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ENCSR706QGC

ENCSR ENCODE
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RNA-seq on HepG2 cells treated with a CRISPR gRNA against RNH1. (RNH1-BGHcLV32)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of RNH1 in Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens RNH1

Overall Design

RNA-seq on HepG2 cells treated with a CRISPR gRNA against RNH1. (RNH1-BGHcLV32)

Analysis

View Data Processing
Analysis page is available for ENCSR706QGC.

ENCODE Metadata

Total file size: 32.3 GB
Assay: CRISPR RNA-seq
Target: RNH1
Biosample: Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens RNH1
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF929MEP ENCFF929MEP.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.0 GB link
ENCFF965RLS ENCFF965RLS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.9 GB link
ENCFF053KXO ENCFF053KXO.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 7.6 GB link
ENCFF456KWN ENCFF456KWN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 7.8 GB link
ENCFF148AVW ENCFF148AVW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 90.9 MB link
ENCFF762VMM ENCFF762VMM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 93.1 MB link
ENCFF125MKW ENCFF125MKW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 81.7 MB link
ENCFF317RVW ENCFF317RVW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 83.0 MB link
ENCFF246KAX ENCFF246KAX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 91.9 MB link
ENCFF579VCK ENCFF579VCK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 94.2 MB link
ENCFF089ZHV ENCFF089ZHV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 84.7 MB link
ENCFF095QZO ENCFF095QZO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 83.3 MB link
ENCFF016AYH ENCFF016AYH.fastq fastq (reads) reads 2.1 GB link
ENCFF102UGC ENCFF102UGC.fastq fastq (reads) reads 2.0 GB link
ENCFF232LMZ ENCFF232LMZ.fastq fastq (reads) reads 2.0 GB link
ENCFF488DWS ENCFF488DWS.fastq fastq (reads) reads 2.1 GB link
ENCFF924PUQ ENCFF924PUQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF943RYG ENCFF943RYG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF017TZO ENCFF017TZO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF286DHG ENCFF286DHG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link
ENCFF896YQM ENCFF896YQM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF909FVH ENCFF909FVH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link