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ENCSR171XCR

ENCSR ENCODE
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eCLIP experiment on K562 against EED

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: archived
Contact: Gene Yeo, UCSD

Relations

control:ENCSR818IOS

Summary

eCLIP of EED in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against EED

Analysis

View Data Processing
Analysis page is available for ENCSR171XCR.

ENCODE Metadata

Total file size: 3.1 GB
Assay: eCLIP
Target: EED
Biosample: Homo sapiens K562
Files: 18
Unique ENC file IDs: 18
File Formats
bam (4) bigWig (4) bed (3) bigBed (3) fastq (2) tsv (2)
Output types (7)
peaks (6) alignments (2) minus strand signal of unique reads (2) plus strand signal of unique reads (2) reads (2) transcript quantifications (2) unfiltered alignments (2)

Data Files (18)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF201GCL ENCFF201GCL.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 258.8 MB link
ENCFF369DFE ENCFF369DFE.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 267.6 MB link
ENCFF038HGR ENCFF038HGR.bam bam (unfiltered alignments); assembly: GRCh38; genome annotation: V29 unfiltered alignments GRCh38 399.2 MB link
ENCFF067FDO ENCFF067FDO.bam bam (unfiltered alignments); assembly: GRCh38; genome annotation: V29 unfiltered alignments GRCh38 420.5 MB link
ENCFF005INK ENCFF005INK.bed bed (peaks); assembly: GRCh38; genome annotation: V29 peaks GRCh38 2.0 MB link
ENCFF561ZDH ENCFF561ZDH.bed bed (peaks); assembly: GRCh38; genome annotation: V29 peaks GRCh38 2.0 MB link
ENCFF823HFC ENCFF823HFC.bed bed (peaks); assembly: GRCh38; genome annotation: V29 peaks GRCh38 327.7 KB link
ENCFF195YXF ENCFF195YXF.bigBed bigBed (peaks); assembly: GRCh38; genome annotation: V29 peaks GRCh38 786.1 KB link
ENCFF407TYS ENCFF407TYS.bigBed bigBed (peaks); assembly: GRCh38; genome annotation: V29 peaks GRCh38 3.3 MB link
ENCFF984GXB ENCFF984GXB.bigBed bigBed (peaks); assembly: GRCh38; genome annotation: V29 peaks GRCh38 3.5 MB link
ENCFF130SHU ENCFF130SHU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 22.2 MB link
ENCFF523VSN ENCFF523VSN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 20.9 MB link
ENCFF488LBE ENCFF488LBE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 23.1 MB link
ENCFF950ECS ENCFF950ECS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 22.3 MB link
ENCFF288VIR ENCFF288VIR.fastq fastq (reads) reads 907.1 MB link
ENCFF711WKM ENCFF711WKM.fastq fastq (reads) reads 810.7 MB link
ENCFF719TFU ENCFF719TFU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 25.5 MB link
ENCFF762FXM ENCFF762FXM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 21.1 MB link