFF568BCW.fastq fastq (reads) reads 981.2 MB link
ENCFF755AWN ENCFF755AWN.fastq fastq (reads) reads 1.6 GB link
ENCFF248AAW ENCFF248AAW.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF485AZF ENCFF485AZF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF206KXR ENCFF206KXR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.2 MB link
ENCFF386LUW ENCFF386LUW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF425EEU ENCFF425EEU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF463HHB ENCFF463HHB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link